Wall clock time and date at job start Wed Apr 1 2020 04:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46490 * 120.00329 * 2 1 4 4 S 1.65603 * 119.99508 * 180.02562 * 2 1 3 5 5 O 1.42097 * 104.28025 * 333.92545 * 4 2 1 6 6 O 1.42098 * 104.27357 * 206.07077 * 4 2 1 7 7 C 1.81395 * 104.45138 * 90.00329 * 4 2 1 8 8 C 1.53003 * 109.47102 * 179.97438 * 7 4 2 9 9 C 1.50699 * 109.47027 * 179.97438 * 8 7 4 10 10 O 1.21285 * 120.00087 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00194 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00373 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46933 * 35.00418 * 12 11 9 14 14 C 1.53002 * 109.46922 * 154.99596 * 12 11 9 15 15 C 1.53007 * 109.47066 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46870 * 300.00594 * 15 14 12 17 17 H 1.09001 * 109.46795 * 299.99379 * 16 15 14 18 18 N 1.46499 * 109.46709 * 179.97438 * 16 15 14 19 19 C 1.36939 * 119.99547 * 154.99958 * 18 16 15 20 20 H 1.07993 * 120.00716 * 359.97438 * 19 18 16 21 21 C 1.38817 * 119.99459 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00154 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99635 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99668 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99848 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99841 * 23 21 19 27 27 C 1.53001 * 109.47270 * 59.99633 * 16 15 14 28 28 C 1.52995 * 109.47296 * 274.99910 * 12 11 9 29 29 H 1.09007 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46860 * 300.00089 * 1 2 3 31 31 H 1.08998 * 109.46802 * 60.00044 * 1 2 3 32 32 H 1.09000 * 109.47400 * 269.99791 * 3 2 1 33 33 H 1.09003 * 109.47333 * 29.99903 * 3 2 1 34 34 H 1.09004 * 109.47379 * 150.00135 * 3 2 1 35 35 H 1.08993 * 109.47474 * 59.99684 * 7 4 2 36 36 H 1.09008 * 109.47080 * 299.99279 * 7 4 2 37 37 H 1.08993 * 109.47130 * 59.99577 * 8 7 4 38 38 H 1.08996 * 109.47005 * 299.99473 * 8 7 4 39 39 H 0.97004 * 119.99960 * 359.97438 * 11 9 8 40 40 H 1.09007 * 109.47030 * 60.00670 * 14 12 11 41 41 H 1.08994 * 109.47459 * 300.00496 * 14 12 11 42 42 H 1.08998 * 109.47348 * 180.02562 * 15 14 12 43 43 H 1.09001 * 109.46904 * 59.99906 * 15 14 12 44 44 H 0.96998 * 120.00185 * 334.99342 * 18 16 15 45 45 H 0.96993 * 120.00007 * 0.02562 * 22 21 19 46 46 H 1.08994 * 109.47034 * 60.00152 * 27 16 15 47 47 H 1.09004 * 109.46991 * 179.97438 * 27 16 15 48 48 H 1.08994 * 109.47137 * 300.00009 * 28 12 11 49 49 H 1.08998 * 109.46868 * 59.99949 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 16 2.2929 -1.4342 -0.0006 5 8 1.3969 -2.3564 0.6042 6 8 3.5394 -1.1195 0.6047 7 6 2.5193 -1.8255 -1.7574 8 6 3.2818 -3.1451 -1.8918 9 6 3.4694 -3.4704 -3.3513 10 8 3.0354 -2.7209 -4.2003 11 7 4.1193 -4.5943 -3.7131 12 6 4.3011 -4.9109 -5.1319 13 1 4.4481 -3.9886 -5.6940 14 6 5.5265 -5.8115 -5.3005 15 6 5.7168 -6.1416 -6.7823 16 6 4.4753 -6.8658 -7.3070 17 1 4.3284 -7.7883 -6.7452 18 7 4.6573 -7.1814 -8.7260 19 6 3.9747 -8.2271 -9.2878 20 1 3.3024 -8.8194 -8.6849 21 6 4.1467 -8.5257 -10.6325 22 7 4.9656 -7.8035 -11.3675 23 14 3.2160 -9.9526 -11.3988 24 1 4.0230 -11.1932 -11.2756 25 1 2.9649 -9.6661 -12.8341 26 1 1.9204 -10.1331 -10.6960 27 6 3.2501 -5.9652 -7.1383 28 6 3.0597 -5.6354 -5.6560 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.3793 1.5833 -1.0276 33 1 1.6085 2.0283 0.5138 34 1 3.1500 1.1382 0.5138 35 1 3.0866 -1.0280 -2.2371 36 1 1.5451 -1.9179 -2.2375 37 1 2.7149 -3.9428 -1.4120 38 1 4.2560 -3.0523 -1.4119 39 1 4.4667 -5.1936 -3.0341 40 1 5.3796 -6.7338 -4.7384 41 1 6.4109 -5.2953 -4.9271 42 1 6.5895 -6.7835 -6.9024 43 1 5.8638 -5.2191 -7.3441 44 1 5.2613 -6.6496 -9.2675 45 1 5.4491 -7.0629 -10.9695 46 1 3.3971 -5.0428 -7.7001 47 1 2.3657 -6.4810 -7.5125 48 1 2.9129 -6.5576 -5.0939 49 1 2.1868 -4.9938 -5.5359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482025377.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:27 Heat of formation + Delta-G solvation = -137.955307 kcal Electronic energy + Delta-G solvation = -28469.061082 eV Core-core repulsion = 24363.842968 eV Total energy + Delta-G solvation = -4105.218114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17882 -39.44475 -38.32610 -37.27327 -36.89687 -36.65789 -34.86367 -34.22873 -32.25951 -31.78014 -28.97524 -28.95294 -26.41839 -25.57855 -25.13495 -23.70957 -22.60819 -21.50708 -20.89635 -19.93479 -19.38002 -18.95470 -18.12058 -17.59302 -17.52271 -16.97879 -16.89345 -16.66339 -15.95545 -15.56519 -15.49775 -15.38149 -15.21435 -15.15777 -14.92969 -14.43980 -14.06027 -13.97976 -13.63329 -13.61456 -13.52812 -13.30327 -13.22746 -13.17423 -13.03181 -12.74286 -12.56661 -12.54473 -12.54249 -12.38100 -12.25016 -12.11383 -11.97064 -11.87753 -11.54549 -11.50600 -11.15123 -10.96700 -10.84316 -10.09595 -10.01490 -9.11514 -8.39095 -5.32431 -0.86143 1.54869 1.56820 1.57059 1.67769 1.81595 2.09514 2.70702 2.76834 3.09725 3.29082 3.39427 3.61047 3.68859 3.75762 3.77417 3.81222 3.91077 4.18822 4.28075 4.28745 4.31863 4.43514 4.46183 4.50448 4.52315 4.56059 4.58107 4.75968 4.77501 4.79826 4.88699 4.96577 4.99357 5.03668 5.04739 5.06779 5.15431 5.18297 5.42092 5.45596 5.53518 5.53588 5.61609 6.49770 6.52145 7.10627 7.20994 8.01173 8.12580 9.13048 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028327 B = 0.001687 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.220785 B =16593.104119 C =16882.736959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -1.009 6.009 3 C 0.073 3.927 4 S 2.631 3.369 5 O -0.980 6.980 6 O -0.979 6.979 7 C -0.606 4.606 8 C -0.141 4.141 9 C 0.517 3.483 10 O -0.579 6.579 11 N -0.711 5.711 12 C 0.152 3.848 13 H 0.066 0.934 14 C -0.106 4.106 15 C -0.114 4.114 16 C 0.176 3.824 17 H 0.045 0.955 18 N -0.752 5.752 19 C -0.326 4.326 20 H 0.066 0.934 21 C -0.109 4.109 22 N -0.978 5.978 23 Si 1.129 2.871 24 H -0.283 1.283 25 H -0.295 1.295 26 H -0.275 1.275 27 C -0.122 4.122 28 C -0.112 4.112 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.420 0.580 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.358 0.642 45 H 0.244 0.756 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.076 0.924 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 16.364 29.157 33.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.849 5.849 3 C -0.072 4.072 4 S 2.725 3.275 5 O -0.971 6.971 6 O -0.970 6.970 7 C -0.736 4.736 8 C -0.182 4.182 9 C 0.303 3.697 10 O -0.458 6.458 11 N -0.363 5.363 12 C 0.047 3.953 13 H 0.084 0.916 14 C -0.144 4.144 15 C -0.153 4.153 16 C 0.068 3.932 17 H 0.063 0.937 18 N -0.393 5.393 19 C -0.458 4.458 20 H 0.084 0.916 21 C -0.300 4.300 22 N -0.626 5.626 23 Si 0.954 3.046 24 H -0.210 1.210 25 H -0.221 1.221 26 H -0.200 1.200 27 C -0.163 4.163 28 C -0.152 4.152 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.257 0.743 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.190 0.810 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.095 0.905 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.510 15.468 28.102 32.547 hybrid contribution 0.374 1.092 0.166 1.166 sum -5.136 16.559 28.267 33.161 Atomic orbital electron populations 1.21779 0.77208 1.04116 1.03777 1.57139 1.16030 1.21644 1.90087 1.21798 0.97317 0.84742 1.03323 1.04321 0.72963 0.73029 0.77207 1.93565 1.65151 1.63761 1.74598 1.93554 1.45474 1.83351 1.74598 1.30410 1.11239 1.06278 1.25652 1.21544 1.04804 0.97342 0.94493 1.20777 0.76889 0.80551 0.91467 1.90719 1.50546 1.50539 1.54040 1.45949 1.57757 1.24246 1.08359 1.20830 0.94961 0.98038 0.81500 0.91623 1.21654 0.97070 1.00187 0.95497 1.21658 0.97511 0.99869 0.96283 1.20445 0.93483 0.95438 0.83808 0.93681 1.42699 1.52886 1.36456 1.07258 1.20396 1.21379 1.08117 0.95861 0.91650 1.27182 1.02065 1.06588 0.94122 1.70956 1.31527 1.21875 1.38251 0.82602 0.74753 0.72409 0.74841 1.20963 1.22128 1.19988 1.22008 0.99519 0.99107 0.95641 1.21773 0.97787 1.00432 0.95173 0.90012 0.90684 0.90308 0.91167 0.88923 0.90481 0.83741 0.83923 0.84915 0.84656 0.74254 0.89345 0.89062 0.91566 0.92861 0.81047 0.94601 0.94361 0.94393 0.90529 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.62 127.77 1.36 1.94 16 2 N -1.01 -10.50 3.52 -562.69 -1.98 -12.48 16 3 C 0.07 0.54 10.68 127.77 1.37 1.91 16 4 S 2.63 35.53 5.41 -56.49 -0.31 35.23 16 5 O -0.98 -18.81 16.57 -127.65 -2.12 -20.93 16 6 O -0.98 -18.48 16.57 -127.65 -2.12 -20.60 16 7 C -0.61 -7.01 5.47 71.98 0.39 -6.61 16 8 C -0.14 -1.60 5.71 29.85 0.17 -1.43 16 9 C 0.52 10.05 7.79 87.66 0.68 10.73 16 10 O -0.58 -16.65 15.64 -3.04 -0.05 -16.70 16 11 N -0.71 -11.82 5.08 -442.54 -2.25 -14.07 16 12 C 0.15 3.53 2.45 44.99 0.11 3.64 16 13 H 0.07 1.88 7.58 -2.39 -0.02 1.86 16 14 C -0.11 -2.19 5.39 30.60 0.16 -2.03 16 15 C -0.11 -3.46 5.39 30.60 0.16 -3.30 16 16 C 0.18 6.84 2.77 44.99 0.12 6.97 16 17 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 18 N -0.75 -38.18 5.12 -322.93 -1.65 -39.83 16 19 C -0.33 -18.49 9.93 84.03 0.83 -17.65 16 20 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 21 C -0.11 -6.40 5.50 84.86 0.47 -5.93 16 22 N -0.98 -62.11 13.70 21.65 0.30 -61.82 16 23 Si 1.13 52.71 29.92 68.60 2.05 54.76 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 C -0.12 -4.48 5.50 30.61 0.17 -4.31 16 28 C -0.11 -3.13 5.50 30.61 0.17 -2.96 16 29 H 0.08 0.72 6.87 -2.38 -0.02 0.70 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.09 0.39 8.07 -2.39 -0.02 0.37 16 34 H 0.08 0.72 6.91 -2.39 -0.02 0.70 16 35 H 0.14 1.57 8.10 -2.39 -0.02 1.55 16 36 H 0.14 1.61 8.10 -2.39 -0.02 1.59 16 37 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.42 3.77 8.60 -92.70 -0.80 2.97 16 40 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.36 19.09 6.63 -92.71 -0.61 18.48 16 45 H 0.24 15.43 6.77 -92.71 -0.63 14.80 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -85.08 404.94 -2.26 -87.35 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -0.32 Total: 28.12 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 6.17 Total: -19.03 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -5.58 Total: -128.20 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -4.28 Total: -58.22 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.05 Total: 54.76 kcal Atomic # 16 Polarization: 35.53 SS G_CDS: -0.31 Total: 35.23 kcal Total: -85.08 -2.26 -87.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482025377.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.607 kcal (2) G-P(sol) polarization free energy of solvation -85.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds