Wall clock time and date at job start Wed Apr 1 2020 05:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 119.99996 * 2 1 4 4 H 1.48497 * 109.47058 * 269.99984 * 3 2 1 5 5 H 1.48498 * 109.47329 * 30.00057 * 3 2 1 6 6 H 1.48501 * 109.47210 * 150.00224 * 3 2 1 7 7 C 1.38954 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99903 * 359.97438 * 7 2 1 9 9 N 1.37094 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00343 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99796 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00077 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47004 * 180.02562 * 12 10 9 14 14 C 1.46898 * 111.00188 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47032 * 324.99703 * 14 13 12 16 16 C 1.53005 * 109.47342 * 84.99554 * 14 13 12 17 17 C 1.52997 * 109.47452 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46817 * 300.00239 * 17 16 14 19 19 C 1.53000 * 109.47233 * 60.00194 * 18 17 16 20 20 H 1.09002 * 109.47398 * 59.99826 * 19 18 17 21 21 N 1.46500 * 109.47023 * 179.97438 * 19 18 17 22 22 C 1.34779 * 119.99793 * 274.99565 * 21 19 18 23 23 O 1.21549 * 120.00209 * 0.02562 * 22 21 19 24 24 C 1.47832 * 119.99841 * 180.02562 * 22 21 19 25 25 C 1.39950 * 120.93877 * 359.72293 * 24 22 21 26 26 N 1.32148 * 118.92487 * 179.71845 * 25 24 22 27 27 C 1.31872 * 120.96419 * 0.56575 * 26 25 24 28 28 N 1.31866 * 122.09527 * 359.70781 * 27 26 25 29 29 C 1.32151 * 120.96776 * 359.97438 * 28 27 26 30 30 C 1.52997 * 109.47060 * 299.99657 * 19 18 17 31 31 H 0.97003 * 120.00089 * 359.97438 * 1 2 3 32 32 H 0.97011 * 119.99698 * 0.02562 * 9 7 2 33 33 H 1.08997 * 109.47702 * 59.99857 * 12 10 9 34 34 H 1.09006 * 109.46883 * 299.99677 * 12 10 9 35 35 H 1.00905 * 110.99629 * 303.94787 * 13 12 10 36 36 H 1.09002 * 109.46935 * 60.00090 * 16 14 13 37 37 H 1.09001 * 109.46812 * 300.00432 * 16 14 13 38 38 H 1.08993 * 109.47194 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46695 * 59.99734 * 17 16 14 40 40 H 1.08992 * 109.47063 * 299.99823 * 18 17 16 41 41 H 1.09004 * 109.46733 * 179.97438 * 18 17 16 42 42 H 0.97004 * 120.00223 * 94.99655 * 21 19 18 43 43 H 1.08001 * 120.53580 * 359.97438 * 25 24 22 44 44 H 1.07996 * 118.95359 * 179.67797 * 27 26 25 45 45 H 1.08000 * 120.53841 * 179.97438 * 29 28 27 46 46 H 1.08996 * 109.47853 * 180.02562 * 30 19 18 47 47 H 1.09002 * 109.47153 * 300.00319 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0000 13 7 6.0504 -3.7556 -0.0006 14 6 7.5188 -3.7948 -0.0012 15 1 7.9042 -2.9629 -0.5907 16 6 8.0327 -3.6831 1.4356 17 6 9.5621 -3.7233 1.4349 18 6 10.0372 -5.0434 0.8245 19 6 9.5235 -5.1551 -0.6123 20 1 9.9086 -4.3229 -1.2016 21 7 9.9789 -6.4188 -1.1969 22 6 11.1990 -6.4978 -1.7642 23 8 11.9216 -5.5208 -1.7902 24 6 11.6584 -7.7729 -2.3546 25 6 10.8449 -8.9114 -2.3303 26 7 11.2932 -10.0290 -2.8748 27 6 12.4907 -10.0831 -3.4245 28 7 13.2914 -9.0362 -3.4641 29 6 12.9211 -7.8770 -2.9488 30 6 7.9940 -5.1148 -0.6116 31 1 -0.4850 0.8401 0.0004 32 1 3.8648 -0.3633 -0.0004 33 1 5.9241 -1.8568 0.8899 34 1 5.9240 -1.8568 -0.8901 35 1 5.6749 -4.2722 0.7806 36 1 7.6472 -4.5151 2.0250 37 1 7.6944 -2.7424 1.8703 38 1 9.9281 -3.6433 2.4584 39 1 9.9471 -2.8911 0.8455 40 1 9.6522 -5.8755 1.4138 41 1 11.1269 -5.0719 0.8236 42 1 9.4024 -7.1986 -1.1758 43 1 9.8650 -8.8762 -1.8776 44 1 12.8264 -11.0147 -3.8555 45 1 13.5827 -7.0241 -2.9847 46 1 7.6279 -5.1948 -1.6351 47 1 7.6089 -5.9470 -0.0223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567162157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:06 Heat of formation + Delta-G solvation = -53.295644 kcal Electronic energy + Delta-G solvation = -29164.781030 eV Core-core repulsion = 24960.082834 eV Total energy + Delta-G solvation = -4204.698196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30116 -40.95114 -40.30773 -39.28971 -36.50251 -35.90072 -35.05659 -34.50129 -33.73263 -33.31330 -31.14537 -30.08659 -27.82127 -26.38967 -25.64428 -25.46387 -23.42217 -22.92108 -21.66111 -21.39918 -21.06501 -20.22838 -19.19046 -18.76072 -18.27614 -17.85057 -17.10320 -16.78966 -16.47305 -16.42485 -16.11648 -15.88867 -15.55050 -15.37043 -15.12125 -15.00630 -14.78038 -14.72282 -14.54006 -14.40678 -14.19053 -13.89617 -13.56867 -13.24778 -13.17818 -12.85808 -12.79700 -12.40512 -12.28064 -12.06574 -12.04350 -11.97734 -11.75364 -11.54012 -11.50994 -11.45138 -11.04476 -10.90566 -10.43548 -10.42198 -10.23881 -10.13953 -9.24741 -8.40698 -6.01440 -0.68872 -0.09859 1.30645 1.36286 1.44886 1.69896 1.90341 1.97100 2.23493 2.70280 2.74338 3.00715 3.07167 3.15856 3.32002 3.39186 3.56145 3.74814 3.76610 3.96167 4.05314 4.12121 4.20542 4.23728 4.30447 4.42042 4.46158 4.49166 4.56844 4.60846 4.61793 4.72447 4.92570 5.03943 5.12981 5.14872 5.16754 5.27908 5.34637 5.39351 5.49701 5.54158 5.71967 5.92901 6.10003 6.37144 6.44772 6.60649 6.87139 6.89082 7.03869 7.40978 7.97547 8.76869 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.001692 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.348100 B =16540.163917 C =17077.276222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.329 4.329 8 H 0.056 0.944 9 N -0.592 5.592 10 C 0.448 3.552 11 O -0.614 6.614 12 C 0.062 3.938 13 N -0.678 5.678 14 C 0.094 3.906 15 H 0.084 0.916 16 C -0.148 4.148 17 C -0.106 4.106 18 C -0.123 4.123 19 C 0.154 3.846 20 H 0.077 0.923 21 N -0.705 5.705 22 C 0.573 3.427 23 O -0.565 6.565 24 C -0.249 4.249 25 C 0.192 3.808 26 N -0.536 5.536 27 C 0.314 3.686 28 N -0.539 5.539 29 C 0.201 3.799 30 C -0.106 4.106 31 H 0.279 0.721 32 H 0.389 0.611 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.346 0.654 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.413 0.587 43 H 0.201 0.799 44 H 0.231 0.769 45 H 0.183 0.817 46 H 0.070 0.930 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.836 -13.078 -0.938 32.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.458 4.458 8 H 0.074 0.926 9 N -0.234 5.234 10 C 0.236 3.764 11 O -0.498 6.498 12 C -0.070 4.070 13 N -0.310 5.310 14 C -0.016 4.016 15 H 0.102 0.898 16 C -0.187 4.187 17 C -0.145 4.145 18 C -0.161 4.161 19 C 0.049 3.951 20 H 0.095 0.905 21 N -0.356 5.356 22 C 0.359 3.641 23 O -0.445 6.445 24 C -0.256 4.256 25 C 0.024 3.976 26 N -0.249 5.249 27 C 0.028 3.972 28 N -0.252 5.252 29 C 0.035 3.965 30 C -0.144 4.144 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.166 0.834 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.251 0.749 43 H 0.218 0.782 44 H 0.247 0.753 45 H 0.200 0.800 46 H 0.089 0.911 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 29.971 -13.933 -2.054 33.115 hybrid contribution -0.738 1.633 1.195 2.153 sum 29.233 -12.300 -0.859 31.727 Atomic orbital electron populations 1.69805 1.08137 1.29209 1.50350 1.26108 0.96458 1.02691 0.96107 0.85373 0.79523 0.76786 0.79895 1.18281 1.20089 1.15365 1.19013 0.81573 0.94910 1.50314 0.92631 1.42047 1.05786 1.07677 1.67848 1.21023 0.91064 0.83256 0.81007 1.90541 1.71433 1.32749 1.55076 1.21649 0.89323 0.92214 1.03806 1.60116 1.07648 1.11662 1.51543 1.21541 0.85714 0.98416 0.95900 0.89782 1.22297 0.96710 1.02530 0.97153 1.21364 0.94487 0.97161 1.01507 1.21871 1.00435 0.98852 0.94982 1.20917 0.94003 0.85891 0.94259 0.90474 1.45850 1.16529 1.14940 1.58236 1.17895 0.81858 0.86893 0.77456 1.90797 1.55602 1.38427 1.59633 1.21709 0.99528 0.96720 1.07667 1.23969 0.99245 0.85949 0.88393 1.68603 1.16657 1.28129 1.11518 1.25947 0.84784 0.97887 0.88569 1.68659 1.36813 1.00585 1.19191 1.23677 0.92328 0.95538 0.84988 1.21646 0.92271 0.98170 1.02347 0.91182 0.77509 0.90579 0.87081 0.83448 0.91262 0.91766 0.90786 0.91652 0.90661 0.92470 0.74877 0.78237 0.75273 0.80004 0.91081 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.96 21.66 0.30 -55.73 16 2 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 3 Si 0.96 38.34 27.74 68.60 1.90 40.25 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.23 -7.63 6.52 99.48 0.65 -6.98 16 7 C -0.33 -19.09 10.16 84.04 0.85 -18.24 16 8 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 9 N -0.59 -27.37 5.09 -306.99 -1.56 -28.94 16 10 C 0.45 19.62 7.82 87.66 0.69 20.31 16 11 O -0.61 -33.15 15.78 -3.06 -0.05 -33.20 16 12 C 0.06 1.78 5.97 85.56 0.51 2.29 16 13 N -0.68 -17.69 5.87 -495.57 -2.91 -20.60 16 14 C 0.09 1.66 2.47 44.92 0.11 1.78 16 15 H 0.08 1.44 7.80 -2.39 -0.02 1.42 16 16 C -0.15 -2.18 5.17 30.60 0.16 -2.02 16 17 C -0.11 -1.36 5.92 30.59 0.18 -1.17 16 18 C -0.12 -1.58 5.49 30.60 0.17 -1.42 16 19 C 0.15 2.12 2.45 44.99 0.11 2.23 16 20 H 0.08 1.36 7.58 -2.39 -0.02 1.34 16 21 N -0.70 -8.03 5.04 -445.42 -2.24 -10.27 16 22 C 0.57 9.09 7.75 86.78 0.67 9.76 16 23 O -0.56 -13.09 16.11 -3.87 -0.06 -13.16 16 24 C -0.25 -3.26 5.91 -19.91 -0.12 -3.37 16 25 C 0.19 1.91 10.81 85.06 0.92 2.83 16 26 N -0.54 -6.61 10.42 -198.98 -2.07 -8.69 16 27 C 0.31 3.52 12.27 180.84 2.22 5.74 16 28 N -0.54 -7.81 10.42 -198.99 -2.07 -9.88 16 29 C 0.20 2.92 10.88 85.06 0.93 3.85 16 30 C -0.11 -1.56 5.00 30.59 0.15 -1.41 16 31 H 0.28 15.28 8.31 -92.71 -0.77 14.50 16 32 H 0.39 14.85 5.76 -92.70 -0.53 14.32 16 33 H 0.08 1.76 7.44 -2.39 -0.02 1.74 16 34 H 0.11 2.71 8.05 -2.38 -0.02 2.69 16 35 H 0.35 9.69 8.17 -89.69 -0.73 8.96 16 36 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 37 H 0.06 1.00 7.45 -2.39 -0.02 0.98 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.41 2.38 6.74 -92.71 -0.62 1.75 16 43 H 0.20 0.60 6.54 -2.91 -0.02 0.58 16 44 H 0.23 0.93 8.06 -2.91 -0.02 0.90 16 45 H 0.18 2.44 7.74 -2.91 -0.02 2.42 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -82.01 388.74 -1.67 -83.68 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.91 Total: 35.77 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 8.02 Total: 20.77 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -10.56 Total: -134.11 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -0.11 Total: -46.36 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.25 kcal Total: -82.01 -1.67 -83.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567162157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.379 kcal (2) G-P(sol) polarization free energy of solvation -82.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds