Wall clock time and date at job start Wed Apr 1 2020 05:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48496 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47149 * 300.00636 * 3 2 1 6 6 H 1.48511 * 109.46832 * 60.00471 * 3 2 1 7 7 C 1.38956 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99567 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00276 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99902 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00114 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47212 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00190 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47032 * 34.99904 * 14 13 12 16 16 C 1.53005 * 109.47342 * 154.99755 * 14 13 12 17 17 C 1.52997 * 109.47452 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46817 * 300.00239 * 17 16 14 19 19 H 1.08992 * 109.47063 * 299.99823 * 18 17 16 20 20 N 1.46499 * 109.46799 * 179.97438 * 18 17 16 21 21 C 1.34778 * 119.99771 * 85.00174 * 20 18 17 22 22 O 1.21510 * 120.00113 * 359.97438 * 21 20 18 23 23 C 1.48141 * 119.99719 * 179.97438 * 21 20 18 24 24 C 1.40117 * 121.14106 * 179.71633 * 23 21 20 25 25 C 1.38502 * 117.82106 * 179.73792 * 24 23 21 26 26 N 1.31923 * 119.96764 * 0.54909 * 25 24 23 27 27 N 1.28283 * 122.51659 * 359.70949 * 26 25 24 28 28 C 1.31928 * 122.32353 * 0.02562 * 27 26 25 29 29 C 1.53000 * 109.47233 * 60.00194 * 18 17 16 30 30 C 1.52997 * 109.47060 * 299.99657 * 29 18 17 31 31 H 0.96997 * 119.99755 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99740 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47143 * 59.99596 * 12 10 9 34 34 H 1.09005 * 109.46887 * 299.99674 * 12 10 9 35 35 H 1.00896 * 111.00314 * 56.04414 * 13 12 10 36 36 H 1.09002 * 109.46935 * 60.00090 * 16 14 13 37 37 H 1.09001 * 109.46812 * 300.00432 * 16 14 13 38 38 H 1.08993 * 109.47194 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46695 * 59.99734 * 17 16 14 40 40 H 0.97006 * 120.00568 * 264.99947 * 20 18 17 41 41 H 1.07996 * 121.08743 * 0.02562 * 24 23 21 42 42 H 1.07996 * 120.02175 * 180.24147 * 25 24 23 43 43 H 1.07996 * 120.16805 * 180.02562 * 28 27 26 44 44 H 1.09002 * 109.47398 * 59.99826 * 29 18 17 45 45 H 1.09001 * 109.47194 * 180.02562 * 29 18 17 46 46 H 1.08996 * 109.47853 * 180.02562 * 30 29 18 47 47 H 1.09002 * 109.47153 * 300.00319 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3963 1.2127 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8629 -0.0011 13 7 2.1982 -5.9795 -0.0016 14 6 1.4979 -7.2708 -0.0016 15 1 0.5844 -7.1888 -0.5907 16 6 2.4037 -8.3424 -0.6118 17 6 1.6741 -9.6872 -0.6123 18 6 1.3205 -10.0761 0.8246 19 1 2.2336 -10.1584 1.4139 20 7 0.6213 -11.3635 0.8240 21 6 1.3255 -12.5127 0.8233 22 8 2.5402 -12.4809 0.8227 23 6 0.6185 -13.8145 0.8233 24 6 1.3265 -15.0236 0.8167 25 6 0.5962 -16.2004 0.8227 26 7 -0.7224 -16.1576 0.8233 27 7 -1.3765 -15.0541 0.8240 28 6 -0.7773 -13.8788 0.8237 29 6 0.4145 -9.0046 1.4347 30 6 1.1441 -7.6598 1.4352 31 1 -0.4849 0.8400 0.0004 32 1 0.3533 -2.3906 0.0002 33 1 0.6172 -4.9204 -0.8913 34 1 0.6167 -4.9208 0.8887 35 1 2.8331 -5.9129 0.7797 36 1 3.3171 -8.4244 -0.0226 37 1 2.6553 -8.0654 -1.6355 38 1 2.3193 -10.4504 -1.0474 39 1 0.7609 -9.6048 -1.2016 40 1 -0.3484 -11.3889 0.8241 41 1 2.4064 -15.0374 0.8118 42 1 1.1057 -17.1526 0.8218 43 1 -1.3625 -12.9712 0.8247 44 1 -0.4987 -8.9223 0.8453 45 1 0.1630 -9.2814 2.4585 46 1 0.4990 -6.8965 1.8703 47 1 2.0574 -7.7421 2.0246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495469263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:32 Heat of formation + Delta-G solvation = -21.958018 kcal Electronic energy + Delta-G solvation = -28903.676061 eV Core-core repulsion = 24700.336766 eV Total energy + Delta-G solvation = -4203.339295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.81801 -40.35522 -38.92411 -37.99271 -35.66054 -34.16993 -33.87779 -33.45246 -32.70413 -31.22480 -31.05610 -29.01370 -26.52801 -25.60652 -25.11681 -23.93576 -23.00926 -22.04023 -21.21559 -20.44474 -19.24812 -18.75484 -18.28862 -17.88861 -17.04375 -16.59932 -16.29915 -15.92643 -15.82356 -15.35642 -15.05181 -14.80219 -14.65914 -14.45213 -14.25556 -14.17948 -14.04425 -13.78138 -13.35923 -13.05062 -12.95565 -12.48405 -12.15126 -11.81339 -11.65588 -11.63273 -11.44574 -11.40754 -11.32188 -11.08040 -10.96648 -10.87659 -10.79616 -10.73475 -10.52693 -10.35206 -10.24055 -10.21026 -9.57183 -9.53079 -8.46624 -8.04183 -7.96413 -6.43093 -3.83757 -0.31947 0.19974 2.16875 2.36668 3.00665 3.15444 3.26152 3.33527 3.39643 3.62024 3.85527 3.89284 3.90723 4.07487 4.18702 4.28047 4.33549 4.44049 4.61126 4.82910 4.85051 4.94912 4.99103 5.11156 5.14545 5.15317 5.20935 5.23116 5.25447 5.41997 5.49332 5.54605 5.64705 5.71187 5.77498 5.87082 5.93801 5.95960 6.01843 6.17097 6.23859 6.30431 6.81699 7.24244 7.50190 7.54358 7.66504 7.97999 8.05613 8.60164 9.17026 9.53293 10.04794 10.74737 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.039749 B = 0.001462 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.249407 B =19146.239086 C =19589.406993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.663 5.663 14 C 0.086 3.914 15 H 0.077 0.923 16 C -0.103 4.103 17 C -0.127 4.127 18 C 0.144 3.856 19 H 0.093 0.907 20 N -0.715 5.715 21 C 0.562 3.438 22 O -0.519 6.519 23 C -0.132 4.132 24 C -0.057 4.057 25 C 0.040 3.960 26 N -0.227 5.227 27 N -0.241 5.241 28 C 0.069 3.931 29 C -0.121 4.121 30 C -0.148 4.148 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.350 0.650 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.400 0.600 41 H 0.165 0.835 42 H 0.182 0.818 43 H 0.175 0.825 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -29.113 2.697 29.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.294 5.294 14 C -0.024 4.024 15 H 0.095 0.905 16 C -0.142 4.142 17 C -0.166 4.166 18 C 0.040 3.960 19 H 0.111 0.889 20 N -0.366 5.366 21 C 0.346 3.654 22 O -0.395 6.395 23 C -0.146 4.146 24 C -0.087 4.087 25 C -0.124 4.124 26 N -0.069 5.069 27 N -0.082 5.082 28 C -0.096 4.096 29 C -0.160 4.160 30 C -0.188 4.188 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.170 0.830 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.235 0.765 41 H 0.183 0.817 42 H 0.199 0.801 43 H 0.192 0.808 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.846 -29.702 2.012 30.018 hybrid contribution 0.217 1.666 0.923 1.917 sum -3.628 -28.036 2.935 28.422 Atomic orbital electron populations 1.69619 1.05939 1.28037 1.50755 1.25258 0.95631 0.99713 0.97338 0.85805 0.79738 0.81135 0.77697 1.19204 1.20744 1.20781 1.19763 0.93417 0.82247 1.47435 0.87867 1.41872 1.09179 1.04629 1.64427 1.19842 0.88410 0.84757 0.84441 1.90528 1.13778 1.87077 1.55316 1.21703 0.94424 0.91019 1.01035 1.60176 1.18399 0.99583 1.51258 1.21658 0.96859 0.89696 0.94205 0.90468 1.21441 0.98323 0.91986 1.02437 1.21918 1.01111 0.97993 0.95570 1.21198 0.96363 0.80619 0.97771 0.88851 1.46024 1.10344 1.05761 1.74461 1.17899 0.87089 0.83272 0.77097 1.90832 1.12920 1.87125 1.48608 1.21285 0.95183 0.95695 1.02486 1.22694 1.03425 0.91329 0.91259 1.24470 0.92245 0.99911 0.95793 1.72940 1.07914 1.19691 1.06404 1.73116 1.31524 0.94779 1.08752 1.24559 0.92034 0.99381 0.93607 1.21743 0.98595 0.94466 1.01151 1.22288 1.01114 0.96216 0.99187 0.91943 0.77496 0.89696 0.93933 0.83025 0.91538 0.90552 0.91294 0.91608 0.76477 0.81747 0.80061 0.80816 0.91078 0.91267 0.91126 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 10 C 0.44 10.24 7.82 -10.99 -0.09 10.15 16 11 O -0.58 -15.73 15.78 5.54 0.09 -15.65 16 12 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 13 N -0.66 -10.10 5.87 -107.99 -0.63 -10.74 16 14 C 0.09 0.94 2.47 -67.71 -0.17 0.77 16 15 H 0.08 0.82 7.80 -51.93 -0.40 0.41 16 16 C -0.10 -1.05 5.53 -26.73 -0.15 -1.20 16 17 C -0.13 -1.05 5.49 -26.73 -0.15 -1.20 16 18 C 0.14 1.06 2.45 -67.93 -0.17 0.89 16 19 H 0.09 0.87 7.58 -51.93 -0.39 0.47 16 20 N -0.71 -4.18 5.04 -54.66 -0.28 -4.46 16 21 C 0.56 4.41 7.77 -12.19 -0.09 4.32 16 22 O -0.52 -5.93 16.15 5.36 0.09 -5.84 16 23 C -0.13 -0.84 5.92 -104.57 -0.62 -1.46 16 24 C -0.06 -0.31 9.77 -38.78 -0.38 -0.69 16 25 C 0.04 0.21 11.30 -17.42 -0.20 0.01 16 26 N -0.23 -1.88 11.48 30.53 0.35 -1.53 16 27 N -0.24 -2.02 11.49 30.78 0.35 -1.67 16 28 C 0.07 0.40 10.84 -16.96 -0.18 0.21 16 29 C -0.12 -0.79 5.39 -26.73 -0.14 -0.93 16 30 C -0.15 -1.33 5.17 -26.73 -0.14 -1.47 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 33 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 34 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 35 H 0.35 5.58 8.17 -39.29 -0.32 5.26 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.40 1.21 6.76 -40.82 -0.28 0.93 16 41 H 0.16 0.71 7.80 -52.49 -0.41 0.30 16 42 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 43 H 0.17 0.41 6.53 -52.49 -0.34 0.06 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.67 7.46 -51.93 -0.39 0.28 16 47 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -34.94 392.10 -7.77 -42.71 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.55 Total: 10.89 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.74 Total: 2.28 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.46 Total: -56.21 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.17 Total: -21.49 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.94 -7.77 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495469263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.752 kcal (2) G-P(sol) polarization free energy of solvation -34.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds