Wall clock time and date at job start Wed Apr 1 2020 05:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48500 * 109.47210 * 270.00114 * 3 2 1 5 5 H 1.48506 * 109.47251 * 29.99788 * 3 2 1 6 6 H 1.48504 * 109.47424 * 149.99882 * 3 2 1 7 7 C 1.38958 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99408 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 N 1.46896 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99733 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.46873 * 35.00175 * 14 13 12 16 16 C 1.52998 * 109.46870 * 274.99788 * 14 13 12 17 17 C 1.53004 * 109.46739 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47180 * 60.00333 * 17 16 14 19 19 C 1.53001 * 109.46704 * 299.99698 * 18 17 16 20 20 H 1.09006 * 109.47260 * 299.99799 * 19 18 17 21 21 N 1.46505 * 109.46980 * 180.02562 * 19 18 17 22 22 C 1.34775 * 120.00249 * 84.99997 * 21 19 18 23 23 O 1.21550 * 119.99744 * 359.97438 * 22 21 19 24 24 C 1.47829 * 119.99768 * 180.02562 * 22 21 19 25 25 C 1.39951 * 120.94298 * 359.71361 * 24 22 21 26 26 N 1.32146 * 118.92494 * 179.69642 * 25 24 22 27 27 C 1.31871 * 120.96486 * 0.62126 * 26 25 24 28 28 N 1.31871 * 122.09619 * 359.64999 * 27 26 25 29 29 C 1.32148 * 120.96933 * 0.02576 * 28 27 26 30 30 C 1.52995 * 109.47440 * 60.00375 * 19 18 17 31 31 H 0.97004 * 119.99848 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 34 34 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 35 35 H 1.00897 * 111.00226 * 56.04425 * 13 12 10 36 36 H 1.09001 * 109.46983 * 299.99700 * 16 14 13 37 37 H 1.08999 * 109.46879 * 60.00373 * 16 14 13 38 38 H 1.08999 * 109.46614 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47023 * 299.99535 * 17 16 14 40 40 H 1.08992 * 109.47242 * 59.99519 * 18 17 16 41 41 H 1.09005 * 109.46922 * 180.02562 * 18 17 16 42 42 H 0.97003 * 119.99704 * 264.99963 * 21 19 18 43 43 H 1.08002 * 120.53537 * 359.97438 * 25 24 22 44 44 H 1.08002 * 118.95544 * 179.67940 * 27 26 25 45 45 H 1.08000 * 120.53803 * 180.02562 * 29 28 27 46 46 H 1.09002 * 109.47443 * 180.02562 * 30 19 18 47 47 H 1.09006 * 109.47365 * 59.99487 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0072 11 8 3.4473 -3.4210 0.0072 12 6 5.5607 -2.3706 0.0141 13 7 6.0503 -3.7555 0.0194 14 6 7.5188 -3.7947 0.0268 15 1 7.9015 -2.9617 0.6164 16 6 8.0391 -3.6856 -1.4079 17 6 9.5685 -3.7271 -1.4002 18 6 10.0399 -5.0466 -0.7857 19 6 9.5196 -5.1556 0.6489 20 1 9.9027 -4.3228 1.2387 21 7 9.9714 -6.4188 1.2376 22 6 11.1888 -6.4980 1.8104 23 8 11.9121 -5.5215 1.8381 24 6 11.6449 -7.7728 2.4038 25 6 10.8264 -8.9079 2.3871 26 7 11.2765 -10.0285 2.9237 27 6 12.4713 -10.0826 3.4792 28 7 13.2724 -9.0360 3.5217 29 6 12.9051 -7.8771 3.0035 30 6 7.9902 -5.1142 0.6414 31 1 -0.4850 0.8401 0.0004 32 1 3.8649 -0.3633 0.0014 33 1 5.9281 -1.8591 -0.8755 34 1 5.9200 -1.8543 0.9044 35 1 5.6784 -4.2736 -0.7625 36 1 7.6564 -4.5188 -1.9974 37 1 7.7029 -2.7458 -1.8458 38 1 9.9391 -3.6498 -2.4224 39 1 9.9516 -2.8942 -0.8105 40 1 9.6568 -5.8793 -1.3754 41 1 11.1296 -5.0759 -0.7799 42 1 9.3944 -7.1982 1.2151 43 1 9.8445 -8.8698 1.9389 44 1 12.8046 -11.0140 3.9128 45 1 13.5669 -7.0245 3.0418 46 1 7.6195 -5.1914 1.6635 47 1 7.6071 -5.9470 0.0516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567162156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:05 Heat of formation + Delta-G solvation = -25.406767 kcal Electronic energy + Delta-G solvation = -29163.798254 eV Core-core repulsion = 24960.309410 eV Total energy + Delta-G solvation = -4203.488843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77484 -40.26887 -38.94734 -38.12842 -35.54591 -34.51200 -34.06085 -33.65974 -32.74691 -31.68615 -30.33065 -29.25891 -26.32351 -25.85095 -25.13341 -23.85813 -22.77908 -22.16532 -20.98395 -20.47101 -19.39974 -18.70163 -18.33064 -18.23095 -17.72816 -16.64650 -15.92585 -15.77961 -15.51227 -15.26939 -14.97718 -14.95588 -14.75495 -14.53361 -14.25857 -14.18672 -14.03924 -13.71515 -13.37665 -13.05455 -13.01781 -12.62598 -12.43099 -12.22920 -11.98766 -11.86260 -11.60599 -11.52442 -11.36987 -11.19827 -11.05470 -10.85004 -10.74623 -10.61337 -10.36906 -10.34143 -9.99395 -9.92410 -9.59236 -9.51269 -8.62318 -8.21727 -8.14793 -6.32982 -3.84480 -0.17946 0.40401 2.31135 2.50813 3.01218 3.05006 3.13722 3.22174 3.41492 3.53185 3.71813 3.80507 3.95667 4.07061 4.08641 4.27992 4.42541 4.59466 4.67286 4.69626 4.83206 4.89268 4.94569 5.07831 5.12867 5.16373 5.20506 5.25802 5.37853 5.54176 5.59597 5.63333 5.70203 5.74638 5.78638 5.81265 5.91046 5.93948 5.99711 6.09375 6.14280 6.21368 6.92869 7.06639 7.35917 7.53420 7.56468 7.62964 8.12507 8.57716 8.93033 9.40495 9.80554 10.80087 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.001693 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.870120 B =16536.444189 C =17074.917100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.565 6.565 12 C 0.048 3.952 13 N -0.663 5.663 14 C 0.093 3.907 15 H 0.080 0.920 16 C -0.154 4.154 17 C -0.111 4.111 18 C -0.129 4.129 19 C 0.147 3.853 20 H 0.092 0.908 21 N -0.716 5.716 22 C 0.570 3.430 23 O -0.527 6.527 24 C -0.242 4.242 25 C 0.185 3.815 26 N -0.521 5.521 27 C 0.315 3.685 28 N -0.522 5.522 29 C 0.209 3.791 30 C -0.114 4.114 31 H 0.273 0.727 32 H 0.370 0.630 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.352 0.648 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.400 0.600 43 H 0.173 0.827 44 H 0.203 0.797 45 H 0.182 0.818 46 H 0.079 0.921 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.222 -13.853 1.417 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.294 5.294 14 C -0.018 4.018 15 H 0.098 0.902 16 C -0.194 4.194 17 C -0.150 4.150 18 C -0.167 4.167 19 C 0.042 3.958 20 H 0.110 0.890 21 N -0.367 5.367 22 C 0.355 3.645 23 O -0.404 6.404 24 C -0.250 4.250 25 C 0.017 3.983 26 N -0.234 5.234 27 C 0.028 3.972 28 N -0.235 5.235 29 C 0.042 3.958 30 C -0.153 4.153 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.172 0.828 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.235 0.765 43 H 0.190 0.810 44 H 0.220 0.780 45 H 0.199 0.801 46 H 0.098 0.902 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 27.334 -14.676 2.529 31.128 hybrid contribution 0.118 2.055 -1.300 2.435 sum 27.452 -12.621 1.229 30.239 Atomic orbital electron populations 1.69620 1.05649 1.27509 1.49298 1.25041 0.95494 0.97980 0.97626 0.86673 0.79821 0.84047 0.78853 1.19665 1.20152 1.19465 1.19433 0.79258 0.96629 1.48130 0.86286 1.42210 1.07538 1.06179 1.67045 1.19720 0.88218 0.84559 0.84012 1.90564 1.69465 1.30935 1.53763 1.21735 0.94956 0.90497 1.01269 1.60107 1.05364 1.12577 1.51370 1.21477 0.88172 0.97436 0.94718 0.90215 1.22381 0.96099 1.02535 0.98352 1.21405 0.95389 0.97229 1.00969 1.21930 1.01100 0.98416 0.95265 1.21081 0.94672 0.85899 0.94113 0.88952 1.45978 1.17093 1.14791 1.58826 1.17752 0.81863 0.86970 0.77925 1.90815 1.54315 1.37128 1.58159 1.21849 0.99334 0.96942 1.06861 1.23524 0.98541 0.86760 0.89441 1.68503 1.16361 1.27646 1.10889 1.25340 0.85146 0.97302 0.89383 1.68607 1.36018 1.00255 1.18622 1.23562 0.91972 0.95285 0.84970 1.21757 0.92055 0.98588 1.02864 0.91602 0.79693 0.93679 0.89491 0.82817 0.91423 0.91588 0.91624 0.91586 0.91628 0.91487 0.76502 0.81040 0.78026 0.80072 0.90184 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.17 27.74 -169.99 -4.71 14.45 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 10 C 0.45 9.92 7.82 -10.98 -0.09 9.84 16 11 O -0.57 -14.84 15.78 5.55 0.09 -14.75 16 12 C 0.05 0.75 5.97 -4.98 -0.03 0.72 16 13 N -0.66 -9.27 5.87 -107.99 -0.63 -9.91 16 14 C 0.09 0.94 2.47 -67.71 -0.17 0.77 16 15 H 0.08 0.81 7.80 -51.93 -0.40 0.40 16 16 C -0.15 -1.35 5.17 -26.73 -0.14 -1.49 16 17 C -0.11 -0.85 5.92 -26.73 -0.16 -1.01 16 18 C -0.13 -0.96 5.49 -26.73 -0.15 -1.11 16 19 C 0.15 1.14 2.45 -67.93 -0.17 0.97 16 20 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 21 N -0.72 -4.70 5.04 -54.75 -0.28 -4.97 16 22 C 0.57 4.79 7.75 -12.34 -0.10 4.69 16 23 O -0.53 -6.17 16.11 5.32 0.09 -6.09 16 24 C -0.24 -1.71 5.91 -104.69 -0.62 -2.33 16 25 C 0.18 1.09 10.81 -16.78 -0.18 0.91 16 26 N -0.52 -3.67 10.42 -14.24 -0.15 -3.82 16 27 C 0.31 1.99 12.27 -92.02 -1.13 0.86 16 28 N -0.52 -3.98 10.42 -14.24 -0.15 -4.13 16 29 C 0.21 1.55 10.88 -16.77 -0.18 1.37 16 30 C -0.11 -0.96 5.00 -26.73 -0.13 -1.09 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 33 H 0.05 0.61 7.43 -51.93 -0.39 0.22 16 34 H 0.09 1.24 8.06 -51.93 -0.42 0.82 16 35 H 0.35 5.14 8.17 -39.29 -0.32 4.82 16 36 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 37 H 0.07 0.62 7.45 -51.93 -0.39 0.23 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.40 1.63 6.74 -40.82 -0.28 1.35 16 43 H 0.17 0.49 6.54 -52.49 -0.34 0.15 16 44 H 0.20 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.18 1.18 7.74 -52.49 -0.41 0.77 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -35.29 388.74 -9.16 -44.45 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.51 Total: 12.15 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -3.48 Total: 5.42 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.49 Total: -61.49 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.17 Total: -20.84 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.29 -9.16 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567162156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.042 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds