Wall clock time and date at job start Wed Apr 1 2020 04:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65591 * 120.00282 * 2 1 4 4 O 1.42096 * 104.27913 * 308.92550 * 3 2 1 5 5 O 1.42105 * 104.27612 * 181.06826 * 3 2 1 6 6 C 1.81403 * 104.45117 * 64.99966 * 3 2 1 7 7 C 1.52992 * 109.47491 * 179.97438 * 6 3 2 8 8 C 1.50696 * 109.47336 * 179.97438 * 7 6 3 9 9 O 1.21285 * 120.00329 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00099 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99753 * 174.86644 * 10 8 7 12 12 C 1.53001 * 109.47458 * 303.74261 * 11 10 8 13 13 N 1.46505 * 109.47026 * 305.42576 * 12 11 10 14 14 C 1.36933 * 119.99790 * 175.04222 * 13 12 11 15 15 H 1.08003 * 119.99977 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00047 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99840 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00067 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46887 * 60.00543 * 18 16 14 20 20 H 1.48500 * 109.47160 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47601 * 300.00610 * 18 16 14 22 22 C 1.53006 * 109.46799 * 183.74102 * 11 10 8 23 23 C 1.52995 * 109.47561 * 300.00292 * 22 11 10 24 24 C 1.53000 * 109.46936 * 300.00338 * 23 22 11 25 25 C 1.52998 * 109.47426 * 59.99670 * 24 23 22 26 26 C 1.52995 * 109.47332 * 300.00088 * 25 24 23 27 27 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47235 * 300.00186 * 1 2 3 29 29 H 1.09001 * 109.46620 * 60.00181 * 1 2 3 30 30 H 0.97007 * 119.99222 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47159 * 59.99664 * 6 3 2 32 32 H 1.09006 * 109.47032 * 300.00144 * 6 3 2 33 33 H 1.09004 * 109.46982 * 59.99815 * 7 6 3 34 34 H 1.08992 * 109.47444 * 300.00355 * 7 6 3 35 35 H 0.97003 * 119.99988 * 354.59763 * 10 8 7 36 36 H 1.09000 * 109.46604 * 65.42033 * 12 11 10 37 37 H 1.08997 * 109.47126 * 185.42089 * 12 11 10 38 38 H 0.96999 * 119.99671 * 355.04051 * 13 12 11 39 39 H 0.96999 * 120.00205 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.46889 * 60.00631 * 22 11 10 41 41 H 1.08998 * 109.46838 * 180.02562 * 22 11 10 42 42 H 1.08994 * 109.47503 * 179.97438 * 23 22 11 43 43 H 1.09013 * 109.46856 * 59.99685 * 23 22 11 44 44 H 1.08999 * 109.46951 * 299.99330 * 24 23 22 45 45 H 1.09006 * 109.46747 * 179.97438 * 24 23 22 46 46 H 1.09005 * 109.47045 * 179.97438 * 25 24 23 47 47 H 1.08998 * 109.46911 * 60.00225 * 25 24 23 48 48 H 1.09005 * 109.46947 * 300.00571 * 26 25 24 49 49 H 1.08993 * 109.47459 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4340 0.0000 4 8 1.7190 2.1702 -1.0713 5 8 3.6607 1.0490 -0.0257 6 6 1.8765 2.1973 1.5921 7 6 2.5901 3.5451 1.7137 8 6 2.2435 4.1795 3.0360 9 8 1.4994 3.6094 3.8057 10 7 2.7605 5.3803 3.3635 11 6 2.3369 6.0485 4.5966 12 6 0.8157 6.2122 4.5913 13 7 0.4035 6.9076 3.3695 14 6 -0.9270 7.0784 3.0946 15 1 -1.6726 6.7007 3.7787 16 6 -1.3176 7.7377 1.9372 17 7 -0.4090 8.1984 1.1037 18 14 -3.1327 7.9700 1.5618 19 1 -3.7674 8.7531 2.6523 20 1 -3.2831 8.6984 0.2765 21 1 -3.7906 6.6428 1.4580 22 6 2.9978 7.4258 4.6831 23 6 4.5189 7.2622 4.6883 24 6 4.9370 6.4191 5.8947 25 6 4.2762 5.0419 5.8081 26 6 2.7551 5.2055 5.8029 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.9499 -0.8402 0.0004 31 1 2.1958 1.5430 2.4033 32 1 0.7988 2.3497 1.6510 33 1 2.2711 4.1996 0.9025 34 1 3.6676 3.3924 1.6549 35 1 3.4158 5.8004 2.7847 36 1 0.3445 5.2299 4.6268 37 1 0.5098 6.7936 5.4611 38 1 1.0732 7.2471 2.7553 39 1 -0.6818 8.6588 0.2948 40 1 2.6998 8.0264 3.8236 41 1 2.6830 7.9227 5.6007 42 1 4.9897 8.2433 4.7495 43 1 4.8340 6.7649 3.7708 44 1 4.6220 6.9163 6.8121 45 1 6.0208 6.3022 5.8981 46 1 4.5745 4.4411 6.6674 47 1 4.5914 4.5448 4.8907 48 1 2.4400 5.7027 6.7203 49 1 2.2843 4.2244 5.7408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485450330.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:42 Heat of formation + Delta-G solvation = -139.946848 kcal Electronic energy + Delta-G solvation = -30519.048877 eV Core-core repulsion = 26413.744403 eV Total energy + Delta-G solvation = -4105.304474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60909 -39.05488 -38.23686 -37.10681 -36.38884 -35.89376 -34.63463 -34.23514 -32.94970 -31.69857 -30.76344 -27.02202 -26.84066 -26.24403 -24.67590 -23.47001 -22.14168 -21.46320 -20.34856 -20.04150 -19.21275 -19.09985 -18.25825 -17.43512 -17.25383 -16.82088 -16.63850 -16.40665 -16.13116 -15.73288 -15.29324 -15.14470 -15.02122 -14.78826 -14.66732 -14.61263 -14.22591 -13.81749 -13.77590 -13.57226 -13.40803 -13.26475 -13.16106 -13.11225 -13.02118 -12.83273 -12.74934 -12.60624 -12.54233 -12.40759 -12.13414 -12.01249 -11.91803 -11.85822 -11.43958 -11.14658 -11.09543 -10.96315 -10.53031 -10.38420 -9.82744 -8.93439 -7.94227 -5.20025 -0.80217 1.44724 1.46856 1.53137 1.72260 1.76364 2.30014 2.55759 2.75032 3.20864 3.37279 3.39332 3.67448 3.81079 3.84034 3.89469 3.95820 4.11885 4.20720 4.27297 4.34852 4.48394 4.49375 4.58177 4.61915 4.62363 4.64605 4.80480 4.82009 4.87734 4.89663 4.91695 5.00087 5.13563 5.17704 5.21924 5.27038 5.32791 5.40098 5.46861 5.51613 5.55097 5.77433 6.12290 6.28396 6.70232 7.35950 7.39223 8.11224 8.39482 9.28359 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007085 B = 0.004619 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3951.051376 B = 6060.022216 C = 9028.719132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.113 6.113 3 S 2.639 3.361 4 O -0.993 6.993 5 O -0.982 6.982 6 C -0.601 4.601 7 C -0.144 4.144 8 C 0.525 3.475 9 O -0.563 6.563 10 N -0.703 5.703 11 C 0.183 3.817 12 C 0.140 3.860 13 N -0.728 5.728 14 C -0.242 4.242 15 H 0.062 0.938 16 C -0.067 4.067 17 N -0.962 5.962 18 Si 0.965 3.035 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.113 4.113 25 C -0.108 4.108 26 C -0.121 4.121 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.428 0.572 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.407 0.593 36 H 0.024 0.976 37 H 0.014 0.986 38 H 0.378 0.622 39 H 0.251 0.749 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.070 0.930 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.047 -13.874 4.892 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.875 5.875 3 S 2.731 3.269 4 O -0.983 6.983 5 O -0.972 6.972 6 C -0.731 4.731 7 C -0.185 4.185 8 C 0.311 3.689 9 O -0.442 6.442 10 N -0.355 5.355 11 C 0.097 3.903 12 C 0.013 3.987 13 N -0.372 5.372 14 C -0.375 4.375 15 H 0.080 0.920 16 C -0.260 4.260 17 N -0.613 5.613 18 Si 0.794 3.206 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.210 1.210 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.150 4.150 25 C -0.145 4.145 26 C -0.160 4.160 27 H 0.130 0.870 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.264 0.736 31 H 0.175 0.825 32 H 0.151 0.849 33 H 0.124 0.876 34 H 0.154 0.846 35 H 0.244 0.756 36 H 0.042 0.958 37 H 0.031 0.969 38 H 0.211 0.789 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.747 -13.810 4.757 18.744 hybrid contribution -1.234 0.376 -0.270 1.318 sum 10.513 -13.434 4.487 17.639 Atomic orbital electron populations 1.21756 0.77716 1.06110 1.02158 1.55049 1.16558 1.23970 1.91964 1.04002 0.72850 0.73786 0.76232 1.93581 1.79302 1.73547 1.51858 1.93557 1.34218 1.81741 1.87656 1.30288 1.11752 1.07242 1.23781 1.21485 1.04203 0.95309 0.97551 1.20381 0.79443 0.81246 0.87829 1.90598 1.37224 1.63691 1.52685 1.45846 1.44985 1.19737 1.24945 1.20440 0.92250 0.92867 0.84771 1.21161 0.93968 0.94849 0.88750 1.42281 1.03784 1.67804 1.23288 1.19461 0.85319 1.29065 1.03614 0.92003 1.25384 1.01164 1.01900 0.97551 1.69758 1.33147 1.44860 1.13511 0.85347 0.80821 0.77551 0.76865 1.20582 1.21836 1.20966 1.21709 0.96656 0.94206 1.02608 1.21542 0.93384 1.00955 0.99254 1.21526 1.00546 0.94895 0.98073 1.21429 0.93279 0.97817 1.02002 1.21824 0.97617 1.00197 0.96358 0.87038 0.91354 0.92409 0.73571 0.82546 0.84853 0.87616 0.84552 0.75641 0.95765 0.96859 0.78890 0.94021 0.92847 0.90694 0.90597 0.91429 0.91714 0.90375 0.91178 0.92256 0.91134 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 11.03 127.77 1.41 2.38 16 2 N -1.11 -17.52 6.07 -206.54 -1.25 -18.77 16 3 S 2.64 58.85 5.46 -56.49 -0.31 58.54 16 4 O -0.99 -31.19 17.73 -127.65 -2.26 -33.45 16 5 O -0.98 -25.53 18.08 -127.65 -2.31 -27.84 16 6 C -0.60 -13.42 5.31 71.98 0.38 -13.03 16 7 C -0.14 -3.66 5.71 29.84 0.17 -3.48 16 8 C 0.53 16.82 7.24 87.66 0.63 17.45 16 9 O -0.56 -21.36 12.28 -3.05 -0.04 -21.40 16 10 N -0.70 -20.77 3.58 -422.90 -1.51 -22.28 16 11 C 0.18 5.74 0.32 3.61 0.00 5.74 16 12 C 0.14 5.96 4.80 86.38 0.41 6.38 16 13 N -0.73 -36.99 5.19 -343.44 -1.78 -38.77 16 14 C -0.24 -13.90 9.99 84.03 0.84 -13.06 16 15 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 16 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 17 N -0.96 -58.23 13.06 21.65 0.28 -57.94 16 18 Si 0.96 47.11 29.55 68.60 2.03 49.14 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 21 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 22 C -0.11 -3.16 4.67 30.59 0.14 -3.02 16 23 C -0.11 -2.26 5.75 30.59 0.18 -2.09 16 24 C -0.11 -1.97 5.92 30.59 0.18 -1.79 16 25 C -0.11 -2.20 5.76 30.59 0.18 -2.03 16 26 C -0.12 -3.29 4.58 30.59 0.14 -3.15 16 27 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.91 7.73 -2.39 -0.02 0.89 16 29 H 0.06 0.97 8.04 -2.39 -0.02 0.96 16 30 H 0.43 4.72 8.92 -96.74 -0.86 3.86 16 31 H 0.16 2.88 8.10 -2.39 -0.02 2.86 16 32 H 0.13 3.26 7.73 -2.39 -0.02 3.24 16 33 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.41 10.08 7.20 -92.71 -0.67 9.42 16 36 H 0.02 1.16 6.26 -2.39 -0.01 1.14 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.38 19.64 6.46 -92.71 -0.60 19.04 16 39 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.05 1.78 7.11 -2.38 -0.02 1.76 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.24 6.78 -2.38 -0.02 1.23 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.06 1.23 7.60 -2.39 -0.02 1.21 16 48 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 49 H 0.06 1.96 6.27 -2.39 -0.01 1.94 16 Total: -1.00 -81.19 394.67 -3.17 -84.36 By element: Atomic # 1 Polarization: 42.70 SS G_CDS: -1.15 Total: 41.55 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 5.14 Total: -13.13 kcal Atomic # 7 Polarization: -133.50 SS G_CDS: -4.27 Total: -137.77 kcal Atomic # 8 Polarization: -78.09 SS G_CDS: -4.61 Total: -82.69 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Atomic # 16 Polarization: 58.85 SS G_CDS: -0.31 Total: 58.54 kcal Total: -81.19 -3.17 -84.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485450330.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.587 kcal (2) G-P(sol) polarization free energy of solvation -81.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds