Wall clock time and date at job start Wed Apr 1 2020 05:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48496 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47149 * 300.00636 * 3 2 1 6 6 H 1.48511 * 109.46832 * 60.00471 * 3 2 1 7 7 C 1.38956 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99567 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00276 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99902 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00114 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47212 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00190 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47032 * 34.99904 * 14 13 12 16 16 C 1.53005 * 109.47342 * 154.99755 * 14 13 12 17 17 C 1.52997 * 109.47452 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46817 * 300.00239 * 17 16 14 19 19 H 1.08992 * 109.47063 * 299.99823 * 18 17 16 20 20 N 1.46499 * 109.46799 * 179.97438 * 18 17 16 21 21 C 1.34778 * 119.99771 * 85.00174 * 20 18 17 22 22 O 1.21510 * 120.00113 * 359.97438 * 21 20 18 23 23 C 1.48141 * 119.99719 * 179.97438 * 21 20 18 24 24 C 1.40117 * 121.14106 * 179.71633 * 23 21 20 25 25 C 1.38502 * 117.82106 * 179.73792 * 24 23 21 26 26 N 1.31923 * 119.96764 * 0.54909 * 25 24 23 27 27 N 1.28283 * 122.51659 * 359.70949 * 26 25 24 28 28 C 1.31928 * 122.32353 * 0.02562 * 27 26 25 29 29 C 1.53000 * 109.47233 * 60.00194 * 18 17 16 30 30 C 1.52997 * 109.47060 * 299.99657 * 29 18 17 31 31 H 0.96997 * 119.99755 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99740 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47143 * 59.99596 * 12 10 9 34 34 H 1.09005 * 109.46887 * 299.99674 * 12 10 9 35 35 H 1.00896 * 111.00314 * 56.04414 * 13 12 10 36 36 H 1.09002 * 109.46935 * 60.00090 * 16 14 13 37 37 H 1.09001 * 109.46812 * 300.00432 * 16 14 13 38 38 H 1.08993 * 109.47194 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46695 * 59.99734 * 17 16 14 40 40 H 0.97006 * 120.00568 * 264.99947 * 20 18 17 41 41 H 1.07996 * 121.08743 * 0.02562 * 24 23 21 42 42 H 1.07996 * 120.02175 * 180.24147 * 25 24 23 43 43 H 1.07996 * 120.16805 * 180.02562 * 28 27 26 44 44 H 1.09002 * 109.47398 * 59.99826 * 29 18 17 45 45 H 1.09001 * 109.47194 * 180.02562 * 29 18 17 46 46 H 1.08996 * 109.47853 * 180.02562 * 30 29 18 47 47 H 1.09002 * 109.47153 * 300.00319 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3963 1.2127 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8629 -0.0011 13 7 2.1982 -5.9795 -0.0016 14 6 1.4979 -7.2708 -0.0016 15 1 0.5844 -7.1888 -0.5907 16 6 2.4037 -8.3424 -0.6118 17 6 1.6741 -9.6872 -0.6123 18 6 1.3205 -10.0761 0.8246 19 1 2.2336 -10.1584 1.4139 20 7 0.6213 -11.3635 0.8240 21 6 1.3255 -12.5127 0.8233 22 8 2.5402 -12.4809 0.8227 23 6 0.6185 -13.8145 0.8233 24 6 1.3265 -15.0236 0.8167 25 6 0.5962 -16.2004 0.8227 26 7 -0.7224 -16.1576 0.8233 27 7 -1.3765 -15.0541 0.8240 28 6 -0.7773 -13.8788 0.8237 29 6 0.4145 -9.0046 1.4347 30 6 1.1441 -7.6598 1.4352 31 1 -0.4849 0.8400 0.0004 32 1 0.3533 -2.3906 0.0002 33 1 0.6172 -4.9204 -0.8913 34 1 0.6167 -4.9208 0.8887 35 1 2.8331 -5.9129 0.7797 36 1 3.3171 -8.4244 -0.0226 37 1 2.6553 -8.0654 -1.6355 38 1 2.3193 -10.4504 -1.0474 39 1 0.7609 -9.6048 -1.2016 40 1 -0.3484 -11.3889 0.8241 41 1 2.4064 -15.0374 0.8118 42 1 1.1057 -17.1526 0.8218 43 1 -1.3625 -12.9712 0.8247 44 1 -0.4987 -8.9223 0.8453 45 1 0.1630 -9.2814 2.4585 46 1 0.4990 -6.8965 1.8703 47 1 2.0574 -7.7421 2.0246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495469263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:31 Heat of formation + Delta-G solvation = -49.557210 kcal Electronic energy + Delta-G solvation = -28904.872851 eV Core-core repulsion = 24700.336766 eV Total energy + Delta-G solvation = -4204.536085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.30778 -41.00036 -40.22115 -39.31124 -36.61756 -35.88855 -34.71509 -34.04939 -33.43641 -33.19453 -31.75343 -30.00552 -27.77210 -26.54037 -25.66601 -25.34333 -23.73966 -22.77453 -21.85575 -21.38861 -20.85738 -19.89603 -19.31067 -18.76891 -17.88891 -17.44301 -17.10932 -16.90524 -16.49388 -16.39475 -16.28862 -16.04993 -15.75244 -15.57747 -15.29448 -15.06996 -14.92717 -14.58547 -14.44433 -14.22658 -13.90450 -13.57228 -13.46425 -13.22316 -13.07088 -12.83185 -12.43610 -12.36433 -12.18149 -12.11110 -12.08365 -12.03742 -11.62726 -11.53080 -11.48941 -11.38140 -11.28113 -11.25020 -10.75726 -10.32940 -10.18842 -10.00593 -9.21654 -8.46570 -5.94985 -0.80514 -0.19721 1.36750 1.42291 1.56239 1.60175 1.81825 2.06531 2.29671 2.53670 2.94487 3.01160 3.18288 3.21051 3.45508 3.47865 3.55296 3.67567 3.77283 3.80261 4.07022 4.15315 4.27125 4.33162 4.36104 4.40069 4.49153 4.51690 4.54708 4.56296 4.63081 4.72010 4.75288 4.87440 4.98909 5.05792 5.11452 5.19223 5.21167 5.28385 5.40714 5.41699 5.46617 5.94197 6.18479 6.32430 6.45593 6.61246 6.97599 7.13637 7.52244 7.57478 8.13241 8.70961 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.039749 B = 0.001462 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.249407 B =19146.239086 C =19589.406993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.626 6.626 12 C 0.068 3.932 13 N -0.681 5.681 14 C 0.089 3.911 15 H 0.090 0.910 16 C -0.099 4.099 17 C -0.117 4.117 18 C 0.149 3.851 19 H 0.072 0.928 20 N -0.699 5.699 21 C 0.564 3.436 22 O -0.561 6.561 23 C -0.140 4.140 24 C -0.056 4.056 25 C 0.047 3.953 26 N -0.259 5.259 27 N -0.272 5.272 28 C 0.078 3.922 29 C -0.111 4.111 30 C -0.144 4.144 31 H 0.277 0.723 32 H 0.397 0.603 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.342 0.658 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.417 0.583 41 H 0.175 0.825 42 H 0.215 0.785 43 H 0.206 0.794 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 -29.789 2.913 30.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.065 4.065 13 N -0.312 5.312 14 C -0.020 4.020 15 H 0.108 0.892 16 C -0.138 4.138 17 C -0.157 4.157 18 C 0.045 3.955 19 H 0.090 0.910 20 N -0.351 5.351 21 C 0.350 3.650 22 O -0.439 6.439 23 C -0.154 4.154 24 C -0.086 4.086 25 C -0.118 4.118 26 N -0.100 5.100 27 N -0.112 5.112 28 C -0.088 4.088 29 C -0.149 4.149 30 C -0.184 4.184 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.161 0.839 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.255 0.745 41 H 0.192 0.808 42 H 0.231 0.769 43 H 0.223 0.777 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.631 -30.404 2.227 31.001 hybrid contribution 0.811 1.825 0.839 2.166 sum -4.820 -28.579 3.066 29.145 Atomic orbital electron populations 1.69669 1.06753 1.29205 1.50390 1.26004 0.96533 1.02294 0.96280 0.84893 0.78014 0.77218 0.78339 1.19931 1.19634 1.19537 1.19699 0.92677 0.84147 1.49900 0.90486 1.41932 1.09331 1.04691 1.65093 1.20997 0.88282 0.86319 0.82066 1.90496 1.16042 1.88021 1.56657 1.21550 0.94012 0.87865 1.03049 1.60171 1.18841 1.00893 1.51332 1.21729 0.96860 0.87554 0.95871 0.89216 1.21370 0.98136 0.93055 1.01242 1.21812 1.01228 0.96175 0.96440 1.21028 0.96157 0.81551 0.96802 0.90966 1.45844 1.11159 1.04733 1.73359 1.18084 0.86608 0.84033 0.76283 1.90819 1.14711 1.87681 1.50710 1.21231 0.95568 0.95193 1.03447 1.22938 1.04055 0.91324 0.90268 1.24934 0.91326 1.01172 0.94353 1.72845 1.09330 1.20238 1.07586 1.73042 1.32489 0.95492 1.10215 1.24944 0.91916 0.99741 0.92195 1.21675 0.98587 0.92330 1.02344 1.22198 1.01115 0.97699 0.97362 0.91306 0.76917 0.87850 0.91309 0.83871 0.92859 0.91957 0.92642 0.89914 0.74455 0.80765 0.76877 0.77741 0.88897 0.89901 0.91032 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -29.07 5.29 -306.99 -1.62 -30.69 16 10 C 0.44 20.46 7.82 87.66 0.69 21.15 16 11 O -0.63 -34.74 15.78 -3.08 -0.05 -34.79 16 12 C 0.07 2.19 5.96 85.56 0.51 2.70 16 13 N -0.68 -20.34 5.87 -495.57 -2.91 -23.25 16 14 C 0.09 1.80 2.47 44.92 0.11 1.91 16 15 H 0.09 1.62 7.80 -2.39 -0.02 1.60 16 16 C -0.10 -1.97 5.53 30.60 0.17 -1.81 16 17 C -0.12 -1.77 5.49 30.59 0.17 -1.61 16 18 C 0.15 1.92 2.45 44.99 0.11 2.03 16 19 H 0.07 1.30 7.58 -2.39 -0.02 1.28 16 20 N -0.70 -6.55 5.04 -445.14 -2.24 -8.79 16 21 C 0.56 8.12 7.77 86.87 0.67 8.79 16 22 O -0.56 -12.63 16.15 -3.75 -0.06 -12.69 16 23 C -0.14 -1.57 5.92 -19.83 -0.12 -1.69 16 24 C -0.06 -0.54 9.77 22.79 0.22 -0.32 16 25 C 0.05 0.42 11.30 84.74 0.96 1.38 16 26 N -0.26 -4.04 11.48 -57.33 -0.66 -4.70 16 27 N -0.27 -4.26 11.49 -56.54 -0.65 -4.91 16 28 C 0.08 0.75 10.84 85.04 0.92 1.67 16 29 C -0.11 -1.10 5.39 30.59 0.16 -0.93 16 30 C -0.14 -2.28 5.17 30.59 0.16 -2.12 16 31 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 32 H 0.40 18.95 7.90 -92.71 -0.73 18.21 16 33 H 0.10 3.01 8.06 -2.39 -0.02 2.99 16 34 H 0.07 1.90 7.44 -2.38 -0.02 1.88 16 35 H 0.34 11.02 8.17 -89.70 -0.73 10.29 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.42 1.06 6.76 -92.70 -0.63 0.43 16 41 H 0.17 1.30 7.80 -2.91 -0.02 1.28 16 42 H 0.21 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.21 0.33 6.53 -2.91 -0.02 0.32 16 44 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 1.16 7.46 -2.39 -0.02 1.14 16 47 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 Total: -1.00 -78.05 392.10 -0.92 -78.97 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -1.05 Total: 31.96 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.02 Total: 12.86 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -7.80 Total: -121.07 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -0.11 Total: -47.48 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -78.05 -0.92 -78.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495469263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.412 kcal (2) G-P(sol) polarization free energy of solvation -78.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds