Wall clock time and date at job start Wed Apr 1 2020 04:11:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 S 1.65591 * 120.00282 * 2 1
4 4 O 1.42096 * 104.27913 * 308.92550 * 3 2 1
5 5 O 1.42105 * 104.27612 * 181.06826 * 3 2 1
6 6 C 1.81403 * 104.45117 * 64.99966 * 3 2 1
7 7 C 1.52992 * 109.47491 * 179.97438 * 6 3 2
8 8 C 1.50696 * 109.47336 * 179.97438 * 7 6 3
9 9 O 1.21285 * 120.00329 * 0.02562 * 8 7 6
10 10 N 1.34779 * 120.00099 * 180.02562 * 8 7 6
11 11 C 1.46505 * 119.99753 * 174.86644 * 10 8 7
12 12 C 1.53001 * 109.47458 * 303.74261 * 11 10 8
13 13 N 1.46505 * 109.47026 * 305.42576 * 12 11 10
14 14 C 1.36933 * 119.99790 * 175.04222 * 13 12 11
15 15 H 1.08003 * 119.99977 * 0.02562 * 14 13 12
16 16 C 1.38814 * 120.00047 * 179.97438 * 14 13 12
17 17 N 1.31619 * 119.99840 * 0.02562 * 16 14 13
18 18 Si 1.86799 * 120.00067 * 179.97438 * 16 14 13
19 19 H 1.48503 * 109.46887 * 60.00543 * 18 16 14
20 20 H 1.48500 * 109.47160 * 180.02562 * 18 16 14
21 21 H 1.48496 * 109.47601 * 300.00610 * 18 16 14
22 22 C 1.53006 * 109.46799 * 183.74102 * 11 10 8
23 23 C 1.52995 * 109.47561 * 300.00292 * 22 11 10
24 24 C 1.53000 * 109.46936 * 300.00338 * 23 22 11
25 25 C 1.52998 * 109.47426 * 59.99670 * 24 23 22
26 26 C 1.52995 * 109.47332 * 300.00088 * 25 24 23
27 27 H 1.08997 * 109.47357 * 179.97438 * 1 2 3
28 28 H 1.08995 * 109.47235 * 300.00186 * 1 2 3
29 29 H 1.09001 * 109.46620 * 60.00181 * 1 2 3
30 30 H 0.97007 * 119.99222 * 179.97438 * 2 1 3
31 31 H 1.09004 * 109.47159 * 59.99664 * 6 3 2
32 32 H 1.09006 * 109.47032 * 300.00144 * 6 3 2
33 33 H 1.09004 * 109.46982 * 59.99815 * 7 6 3
34 34 H 1.08992 * 109.47444 * 300.00355 * 7 6 3
35 35 H 0.97003 * 119.99988 * 354.59763 * 10 8 7
36 36 H 1.09000 * 109.46604 * 65.42033 * 12 11 10
37 37 H 1.08997 * 109.47126 * 185.42089 * 12 11 10
38 38 H 0.96999 * 119.99671 * 355.04051 * 13 12 11
39 39 H 0.96999 * 120.00205 * 179.97438 * 17 16 14
40 40 H 1.09005 * 109.46889 * 60.00631 * 22 11 10
41 41 H 1.08998 * 109.46838 * 180.02562 * 22 11 10
42 42 H 1.08994 * 109.47503 * 179.97438 * 23 22 11
43 43 H 1.09013 * 109.46856 * 59.99685 * 23 22 11
44 44 H 1.08999 * 109.46951 * 299.99330 * 24 23 22
45 45 H 1.09006 * 109.46747 * 179.97438 * 24 23 22
46 46 H 1.09005 * 109.47045 * 179.97438 * 25 24 23
47 47 H 1.08998 * 109.46911 * 60.00225 * 25 24 23
48 48 H 1.09005 * 109.46947 * 300.00571 * 26 25 24
49 49 H 1.08993 * 109.47459 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 16 2.2931 1.4340 0.0000
4 8 1.7190 2.1702 -1.0713
5 8 3.6607 1.0490 -0.0257
6 6 1.8765 2.1973 1.5921
7 6 2.5901 3.5451 1.7137
8 6 2.2435 4.1795 3.0360
9 8 1.4994 3.6094 3.8057
10 7 2.7605 5.3803 3.3635
11 6 2.3369 6.0485 4.5966
12 6 0.8157 6.2122 4.5913
13 7 0.4035 6.9076 3.3695
14 6 -0.9270 7.0784 3.0946
15 1 -1.6726 6.7007 3.7787
16 6 -1.3176 7.7377 1.9372
17 7 -0.4090 8.1984 1.1037
18 14 -3.1327 7.9700 1.5618
19 1 -3.7674 8.7531 2.6523
20 1 -3.2831 8.6984 0.2765
21 1 -3.7906 6.6428 1.4580
22 6 2.9978 7.4258 4.6831
23 6 4.5189 7.2622 4.6883
24 6 4.9370 6.4191 5.8947
25 6 4.2762 5.0419 5.8081
26 6 2.7551 5.2055 5.8029
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8899
29 1 -0.3632 0.5138 -0.8900
30 1 1.9499 -0.8402 0.0004
31 1 2.1958 1.5430 2.4033
32 1 0.7988 2.3497 1.6510
33 1 2.2711 4.1996 0.9025
34 1 3.6676 3.3924 1.6549
35 1 3.4158 5.8004 2.7847
36 1 0.3445 5.2299 4.6268
37 1 0.5098 6.7936 5.4611
38 1 1.0732 7.2471 2.7553
39 1 -0.6818 8.6588 0.2948
40 1 2.6998 8.0264 3.8236
41 1 2.6830 7.9227 5.6007
42 1 4.9897 8.2433 4.7495
43 1 4.8340 6.7649 3.7708
44 1 4.6220 6.9163 6.8121
45 1 6.0208 6.3022 5.8981
46 1 4.5745 4.4411 6.6674
47 1 4.5914 4.5448 4.8907
48 1 2.4400 5.7027 6.7203
49 1 2.2843 4.2244 5.7408
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001485450330.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:11:43
Heat of formation + Delta-G solvation = -110.349419 kcal
Electronic energy + Delta-G solvation = -30517.765436 eV
Core-core repulsion = 26413.744403 eV
Total energy + Delta-G solvation = -4104.021033 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.35627 -37.86052 -37.18602 -36.04760 -35.16068 -34.66897 -33.26534 -33.05223
-31.16397 -30.65666 -29.26640 -26.16747 -25.27755 -25.17268 -22.99991 -22.28995
-20.88001 -20.32763 -19.43019 -18.82660 -18.11237 -17.25400 -17.14360 -16.47947
-16.19132 -15.59853 -15.39867 -15.06805 -14.76252 -14.38981 -14.13274 -14.10005
-13.82201 -13.55912 -13.25775 -13.21174 -13.01099 -12.88333 -12.54103 -12.28885
-12.18150 -12.12842 -12.07306 -12.01636 -11.79525 -11.74045 -11.43777 -11.25962
-10.99361 -10.89657 -10.85893 -10.76342 -10.52242 -10.19645 -10.08942 -9.93158
-9.75627 -9.63270 -9.24506 -8.76681 -8.52009 -6.83977 -5.72747 -2.99090
0.14364 2.58643 3.00682 3.43509 3.46904 3.51270 3.52147 3.73290
4.14562 4.38523 4.62779 4.76044 4.79104 4.83218 4.88908 4.93047
5.01882 5.24697 5.29761 5.34362 5.35091 5.46929 5.55526 5.57757
5.62129 5.62914 5.65195 5.71353 5.78518 5.79706 5.86034 6.10369
6.14170 6.22494 6.30260 6.32783 6.41744 6.50638 6.59621 6.67624
6.70792 6.91521 7.12355 7.74691 7.91498 8.47055 8.62597 9.58352
10.16213 10.52184 11.50343
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.007085 B = 0.004619 C = 0.003100
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3951.051376 B = 6060.022216 C = 9028.719132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.080 3.920
2 N -1.124 6.124
3 S 2.613 3.387
4 O -0.950 6.950
5 O -0.962 6.962
6 C -0.605 4.605
7 C -0.137 4.137
8 C 0.535 3.465
9 O -0.532 6.532
10 N -0.708 5.708
11 C 0.177 3.823
12 C 0.140 3.860
13 N -0.725 5.725
14 C -0.232 4.232
15 H 0.067 0.933
16 C -0.014 4.014
17 N -0.936 5.936
18 Si 0.905 3.095
19 H -0.287 1.287
20 H -0.291 1.291
21 H -0.287 1.287
22 C -0.120 4.120
23 C -0.120 4.120
24 C -0.118 4.118
25 C -0.113 4.113
26 C -0.127 4.127
27 H 0.080 0.920
28 H 0.063 0.937
29 H 0.070 0.930
30 H 0.416 0.584
31 H 0.138 0.862
32 H 0.142 0.858
33 H 0.113 0.887
34 H 0.101 0.899
35 H 0.396 0.604
36 H 0.048 0.952
37 H 0.018 0.982
38 H 0.382 0.618
39 H 0.254 0.746
40 H 0.080 0.920
41 H 0.075 0.925
42 H 0.062 0.938
43 H 0.059 0.941
44 H 0.060 0.940
45 H 0.056 0.944
46 H 0.055 0.945
47 H 0.059 0.941
48 H 0.066 0.934
49 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.800 -13.048 4.151 17.439
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.883 5.883
3 S 2.704 3.296
4 O -0.939 6.939
5 O -0.953 6.953
6 C -0.735 4.735
7 C -0.178 4.178
8 C 0.319 3.681
9 O -0.409 6.409
10 N -0.359 5.359
11 C 0.091 3.909
12 C 0.012 3.988
13 N -0.369 5.369
14 C -0.363 4.363
15 H 0.085 0.915
16 C -0.210 4.210
17 N -0.585 5.585
18 Si 0.736 3.264
19 H -0.214 1.214
20 H -0.217 1.217
21 H -0.214 1.214
22 C -0.158 4.158
23 C -0.157 4.157
24 C -0.156 4.156
25 C -0.151 4.151
26 C -0.166 4.166
27 H 0.099 0.901
28 H 0.082 0.918
29 H 0.088 0.912
30 H 0.249 0.751
31 H 0.156 0.844
32 H 0.160 0.840
33 H 0.131 0.869
34 H 0.120 0.880
35 H 0.231 0.769
36 H 0.066 0.934
37 H 0.036 0.964
38 H 0.216 0.784
39 H 0.064 0.936
40 H 0.098 0.902
41 H 0.094 0.906
42 H 0.080 0.920
43 H 0.078 0.922
44 H 0.079 0.921
45 H 0.074 0.926
46 H 0.074 0.926
47 H 0.078 0.922
48 H 0.084 0.916
49 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 10.472 -12.972 4.003 17.145
hybrid contribution -0.790 0.164 -0.112 0.814
sum 9.683 -12.808 3.890 16.520
Atomic orbital electron populations
1.21544 0.78543 1.04150 1.02471 1.55378 1.16095 1.24493 1.92338
1.04973 0.73643 0.73887 0.77059 1.93633 1.78589 1.72014 1.49713
1.93593 1.32839 1.81397 1.87438 1.30317 1.12383 1.07539 1.23259
1.21352 1.01724 0.94968 0.99798 1.19820 0.79986 0.81163 0.87105
1.90612 1.35927 1.62827 1.51487 1.45863 1.45036 1.20040 1.25000
1.20568 0.95631 0.91244 0.83417 1.21096 0.90161 0.96940 0.90649
1.42217 1.04890 1.67640 1.22194 1.19165 0.83860 1.29631 1.03687
0.91524 1.24671 0.97299 1.01549 0.97479 1.69623 1.31571 1.43994
1.13288 0.86299 0.85287 0.77626 0.77174 1.21425 1.21737 1.21412
1.21789 0.94152 0.95943 1.03886 1.21561 0.96231 0.99729 0.98205
1.21548 0.99388 0.96117 0.98528 1.21459 0.95670 0.96652 1.01330
1.21905 0.95486 1.01911 0.97323 0.90081 0.91823 0.91170 0.75069
0.84405 0.83967 0.86899 0.88035 0.76937 0.93422 0.96428 0.78411
0.93580 0.90165 0.90639 0.91964 0.92249 0.92131 0.92567 0.92598
0.92244 0.91567 0.89893
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.61 11.03 59.85 0.66 1.27 16
2 N -1.12 -9.56 6.07 -16.63 -0.10 -9.66 16
3 S 2.61 29.90 5.46 -107.50 -0.59 29.31 16
4 O -0.95 -14.77 17.73 -57.54 -1.02 -15.79 16
5 O -0.96 -13.07 18.08 -57.54 -1.04 -14.11 16
6 C -0.61 -6.92 5.31 37.15 0.20 -6.73 16
7 C -0.14 -1.77 5.71 -27.89 -0.16 -1.93 16
8 C 0.53 8.57 7.24 -10.99 -0.08 8.49 16
9 O -0.53 -9.94 12.28 5.55 0.07 -9.87 16
10 N -0.71 -10.54 3.58 -47.60 -0.17 -10.71 16
11 C 0.18 2.78 0.32 -131.81 -0.04 2.74 16
12 C 0.14 2.89 4.80 -4.04 -0.02 2.87 16
13 N -0.73 -17.94 5.19 -59.91 -0.31 -18.25 16
14 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16
15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16
16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16
17 N -0.94 -27.91 13.06 55.49 0.72 -27.19 16
18 Si 0.90 22.73 29.55 -169.99 -5.02 17.70 16
19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
22 C -0.12 -1.70 4.67 -26.73 -0.12 -1.83 16
23 C -0.12 -1.33 5.75 -26.73 -0.15 -1.49 16
24 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16
25 C -0.11 -1.30 5.76 -26.73 -0.15 -1.45 16
26 C -0.13 -1.78 4.58 -26.73 -0.12 -1.90 16
27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16
28 H 0.06 0.45 7.73 -51.93 -0.40 0.05 16
29 H 0.07 0.60 8.04 -51.93 -0.42 0.19 16
30 H 0.42 2.67 8.92 -34.47 -0.31 2.37 16
31 H 0.14 1.36 8.10 -51.92 -0.42 0.93 16
32 H 0.14 1.72 7.73 -51.92 -0.40 1.31 16
33 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16
34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16
35 H 0.40 5.05 7.20 -40.82 -0.29 4.76 16
36 H 0.05 1.09 6.26 -51.93 -0.32 0.77 16
37 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16
38 H 0.38 9.67 6.46 -40.82 -0.26 9.40 16
39 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16
40 H 0.08 1.32 7.11 -51.93 -0.37 0.96 16
41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
43 H 0.06 0.62 6.78 -51.92 -0.35 0.27 16
44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
47 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16
48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
49 H 0.08 1.32 6.27 -51.93 -0.33 0.99 16
LS Contribution 394.67 15.07 5.95 5.95
Total: -1.00 -37.38 394.67 -9.96 -47.34
By element:
Atomic # 1 Polarization: 21.84 SS G_CDS: -8.05 Total: 13.80 kcal
Atomic # 6 Polarization: -8.12 SS G_CDS: -0.40 Total: -8.52 kcal
Atomic # 7 Polarization: -65.96 SS G_CDS: 0.14 Total: -65.82 kcal
Atomic # 8 Polarization: -37.77 SS G_CDS: -1.99 Total: -39.77 kcal
Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal
Atomic # 16 Polarization: 29.90 SS G_CDS: -0.59 Total: 29.31 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -37.38 -9.96 -47.34 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485450330.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.006 kcal
(2) G-P(sol) polarization free energy of solvation -37.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.389 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.344 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.349 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds