Wall clock time and date at job start Wed Apr 1 2020 05:00:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31409 * 1
3 3 Si 1.86803 * 120.00123 * 2 1
4 4 H 1.48497 * 109.47064 * 270.00133 * 3 2 1
5 5 H 1.48501 * 109.47142 * 30.00594 * 3 2 1
6 6 H 1.48507 * 109.46923 * 150.00433 * 3 2 1
7 7 C 1.38952 * 119.99936 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00266 * 179.97438 * 7 2 1
9 9 N 1.37101 * 119.99827 * 359.97438 * 7 2 1
10 10 C 1.34780 * 119.99842 * 180.02562 * 9 7 2
11 11 O 1.21294 * 120.00047 * 359.97438 * 10 9 7
12 12 C 1.50702 * 119.99798 * 180.02562 * 10 9 7
13 13 N 1.46894 * 109.47094 * 179.97438 * 12 10 9
14 14 C 1.46895 * 111.00165 * 179.97438 * 13 12 10
15 15 H 1.09003 * 109.47141 * 324.99348 * 14 13 12
16 16 C 1.52995 * 109.47468 * 85.00058 * 14 13 12
17 17 C 1.52996 * 109.47338 * 180.02562 * 16 14 13
18 18 C 1.52998 * 109.47203 * 299.99576 * 17 16 14
19 19 C 1.53002 * 109.47083 * 59.99917 * 18 17 16
20 20 H 1.08993 * 109.47231 * 179.97438 * 19 18 17
21 21 N 1.46504 * 109.46550 * 60.00003 * 19 18 17
22 22 C 1.34777 * 120.00215 * 85.00471 * 21 19 18
23 23 O 1.21561 * 119.99501 * 359.97438 * 22 21 19
24 24 C 1.47820 * 120.00399 * 179.97438 * 22 21 19
25 25 C 1.39948 * 120.94208 * 179.97438 * 24 22 21
26 26 N 1.32147 * 118.92391 * 179.72965 * 25 24 22
27 27 C 1.31864 * 120.96882 * 0.25468 * 26 25 24
28 28 N 1.31867 * 122.09575 * 0.02562 * 27 26 25
29 29 C 1.32147 * 120.96831 * 359.97438 * 28 27 26
30 30 C 1.53002 * 109.47187 * 300.00425 * 19 18 17
31 31 H 0.96998 * 119.99671 * 359.97438 * 1 2 3
32 32 H 0.96996 * 119.99794 * 359.97438 * 9 7 2
33 33 H 1.08995 * 109.47156 * 59.99986 * 12 10 9
34 34 H 1.08997 * 109.46630 * 299.99784 * 12 10 9
35 35 H 1.00901 * 110.99913 * 56.04030 * 13 12 10
36 36 H 1.09007 * 109.46910 * 300.00408 * 16 14 13
37 37 H 1.09003 * 109.46996 * 59.99575 * 16 14 13
38 38 H 1.08994 * 109.47340 * 59.99858 * 17 16 14
39 39 H 1.09006 * 109.47017 * 179.97438 * 17 16 14
40 40 H 1.09003 * 109.46994 * 300.00524 * 18 17 16
41 41 H 1.08998 * 109.47371 * 179.97438 * 18 17 16
42 42 H 0.96998 * 119.99756 * 264.99577 * 21 19 18
43 43 H 1.08002 * 120.53917 * 0.02562 * 25 24 22
44 44 H 1.08002 * 118.95355 * 180.02562 * 27 26 25
45 45 H 1.08002 * 120.53954 * 180.02562 * 29 28 27
46 46 H 1.08996 * 109.46990 * 179.97438 * 30 19 18
47 47 H 1.08999 * 109.46652 * 299.99329 * 30 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 2.4956 2.0464 -1.4001
5 1 1.4457 2.6527 0.7002
6 1 3.5458 1.4401 0.7000
7 6 2.0088 -1.2034 -0.0005
8 1 3.0888 -1.2034 -0.0010
9 7 1.3233 -2.3907 -0.0005
10 6 1.9972 -3.5579 -0.0005
11 8 3.2101 -3.5579 -0.0010
12 6 1.2436 -4.8630 -0.0011
13 7 2.1981 -5.9795 -0.0016
14 6 1.4978 -7.2708 -0.0016
15 1 0.5848 -7.1890 0.5883
16 6 1.1437 -7.6590 -1.4385
17 6 0.4137 -9.0037 -1.4383
18 6 1.3195 -10.0756 -0.8291
19 6 1.6738 -9.6875 0.6079
20 1 2.3187 -10.4514 1.0421
21 7 0.4466 -9.5769 1.4004
22 6 -0.0912 -10.6753 1.9668
23 8 0.4419 -11.7579 1.8196
24 6 -1.3291 -10.5637 2.7669
25 6 -1.9046 -11.6914 3.3632
26 7 -3.0086 -11.5451 4.0745
27 6 -3.5691 -10.3605 4.2215
28 7 -3.0636 -9.2733 3.6726
29 6 -1.9618 -9.3281 2.9451
30 6 2.4037 -8.3428 0.6078
31 1 -0.4849 0.8401 0.0004
32 1 0.3533 -2.3906 0.0002
33 1 0.6173 -4.9205 -0.8913
34 1 0.6167 -4.9208 0.8886
35 1 2.8330 -5.9128 0.7797
36 1 0.4980 -6.8955 -1.8725
37 1 2.0567 -7.7408 -2.0283
38 1 -0.4993 -8.9214 -0.8487
39 1 0.1610 -9.2800 -2.4621
40 1 2.2326 -10.1578 -1.4187
41 1 0.7994 -11.0335 -0.8285
42 1 0.0211 -8.7131 1.5176
43 1 -1.4511 -12.6648 3.2480
44 1 -4.4708 -10.2781 4.8101
45 1 -1.5535 -8.4332 2.4990
46 1 2.6556 -8.0661 1.6315
47 1 3.3167 -8.4251 0.0181
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001567162158.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:00:11
Heat of formation + Delta-G solvation = -28.638463 kcal
Electronic energy + Delta-G solvation = -29879.543282 eV
Core-core repulsion = 25675.914301 eV
Total energy + Delta-G solvation = -4203.628980 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.73503 -40.40990 -38.77171 -37.99961 -35.27231 -34.44193 -33.93963 -33.55741
-32.60603 -31.27679 -30.37043 -29.38362 -26.24731 -25.80009 -25.06807 -24.06911
-22.84569 -22.00418 -21.54426 -19.51950 -19.24708 -18.70217 -18.08004 -17.93313
-17.70685 -16.51833 -15.89314 -15.85548 -15.38422 -15.32981 -15.17783 -14.90131
-14.55205 -14.46542 -14.19245 -14.08484 -14.03066 -13.84709 -13.48052 -12.90268
-12.48666 -12.46194 -12.32984 -12.15024 -12.12256 -11.86039 -11.54991 -11.45349
-11.38752 -11.07654 -10.86815 -10.64969 -10.42064 -10.38771 -10.36037 -10.29273
-10.23684 -9.84906 -9.54118 -9.45907 -8.50290 -8.14761 -7.99603 -6.44938
-3.85829 -0.11526 0.47392 2.36484 2.59332 3.15658 3.24592 3.28825
3.30167 3.48998 3.59704 3.85941 3.86911 3.95934 4.13664 4.20641
4.34599 4.44490 4.51854 4.76637 4.78709 4.87425 4.95642 5.09806
5.13543 5.15394 5.21833 5.26750 5.34187 5.42924 5.56228 5.68231
5.69953 5.74309 5.80857 5.85801 5.94636 6.01168 6.07117 6.12333
6.20362 6.28213 6.32495 6.96370 7.15982 7.43189 7.52275 7.58484
7.66943 8.02934 8.57587 9.14686 9.50667 10.01869 10.72750
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.012433 B = 0.002188 C = 0.001937
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2251.466711 B =12795.862772 C =14448.243675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.022 3.978
3 Si 0.930 3.070
4 H -0.278 1.278
5 H -0.284 1.284
6 H -0.270 1.270
7 C -0.300 4.300
8 H 0.103 0.897
9 N -0.563 5.563
10 C 0.440 3.560
11 O -0.583 6.583
12 C 0.051 3.949
13 N -0.663 5.663
14 C 0.089 3.911
15 H 0.034 0.966
16 C -0.110 4.110
17 C -0.117 4.117
18 C -0.130 4.130
19 C 0.151 3.849
20 H 0.094 0.906
21 N -0.714 5.714
22 C 0.570 3.430
23 O -0.529 6.529
24 C -0.243 4.243
25 C 0.209 3.791
26 N -0.522 5.522
27 C 0.315 3.685
28 N -0.518 5.518
29 C 0.185 3.815
30 C -0.131 4.131
31 H 0.272 0.728
32 H 0.392 0.608
33 H 0.086 0.914
34 H 0.042 0.958
35 H 0.350 0.650
36 H 0.064 0.936
37 H 0.074 0.926
38 H 0.057 0.943
39 H 0.065 0.935
40 H 0.077 0.923
41 H 0.067 0.933
42 H 0.399 0.601
43 H 0.182 0.818
44 H 0.204 0.796
45 H 0.170 0.830
46 H 0.071 0.929
47 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.366 -22.539 3.967 23.755
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.179 4.179
3 Si 0.757 3.243
4 H -0.204 1.204
5 H -0.209 1.209
6 H -0.194 1.194
7 C -0.429 4.429
8 H 0.121 0.879
9 N -0.200 5.200
10 C 0.225 3.775
11 O -0.467 6.467
12 C -0.082 4.082
13 N -0.296 5.296
14 C -0.021 4.021
15 H 0.052 0.948
16 C -0.149 4.149
17 C -0.156 4.156
18 C -0.169 4.169
19 C 0.047 3.953
20 H 0.112 0.888
21 N -0.367 5.367
22 C 0.356 3.644
23 O -0.407 6.407
24 C -0.251 4.251
25 C 0.042 3.958
26 N -0.235 5.235
27 C 0.029 3.971
28 N -0.231 5.231
29 C 0.018 3.982
30 C -0.169 4.169
31 H 0.082 0.918
32 H 0.225 0.775
33 H 0.104 0.896
34 H 0.060 0.940
35 H 0.170 0.830
36 H 0.083 0.917
37 H 0.092 0.908
38 H 0.075 0.925
39 H 0.083 0.917
40 H 0.096 0.904
41 H 0.086 0.914
42 H 0.235 0.765
43 H 0.199 0.801
44 H 0.220 0.780
45 H 0.187 0.813
46 H 0.089 0.911
47 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -6.032 -23.031 3.738 24.099
hybrid contribution -0.160 1.369 0.448 1.449
sum -6.192 -21.662 4.186 22.915
Atomic orbital electron populations
1.69608 1.05943 1.28199 1.50535 1.25265 0.95638 0.99743 0.97279
0.85860 0.79229 0.80786 0.78437 1.20362 1.20920 1.19415 1.19700
0.93369 0.82221 1.47637 0.87920 1.41869 1.09190 1.04631 1.64299
1.19801 0.88394 0.84707 0.84589 1.90527 1.13747 1.87046 1.55419
1.21723 0.94358 0.91044 1.01056 1.60087 1.18677 0.99455 1.51352
1.21507 0.94920 0.89359 0.96322 0.94797 1.21588 1.01072 0.95912
0.96280 1.21515 0.98310 0.94898 1.00843 1.21937 1.00912 0.98999
0.95040 1.21027 0.84890 0.98153 0.91255 0.88795 1.46097 1.28095
1.10154 1.52350 1.17752 0.83262 0.84572 0.78858 1.90805 1.62006
1.26837 1.61018 1.21844 1.00196 0.97414 1.05643 1.23541 0.88083
0.98926 0.85274 1.68601 1.10504 1.27424 1.16988 1.25348 0.97448
0.82787 0.91533 1.68512 1.11828 1.33033 1.09754 1.23512 0.88910
0.96485 0.89316 1.22045 0.99706 0.93149 1.02002 0.91844 0.77483
0.89623 0.93988 0.82961 0.91703 0.90756 0.92454 0.91658 0.90440
0.91444 0.76457 0.80106 0.78003 0.81263 0.91078 0.88760
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16
2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
3 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16
4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16
8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16
9 N -0.56 -13.93 5.29 -10.96 -0.06 -13.98 16
10 C 0.44 10.01 7.82 -10.98 -0.09 9.92 16
11 O -0.58 -15.42 15.78 5.54 0.09 -15.34 16
12 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16
13 N -0.66 -9.50 5.93 -108.00 -0.64 -10.14 16
14 C 0.09 0.89 2.32 -67.72 -0.16 0.74 16
15 H 0.03 0.30 6.16 -51.93 -0.32 -0.02 16
16 C -0.11 -1.09 5.42 -26.74 -0.15 -1.23 16
17 C -0.12 -0.95 5.76 -26.73 -0.15 -1.10 16
18 C -0.13 -1.03 5.60 -26.73 -0.15 -1.18 16
19 C 0.15 1.20 2.78 -67.93 -0.19 1.01 16
20 H 0.09 0.82 7.57 -51.93 -0.39 0.43 16
21 N -0.71 -5.29 4.19 -54.75 -0.23 -5.52 16
22 C 0.57 5.13 7.75 -12.34 -0.10 5.04 16
23 O -0.53 -6.31 16.11 5.31 0.09 -6.22 16
24 C -0.24 -1.94 5.91 -104.70 -0.62 -2.56 16
25 C 0.21 1.70 10.88 -16.78 -0.18 1.52 16
26 N -0.52 -4.39 10.42 -14.25 -0.15 -4.54 16
27 C 0.32 2.33 12.27 -92.03 -1.13 1.20 16
28 N -0.52 -4.37 10.42 -14.24 -0.15 -4.52 16
29 C 0.19 1.36 10.81 -16.77 -0.18 1.18 16
30 C -0.13 -1.10 4.88 -26.73 -0.13 -1.23 16
31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16
32 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16
33 H 0.09 1.30 7.43 -51.93 -0.39 0.92 16
34 H 0.04 0.60 8.05 -51.93 -0.42 0.19 16
35 H 0.35 5.23 8.05 -39.29 -0.32 4.91 16
36 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16
37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.06 0.45 7.60 -51.93 -0.39 0.05 16
39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
42 H 0.40 2.40 5.00 -40.82 -0.20 2.20 16
43 H 0.18 1.27 7.75 -52.49 -0.41 0.86 16
44 H 0.20 0.83 8.06 -52.49 -0.42 0.40 16
45 H 0.17 0.84 6.54 -52.49 -0.34 0.50 16
46 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16
47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
LS Contribution 387.29 15.07 5.84 5.84
Total: -1.00 -33.51 387.29 -9.36 -42.87
By element:
Atomic # 1 Polarization: 19.38 SS G_CDS: -6.36 Total: 13.02 kcal
Atomic # 6 Polarization: 9.71 SS G_CDS: -3.49 Total: 6.22 kcal
Atomic # 7 Polarization: -61.66 SS G_CDS: -0.50 Total: -62.16 kcal
Atomic # 8 Polarization: -21.73 SS G_CDS: 0.17 Total: -21.56 kcal
Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -33.51 -9.36 -42.87 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567162158.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.231 kcal
(2) G-P(sol) polarization free energy of solvation -33.505 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.274 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.638 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds