Wall clock time and date at job start Wed Apr 1 2020 04:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65591 * 120.00282 * 2 1 4 4 O 1.42096 * 104.27913 * 308.92550 * 3 2 1 5 5 O 1.42105 * 104.27612 * 181.06826 * 3 2 1 6 6 C 1.81403 * 104.45117 * 64.99966 * 3 2 1 7 7 C 1.52992 * 109.47491 * 179.97438 * 6 3 2 8 8 C 1.50696 * 109.47336 * 179.97438 * 7 6 3 9 9 O 1.21285 * 120.00329 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00099 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99753 * 174.86644 * 10 8 7 12 12 C 1.53001 * 109.47458 * 303.74261 * 11 10 8 13 13 N 1.46505 * 109.47026 * 305.42576 * 12 11 10 14 14 C 1.36933 * 119.99790 * 175.04222 * 13 12 11 15 15 H 1.08003 * 119.99977 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00047 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99840 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00067 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46887 * 60.00543 * 18 16 14 20 20 H 1.48500 * 109.47160 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47601 * 300.00610 * 18 16 14 22 22 C 1.53006 * 109.46799 * 183.74102 * 11 10 8 23 23 C 1.52995 * 109.47561 * 300.00292 * 22 11 10 24 24 C 1.53000 * 109.46936 * 300.00338 * 23 22 11 25 25 C 1.52998 * 109.47426 * 59.99670 * 24 23 22 26 26 C 1.52995 * 109.47332 * 300.00088 * 25 24 23 27 27 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47235 * 300.00186 * 1 2 3 29 29 H 1.09001 * 109.46620 * 60.00181 * 1 2 3 30 30 H 0.97007 * 119.99222 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47159 * 59.99664 * 6 3 2 32 32 H 1.09006 * 109.47032 * 300.00144 * 6 3 2 33 33 H 1.09004 * 109.46982 * 59.99815 * 7 6 3 34 34 H 1.08992 * 109.47444 * 300.00355 * 7 6 3 35 35 H 0.97003 * 119.99988 * 354.59763 * 10 8 7 36 36 H 1.09000 * 109.46604 * 65.42033 * 12 11 10 37 37 H 1.08997 * 109.47126 * 185.42089 * 12 11 10 38 38 H 0.96999 * 119.99671 * 355.04051 * 13 12 11 39 39 H 0.96999 * 120.00205 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.46889 * 60.00631 * 22 11 10 41 41 H 1.08998 * 109.46838 * 180.02562 * 22 11 10 42 42 H 1.08994 * 109.47503 * 179.97438 * 23 22 11 43 43 H 1.09013 * 109.46856 * 59.99685 * 23 22 11 44 44 H 1.08999 * 109.46951 * 299.99330 * 24 23 22 45 45 H 1.09006 * 109.46747 * 179.97438 * 24 23 22 46 46 H 1.09005 * 109.47045 * 179.97438 * 25 24 23 47 47 H 1.08998 * 109.46911 * 60.00225 * 25 24 23 48 48 H 1.09005 * 109.46947 * 300.00571 * 26 25 24 49 49 H 1.08993 * 109.47459 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4340 0.0000 4 8 1.7190 2.1702 -1.0713 5 8 3.6607 1.0490 -0.0257 6 6 1.8765 2.1973 1.5921 7 6 2.5901 3.5451 1.7137 8 6 2.2435 4.1795 3.0360 9 8 1.4994 3.6094 3.8057 10 7 2.7605 5.3803 3.3635 11 6 2.3369 6.0485 4.5966 12 6 0.8157 6.2122 4.5913 13 7 0.4035 6.9076 3.3695 14 6 -0.9270 7.0784 3.0946 15 1 -1.6726 6.7007 3.7787 16 6 -1.3176 7.7377 1.9372 17 7 -0.4090 8.1984 1.1037 18 14 -3.1327 7.9700 1.5618 19 1 -3.7674 8.7531 2.6523 20 1 -3.2831 8.6984 0.2765 21 1 -3.7906 6.6428 1.4580 22 6 2.9978 7.4258 4.6831 23 6 4.5189 7.2622 4.6883 24 6 4.9370 6.4191 5.8947 25 6 4.2762 5.0419 5.8081 26 6 2.7551 5.2055 5.8029 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.9499 -0.8402 0.0004 31 1 2.1958 1.5430 2.4033 32 1 0.7988 2.3497 1.6510 33 1 2.2711 4.1996 0.9025 34 1 3.6676 3.3924 1.6549 35 1 3.4158 5.8004 2.7847 36 1 0.3445 5.2299 4.6268 37 1 0.5098 6.7936 5.4611 38 1 1.0732 7.2471 2.7553 39 1 -0.6818 8.6588 0.2948 40 1 2.6998 8.0264 3.8236 41 1 2.6830 7.9227 5.6007 42 1 4.9897 8.2433 4.7495 43 1 4.8340 6.7649 3.7708 44 1 4.6220 6.9163 6.8121 45 1 6.0208 6.3022 5.8981 46 1 4.5745 4.4411 6.6674 47 1 4.5914 4.5448 4.8907 48 1 2.4400 5.7027 6.7203 49 1 2.2843 4.2244 5.7408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485450330.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:43 Heat of formation + Delta-G solvation = -110.349419 kcal Electronic energy + Delta-G solvation = -30517.765436 eV Core-core repulsion = 26413.744403 eV Total energy + Delta-G solvation = -4104.021033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.35627 -37.86052 -37.18602 -36.04760 -35.16068 -34.66897 -33.26534 -33.05223 -31.16397 -30.65666 -29.26640 -26.16747 -25.27755 -25.17268 -22.99991 -22.28995 -20.88001 -20.32763 -19.43019 -18.82660 -18.11237 -17.25400 -17.14360 -16.47947 -16.19132 -15.59853 -15.39867 -15.06805 -14.76252 -14.38981 -14.13274 -14.10005 -13.82201 -13.55912 -13.25775 -13.21174 -13.01099 -12.88333 -12.54103 -12.28885 -12.18150 -12.12842 -12.07306 -12.01636 -11.79525 -11.74045 -11.43777 -11.25962 -10.99361 -10.89657 -10.85893 -10.76342 -10.52242 -10.19645 -10.08942 -9.93158 -9.75627 -9.63270 -9.24506 -8.76681 -8.52009 -6.83977 -5.72747 -2.99090 0.14364 2.58643 3.00682 3.43509 3.46904 3.51270 3.52147 3.73290 4.14562 4.38523 4.62779 4.76044 4.79104 4.83218 4.88908 4.93047 5.01882 5.24697 5.29761 5.34362 5.35091 5.46929 5.55526 5.57757 5.62129 5.62914 5.65195 5.71353 5.78518 5.79706 5.86034 6.10369 6.14170 6.22494 6.30260 6.32783 6.41744 6.50638 6.59621 6.67624 6.70792 6.91521 7.12355 7.74691 7.91498 8.47055 8.62597 9.58352 10.16213 10.52184 11.50343 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007085 B = 0.004619 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3951.051376 B = 6060.022216 C = 9028.719132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.124 6.124 3 S 2.613 3.387 4 O -0.950 6.950 5 O -0.962 6.962 6 C -0.605 4.605 7 C -0.137 4.137 8 C 0.535 3.465 9 O -0.532 6.532 10 N -0.708 5.708 11 C 0.177 3.823 12 C 0.140 3.860 13 N -0.725 5.725 14 C -0.232 4.232 15 H 0.067 0.933 16 C -0.014 4.014 17 N -0.936 5.936 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.287 1.287 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.127 4.127 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.416 0.584 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.396 0.604 36 H 0.048 0.952 37 H 0.018 0.982 38 H 0.382 0.618 39 H 0.254 0.746 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 -13.048 4.151 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.883 5.883 3 S 2.704 3.296 4 O -0.939 6.939 5 O -0.953 6.953 6 C -0.735 4.735 7 C -0.178 4.178 8 C 0.319 3.681 9 O -0.409 6.409 10 N -0.359 5.359 11 C 0.091 3.909 12 C 0.012 3.988 13 N -0.369 5.369 14 C -0.363 4.363 15 H 0.085 0.915 16 C -0.210 4.210 17 N -0.585 5.585 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.214 1.214 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.166 4.166 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.249 0.751 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.231 0.769 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.216 0.784 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.472 -12.972 4.003 17.145 hybrid contribution -0.790 0.164 -0.112 0.814 sum 9.683 -12.808 3.890 16.520 Atomic orbital electron populations 1.21544 0.78543 1.04150 1.02471 1.55378 1.16095 1.24493 1.92338 1.04973 0.73643 0.73887 0.77059 1.93633 1.78589 1.72014 1.49713 1.93593 1.32839 1.81397 1.87438 1.30317 1.12383 1.07539 1.23259 1.21352 1.01724 0.94968 0.99798 1.19820 0.79986 0.81163 0.87105 1.90612 1.35927 1.62827 1.51487 1.45863 1.45036 1.20040 1.25000 1.20568 0.95631 0.91244 0.83417 1.21096 0.90161 0.96940 0.90649 1.42217 1.04890 1.67640 1.22194 1.19165 0.83860 1.29631 1.03687 0.91524 1.24671 0.97299 1.01549 0.97479 1.69623 1.31571 1.43994 1.13288 0.86299 0.85287 0.77626 0.77174 1.21425 1.21737 1.21412 1.21789 0.94152 0.95943 1.03886 1.21561 0.96231 0.99729 0.98205 1.21548 0.99388 0.96117 0.98528 1.21459 0.95670 0.96652 1.01330 1.21905 0.95486 1.01911 0.97323 0.90081 0.91823 0.91170 0.75069 0.84405 0.83967 0.86899 0.88035 0.76937 0.93422 0.96428 0.78411 0.93580 0.90165 0.90639 0.91964 0.92249 0.92131 0.92567 0.92598 0.92244 0.91567 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 11.03 59.85 0.66 1.27 16 2 N -1.12 -9.56 6.07 -16.63 -0.10 -9.66 16 3 S 2.61 29.90 5.46 -107.50 -0.59 29.31 16 4 O -0.95 -14.77 17.73 -57.54 -1.02 -15.79 16 5 O -0.96 -13.07 18.08 -57.54 -1.04 -14.11 16 6 C -0.61 -6.92 5.31 37.15 0.20 -6.73 16 7 C -0.14 -1.77 5.71 -27.89 -0.16 -1.93 16 8 C 0.53 8.57 7.24 -10.99 -0.08 8.49 16 9 O -0.53 -9.94 12.28 5.55 0.07 -9.87 16 10 N -0.71 -10.54 3.58 -47.60 -0.17 -10.71 16 11 C 0.18 2.78 0.32 -131.81 -0.04 2.74 16 12 C 0.14 2.89 4.80 -4.04 -0.02 2.87 16 13 N -0.73 -17.94 5.19 -59.91 -0.31 -18.25 16 14 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.94 -27.91 13.06 55.49 0.72 -27.19 16 18 Si 0.90 22.73 29.55 -169.99 -5.02 17.70 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C -0.12 -1.70 4.67 -26.73 -0.12 -1.83 16 23 C -0.12 -1.33 5.75 -26.73 -0.15 -1.49 16 24 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 25 C -0.11 -1.30 5.76 -26.73 -0.15 -1.45 16 26 C -0.13 -1.78 4.58 -26.73 -0.12 -1.90 16 27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.45 7.73 -51.93 -0.40 0.05 16 29 H 0.07 0.60 8.04 -51.93 -0.42 0.19 16 30 H 0.42 2.67 8.92 -34.47 -0.31 2.37 16 31 H 0.14 1.36 8.10 -51.92 -0.42 0.93 16 32 H 0.14 1.72 7.73 -51.92 -0.40 1.31 16 33 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 5.05 7.20 -40.82 -0.29 4.76 16 36 H 0.05 1.09 6.26 -51.93 -0.32 0.77 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.38 9.67 6.46 -40.82 -0.26 9.40 16 39 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.08 1.32 7.11 -51.93 -0.37 0.96 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.62 6.78 -51.92 -0.35 0.27 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.08 1.32 6.27 -51.93 -0.33 0.99 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -37.38 394.67 -9.96 -47.34 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -8.05 Total: 13.80 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.40 Total: -8.52 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: 0.14 Total: -65.82 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.99 Total: -39.77 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: 29.90 SS G_CDS: -0.59 Total: 29.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.38 -9.96 -47.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485450330.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.006 kcal (2) G-P(sol) polarization free energy of solvation -37.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds