Wall clock time and date at job start Wed Apr 1 2020 05:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.47064 * 270.00133 * 3 2 1 5 5 H 1.48501 * 109.47142 * 30.00594 * 3 2 1 6 6 H 1.48507 * 109.46923 * 150.00433 * 3 2 1 7 7 C 1.38952 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00266 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99842 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00047 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99798 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47094 * 179.97438 * 12 10 9 14 14 C 1.46895 * 111.00165 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47141 * 324.99348 * 14 13 12 16 16 C 1.52995 * 109.47468 * 85.00058 * 14 13 12 17 17 C 1.52996 * 109.47338 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47203 * 299.99576 * 17 16 14 19 19 C 1.53002 * 109.47083 * 59.99917 * 18 17 16 20 20 H 1.08993 * 109.47231 * 179.97438 * 19 18 17 21 21 N 1.46504 * 109.46550 * 60.00003 * 19 18 17 22 22 C 1.34777 * 120.00215 * 85.00471 * 21 19 18 23 23 O 1.21561 * 119.99501 * 359.97438 * 22 21 19 24 24 C 1.47820 * 120.00399 * 179.97438 * 22 21 19 25 25 C 1.39948 * 120.94208 * 179.97438 * 24 22 21 26 26 N 1.32147 * 118.92391 * 179.72965 * 25 24 22 27 27 C 1.31864 * 120.96882 * 0.25468 * 26 25 24 28 28 N 1.31867 * 122.09575 * 0.02562 * 27 26 25 29 29 C 1.32147 * 120.96831 * 359.97438 * 28 27 26 30 30 C 1.53002 * 109.47187 * 300.00425 * 19 18 17 31 31 H 0.96998 * 119.99671 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99794 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.47156 * 59.99986 * 12 10 9 34 34 H 1.08997 * 109.46630 * 299.99784 * 12 10 9 35 35 H 1.00901 * 110.99913 * 56.04030 * 13 12 10 36 36 H 1.09007 * 109.46910 * 300.00408 * 16 14 13 37 37 H 1.09003 * 109.46996 * 59.99575 * 16 14 13 38 38 H 1.08994 * 109.47340 * 59.99858 * 17 16 14 39 39 H 1.09006 * 109.47017 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.46994 * 300.00524 * 18 17 16 41 41 H 1.08998 * 109.47371 * 179.97438 * 18 17 16 42 42 H 0.96998 * 119.99756 * 264.99577 * 21 19 18 43 43 H 1.08002 * 120.53917 * 0.02562 * 25 24 22 44 44 H 1.08002 * 118.95355 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.53954 * 180.02562 * 29 28 27 46 46 H 1.08996 * 109.46990 * 179.97438 * 30 19 18 47 47 H 1.08999 * 109.46652 * 299.99329 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6527 0.7002 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 7 2.1981 -5.9795 -0.0016 14 6 1.4978 -7.2708 -0.0016 15 1 0.5848 -7.1890 0.5883 16 6 1.1437 -7.6590 -1.4385 17 6 0.4137 -9.0037 -1.4383 18 6 1.3195 -10.0756 -0.8291 19 6 1.6738 -9.6875 0.6079 20 1 2.3187 -10.4514 1.0421 21 7 0.4466 -9.5769 1.4004 22 6 -0.0912 -10.6753 1.9668 23 8 0.4419 -11.7579 1.8196 24 6 -1.3291 -10.5637 2.7669 25 6 -1.9046 -11.6914 3.3632 26 7 -3.0086 -11.5451 4.0745 27 6 -3.5691 -10.3605 4.2215 28 7 -3.0636 -9.2733 3.6726 29 6 -1.9618 -9.3281 2.9451 30 6 2.4037 -8.3428 0.6078 31 1 -0.4849 0.8401 0.0004 32 1 0.3533 -2.3906 0.0002 33 1 0.6173 -4.9205 -0.8913 34 1 0.6167 -4.9208 0.8886 35 1 2.8330 -5.9128 0.7797 36 1 0.4980 -6.8955 -1.8725 37 1 2.0567 -7.7408 -2.0283 38 1 -0.4993 -8.9214 -0.8487 39 1 0.1610 -9.2800 -2.4621 40 1 2.2326 -10.1578 -1.4187 41 1 0.7994 -11.0335 -0.8285 42 1 0.0211 -8.7131 1.5176 43 1 -1.4511 -12.6648 3.2480 44 1 -4.4708 -10.2781 4.8101 45 1 -1.5535 -8.4332 2.4990 46 1 2.6556 -8.0661 1.6315 47 1 3.3167 -8.4251 0.0181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567162158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:11 Heat of formation + Delta-G solvation = -28.638463 kcal Electronic energy + Delta-G solvation = -29879.543282 eV Core-core repulsion = 25675.914301 eV Total energy + Delta-G solvation = -4203.628980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73503 -40.40990 -38.77171 -37.99961 -35.27231 -34.44193 -33.93963 -33.55741 -32.60603 -31.27679 -30.37043 -29.38362 -26.24731 -25.80009 -25.06807 -24.06911 -22.84569 -22.00418 -21.54426 -19.51950 -19.24708 -18.70217 -18.08004 -17.93313 -17.70685 -16.51833 -15.89314 -15.85548 -15.38422 -15.32981 -15.17783 -14.90131 -14.55205 -14.46542 -14.19245 -14.08484 -14.03066 -13.84709 -13.48052 -12.90268 -12.48666 -12.46194 -12.32984 -12.15024 -12.12256 -11.86039 -11.54991 -11.45349 -11.38752 -11.07654 -10.86815 -10.64969 -10.42064 -10.38771 -10.36037 -10.29273 -10.23684 -9.84906 -9.54118 -9.45907 -8.50290 -8.14761 -7.99603 -6.44938 -3.85829 -0.11526 0.47392 2.36484 2.59332 3.15658 3.24592 3.28825 3.30167 3.48998 3.59704 3.85941 3.86911 3.95934 4.13664 4.20641 4.34599 4.44490 4.51854 4.76637 4.78709 4.87425 4.95642 5.09806 5.13543 5.15394 5.21833 5.26750 5.34187 5.42924 5.56228 5.68231 5.69953 5.74309 5.80857 5.85801 5.94636 6.01168 6.07117 6.12333 6.20362 6.28213 6.32495 6.96370 7.15982 7.43189 7.52275 7.58484 7.66943 8.02934 8.57587 9.14686 9.50667 10.01869 10.72750 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.002188 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.466711 B =12795.862772 C =14448.243675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.663 5.663 14 C 0.089 3.911 15 H 0.034 0.966 16 C -0.110 4.110 17 C -0.117 4.117 18 C -0.130 4.130 19 C 0.151 3.849 20 H 0.094 0.906 21 N -0.714 5.714 22 C 0.570 3.430 23 O -0.529 6.529 24 C -0.243 4.243 25 C 0.209 3.791 26 N -0.522 5.522 27 C 0.315 3.685 28 N -0.518 5.518 29 C 0.185 3.815 30 C -0.131 4.131 31 H 0.272 0.728 32 H 0.392 0.608 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.350 0.650 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.399 0.601 43 H 0.182 0.818 44 H 0.204 0.796 45 H 0.170 0.830 46 H 0.071 0.929 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 -22.539 3.967 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.296 5.296 14 C -0.021 4.021 15 H 0.052 0.948 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.169 4.169 19 C 0.047 3.953 20 H 0.112 0.888 21 N -0.367 5.367 22 C 0.356 3.644 23 O -0.407 6.407 24 C -0.251 4.251 25 C 0.042 3.958 26 N -0.235 5.235 27 C 0.029 3.971 28 N -0.231 5.231 29 C 0.018 3.982 30 C -0.169 4.169 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.170 0.830 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.235 0.765 43 H 0.199 0.801 44 H 0.220 0.780 45 H 0.187 0.813 46 H 0.089 0.911 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.032 -23.031 3.738 24.099 hybrid contribution -0.160 1.369 0.448 1.449 sum -6.192 -21.662 4.186 22.915 Atomic orbital electron populations 1.69608 1.05943 1.28199 1.50535 1.25265 0.95638 0.99743 0.97279 0.85860 0.79229 0.80786 0.78437 1.20362 1.20920 1.19415 1.19700 0.93369 0.82221 1.47637 0.87920 1.41869 1.09190 1.04631 1.64299 1.19801 0.88394 0.84707 0.84589 1.90527 1.13747 1.87046 1.55419 1.21723 0.94358 0.91044 1.01056 1.60087 1.18677 0.99455 1.51352 1.21507 0.94920 0.89359 0.96322 0.94797 1.21588 1.01072 0.95912 0.96280 1.21515 0.98310 0.94898 1.00843 1.21937 1.00912 0.98999 0.95040 1.21027 0.84890 0.98153 0.91255 0.88795 1.46097 1.28095 1.10154 1.52350 1.17752 0.83262 0.84572 0.78858 1.90805 1.62006 1.26837 1.61018 1.21844 1.00196 0.97414 1.05643 1.23541 0.88083 0.98926 0.85274 1.68601 1.10504 1.27424 1.16988 1.25348 0.97448 0.82787 0.91533 1.68512 1.11828 1.33033 1.09754 1.23512 0.88910 0.96485 0.89316 1.22045 0.99706 0.93149 1.02002 0.91844 0.77483 0.89623 0.93988 0.82961 0.91703 0.90756 0.92454 0.91658 0.90440 0.91444 0.76457 0.80106 0.78003 0.81263 0.91078 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.93 5.29 -10.96 -0.06 -13.98 16 10 C 0.44 10.01 7.82 -10.98 -0.09 9.92 16 11 O -0.58 -15.42 15.78 5.54 0.09 -15.34 16 12 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 13 N -0.66 -9.50 5.93 -108.00 -0.64 -10.14 16 14 C 0.09 0.89 2.32 -67.72 -0.16 0.74 16 15 H 0.03 0.30 6.16 -51.93 -0.32 -0.02 16 16 C -0.11 -1.09 5.42 -26.74 -0.15 -1.23 16 17 C -0.12 -0.95 5.76 -26.73 -0.15 -1.10 16 18 C -0.13 -1.03 5.60 -26.73 -0.15 -1.18 16 19 C 0.15 1.20 2.78 -67.93 -0.19 1.01 16 20 H 0.09 0.82 7.57 -51.93 -0.39 0.43 16 21 N -0.71 -5.29 4.19 -54.75 -0.23 -5.52 16 22 C 0.57 5.13 7.75 -12.34 -0.10 5.04 16 23 O -0.53 -6.31 16.11 5.31 0.09 -6.22 16 24 C -0.24 -1.94 5.91 -104.70 -0.62 -2.56 16 25 C 0.21 1.70 10.88 -16.78 -0.18 1.52 16 26 N -0.52 -4.39 10.42 -14.25 -0.15 -4.54 16 27 C 0.32 2.33 12.27 -92.03 -1.13 1.20 16 28 N -0.52 -4.37 10.42 -14.24 -0.15 -4.52 16 29 C 0.19 1.36 10.81 -16.77 -0.18 1.18 16 30 C -0.13 -1.10 4.88 -26.73 -0.13 -1.23 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 33 H 0.09 1.30 7.43 -51.93 -0.39 0.92 16 34 H 0.04 0.60 8.05 -51.93 -0.42 0.19 16 35 H 0.35 5.23 8.05 -39.29 -0.32 4.91 16 36 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.45 7.60 -51.93 -0.39 0.05 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.40 2.40 5.00 -40.82 -0.20 2.20 16 43 H 0.18 1.27 7.75 -52.49 -0.41 0.86 16 44 H 0.20 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.17 0.84 6.54 -52.49 -0.34 0.50 16 46 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -33.51 387.29 -9.36 -42.87 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -6.36 Total: 13.02 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -3.49 Total: 6.22 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.50 Total: -62.16 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.17 Total: -21.56 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.51 -9.36 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567162158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.231 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds