Wall clock time and date at job start Wed Apr 1 2020 05:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48500 * 109.47210 * 270.00114 * 3 2 1 5 5 H 1.48506 * 109.47251 * 29.99788 * 3 2 1 6 6 H 1.48504 * 109.47424 * 149.99882 * 3 2 1 7 7 C 1.38958 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99408 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 N 1.46896 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99733 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.46873 * 35.00175 * 14 13 12 16 16 C 1.52998 * 109.46870 * 274.99788 * 14 13 12 17 17 C 1.53004 * 109.46739 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47180 * 60.00333 * 17 16 14 19 19 C 1.53001 * 109.46704 * 299.99698 * 18 17 16 20 20 H 1.09006 * 109.47260 * 299.99799 * 19 18 17 21 21 N 1.46505 * 109.46980 * 180.02562 * 19 18 17 22 22 C 1.34775 * 120.00249 * 84.99997 * 21 19 18 23 23 O 1.21550 * 119.99744 * 359.97438 * 22 21 19 24 24 C 1.47829 * 119.99768 * 180.02562 * 22 21 19 25 25 C 1.39951 * 120.94298 * 359.71361 * 24 22 21 26 26 N 1.32146 * 118.92494 * 179.69642 * 25 24 22 27 27 C 1.31871 * 120.96486 * 0.62126 * 26 25 24 28 28 N 1.31871 * 122.09619 * 359.64999 * 27 26 25 29 29 C 1.32148 * 120.96933 * 0.02576 * 28 27 26 30 30 C 1.52995 * 109.47440 * 60.00375 * 19 18 17 31 31 H 0.97004 * 119.99848 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 34 34 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 35 35 H 1.00897 * 111.00226 * 56.04425 * 13 12 10 36 36 H 1.09001 * 109.46983 * 299.99700 * 16 14 13 37 37 H 1.08999 * 109.46879 * 60.00373 * 16 14 13 38 38 H 1.08999 * 109.46614 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47023 * 299.99535 * 17 16 14 40 40 H 1.08992 * 109.47242 * 59.99519 * 18 17 16 41 41 H 1.09005 * 109.46922 * 180.02562 * 18 17 16 42 42 H 0.97003 * 119.99704 * 264.99963 * 21 19 18 43 43 H 1.08002 * 120.53537 * 359.97438 * 25 24 22 44 44 H 1.08002 * 118.95544 * 179.67940 * 27 26 25 45 45 H 1.08000 * 120.53803 * 180.02562 * 29 28 27 46 46 H 1.09002 * 109.47443 * 180.02562 * 30 19 18 47 47 H 1.09006 * 109.47365 * 59.99487 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0072 11 8 3.4473 -3.4210 0.0072 12 6 5.5607 -2.3706 0.0141 13 7 6.0503 -3.7555 0.0194 14 6 7.5188 -3.7947 0.0268 15 1 7.9015 -2.9617 0.6164 16 6 8.0391 -3.6856 -1.4079 17 6 9.5685 -3.7271 -1.4002 18 6 10.0399 -5.0466 -0.7857 19 6 9.5196 -5.1556 0.6489 20 1 9.9027 -4.3228 1.2387 21 7 9.9714 -6.4188 1.2376 22 6 11.1888 -6.4980 1.8104 23 8 11.9121 -5.5215 1.8381 24 6 11.6449 -7.7728 2.4038 25 6 10.8264 -8.9079 2.3871 26 7 11.2765 -10.0285 2.9237 27 6 12.4713 -10.0826 3.4792 28 7 13.2724 -9.0360 3.5217 29 6 12.9051 -7.8771 3.0035 30 6 7.9902 -5.1142 0.6414 31 1 -0.4850 0.8401 0.0004 32 1 3.8649 -0.3633 0.0014 33 1 5.9281 -1.8591 -0.8755 34 1 5.9200 -1.8543 0.9044 35 1 5.6784 -4.2736 -0.7625 36 1 7.6564 -4.5188 -1.9974 37 1 7.7029 -2.7458 -1.8458 38 1 9.9391 -3.6498 -2.4224 39 1 9.9516 -2.8942 -0.8105 40 1 9.6568 -5.8793 -1.3754 41 1 11.1296 -5.0759 -0.7799 42 1 9.3944 -7.1982 1.2151 43 1 9.8445 -8.8698 1.9389 44 1 12.8046 -11.0140 3.9128 45 1 13.5669 -7.0245 3.0418 46 1 7.6195 -5.1914 1.6635 47 1 7.6071 -5.9470 0.0516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567162156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:04 Heat of formation + Delta-G solvation = -53.283270 kcal Electronic energy + Delta-G solvation = -29165.007070 eV Core-core repulsion = 24960.309410 eV Total energy + Delta-G solvation = -4204.697659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30090 -40.95115 -40.30719 -39.28963 -36.50253 -35.90047 -35.05690 -34.50138 -33.73318 -33.31262 -31.14487 -30.08618 -27.82059 -26.38990 -25.64404 -25.46335 -23.42165 -22.92099 -21.66088 -21.39946 -21.06460 -20.22816 -19.19042 -18.76112 -18.27611 -17.84969 -17.10519 -16.78857 -16.46875 -16.42202 -16.11790 -15.89641 -15.54813 -15.37357 -15.11543 -15.00608 -14.77569 -14.72223 -14.53977 -14.41178 -14.19695 -13.89504 -13.56623 -13.24528 -13.17434 -12.85596 -12.79702 -12.41020 -12.28044 -12.06718 -12.04386 -11.97934 -11.75237 -11.54142 -11.50639 -11.45104 -11.04585 -10.90458 -10.43530 -10.42017 -10.24049 -10.13968 -9.24559 -8.40710 -6.01430 -0.68918 -0.09869 1.31010 1.35830 1.44981 1.69893 1.90362 1.97166 2.23457 2.70212 2.74174 3.00702 3.07135 3.16108 3.31964 3.39094 3.56116 3.74879 3.76636 3.96173 4.05357 4.12139 4.20598 4.23773 4.30421 4.42127 4.46166 4.49214 4.56782 4.60819 4.61815 4.72506 4.92657 5.03969 5.13014 5.14881 5.16733 5.27958 5.34646 5.39387 5.49718 5.54159 5.71948 5.92893 6.10039 6.37146 6.44989 6.60681 6.87123 6.89085 7.03859 7.40995 7.97569 8.76857 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.001693 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.870120 B =16536.444189 C =17074.917100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.329 4.329 8 H 0.056 0.944 9 N -0.592 5.592 10 C 0.448 3.552 11 O -0.614 6.614 12 C 0.063 3.937 13 N -0.679 5.679 14 C 0.094 3.906 15 H 0.084 0.916 16 C -0.148 4.148 17 C -0.106 4.106 18 C -0.123 4.123 19 C 0.154 3.846 20 H 0.077 0.923 21 N -0.705 5.705 22 C 0.573 3.427 23 O -0.565 6.565 24 C -0.249 4.249 25 C 0.192 3.808 26 N -0.536 5.536 27 C 0.314 3.686 28 N -0.539 5.539 29 C 0.201 3.799 30 C -0.106 4.106 31 H 0.279 0.721 32 H 0.389 0.611 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.346 0.654 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.413 0.587 43 H 0.201 0.799 44 H 0.231 0.769 45 H 0.183 0.817 46 H 0.070 0.930 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.806 -13.069 1.129 32.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.155 1.155 7 C -0.458 4.458 8 H 0.074 0.926 9 N -0.234 5.234 10 C 0.236 3.764 11 O -0.498 6.498 12 C -0.070 4.070 13 N -0.310 5.310 14 C -0.016 4.016 15 H 0.102 0.898 16 C -0.187 4.187 17 C -0.145 4.145 18 C -0.161 4.161 19 C 0.049 3.951 20 H 0.095 0.905 21 N -0.356 5.356 22 C 0.359 3.641 23 O -0.445 6.445 24 C -0.256 4.256 25 C 0.024 3.976 26 N -0.249 5.249 27 C 0.028 3.972 28 N -0.252 5.252 29 C 0.035 3.965 30 C -0.144 4.144 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.166 0.834 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.251 0.749 43 H 0.218 0.782 44 H 0.247 0.753 45 H 0.200 0.800 46 H 0.089 0.911 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 29.938 -13.925 2.240 33.094 hybrid contribution -0.730 1.630 -1.198 2.151 sum 29.208 -12.295 1.043 31.708 Atomic orbital electron populations 1.69803 1.08140 1.29209 1.50343 1.26109 0.96456 1.02691 0.96104 0.85376 0.79506 0.76781 0.79930 1.18110 1.20149 1.15462 1.19013 0.81574 0.94910 1.50320 0.92632 1.42046 1.05786 1.07678 1.67841 1.21027 0.91068 0.83259 0.81005 1.90542 1.71439 1.32744 1.55076 1.21646 0.89315 0.92223 1.03798 1.60109 1.07780 1.11597 1.51508 1.21545 0.85690 0.98411 0.95926 0.89796 1.22296 0.96686 1.02552 0.97154 1.21367 0.94508 0.97158 1.01488 1.21871 1.00419 0.98865 0.94989 1.20920 0.94029 0.85904 0.94223 0.90481 1.45851 1.16740 1.15001 1.57964 1.17894 0.81841 0.86878 0.77491 1.90797 1.55453 1.38447 1.59768 1.21711 0.99548 0.96775 1.07593 1.23968 0.99265 0.85926 0.88396 1.68601 1.16748 1.27993 1.11561 1.25949 0.84800 0.97903 0.88534 1.68658 1.36641 1.00602 1.19347 1.23680 0.92367 0.95509 0.84974 1.21650 0.92278 0.98180 1.02327 0.91181 0.77509 0.90500 0.87172 0.83429 0.91260 0.91726 0.90783 0.91650 0.90662 0.92476 0.74878 0.78238 0.75270 0.80003 0.91087 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.96 21.66 0.30 -55.73 16 2 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 3 Si 0.96 38.34 27.74 68.60 1.90 40.24 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 7 C -0.33 -19.10 10.16 84.04 0.85 -18.24 16 8 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 9 N -0.59 -27.37 5.09 -306.98 -1.56 -28.93 16 10 C 0.45 19.62 7.82 87.66 0.69 20.30 16 11 O -0.61 -33.15 15.78 -3.07 -0.05 -33.20 16 12 C 0.06 1.78 5.97 85.56 0.51 2.29 16 13 N -0.68 -17.69 5.87 -495.57 -2.91 -20.60 16 14 C 0.09 1.66 2.47 44.91 0.11 1.78 16 15 H 0.08 1.44 7.80 -2.39 -0.02 1.42 16 16 C -0.15 -2.17 5.17 30.59 0.16 -2.02 16 17 C -0.11 -1.35 5.92 30.60 0.18 -1.17 16 18 C -0.12 -1.59 5.49 30.59 0.17 -1.42 16 19 C 0.15 2.12 2.45 44.99 0.11 2.23 16 20 H 0.08 1.36 7.58 -2.38 -0.02 1.34 16 21 N -0.70 -8.04 5.04 -445.42 -2.24 -10.29 16 22 C 0.57 9.10 7.75 86.78 0.67 9.77 16 23 O -0.56 -13.11 16.11 -3.87 -0.06 -13.17 16 24 C -0.25 -3.26 5.91 -19.91 -0.12 -3.38 16 25 C 0.19 1.91 10.81 85.06 0.92 2.83 16 26 N -0.54 -6.62 10.42 -198.97 -2.07 -8.69 16 27 C 0.31 3.52 12.27 180.84 2.22 5.74 16 28 N -0.54 -7.81 10.42 -198.97 -2.07 -9.88 16 29 C 0.20 2.92 10.88 85.06 0.93 3.85 16 30 C -0.11 -1.56 5.00 30.59 0.15 -1.41 16 31 H 0.28 15.28 8.31 -92.71 -0.77 14.50 16 32 H 0.39 14.85 5.76 -92.71 -0.53 14.32 16 33 H 0.08 1.77 7.43 -2.39 -0.02 1.75 16 34 H 0.11 2.71 8.06 -2.39 -0.02 2.69 16 35 H 0.35 9.68 8.17 -89.70 -0.73 8.95 16 36 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 37 H 0.06 0.99 7.45 -2.39 -0.02 0.98 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.41 2.38 6.74 -92.71 -0.62 1.76 16 43 H 0.20 0.60 6.54 -2.91 -0.02 0.59 16 44 H 0.23 0.93 8.06 -2.91 -0.02 0.90 16 45 H 0.18 2.45 7.74 -2.91 -0.02 2.42 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -82.01 388.74 -1.66 -83.67 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.91 Total: 35.79 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 8.02 Total: 20.79 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -10.56 Total: -134.12 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -0.11 Total: -46.37 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.24 kcal Total: -82.01 -1.66 -83.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567162156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.387 kcal (2) G-P(sol) polarization free energy of solvation -82.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds