Wall clock time and date at job start Wed Apr 1 2020 05:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.47064 * 270.00133 * 3 2 1 5 5 H 1.48501 * 109.47142 * 30.00594 * 3 2 1 6 6 H 1.48507 * 109.46923 * 150.00433 * 3 2 1 7 7 C 1.38952 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00266 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99842 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00047 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99798 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47094 * 179.97438 * 12 10 9 14 14 C 1.46895 * 111.00165 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47141 * 324.99348 * 14 13 12 16 16 C 1.52995 * 109.47468 * 85.00058 * 14 13 12 17 17 C 1.52996 * 109.47338 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47203 * 299.99576 * 17 16 14 19 19 C 1.53002 * 109.47083 * 59.99917 * 18 17 16 20 20 H 1.08993 * 109.47231 * 179.97438 * 19 18 17 21 21 N 1.46504 * 109.46550 * 60.00003 * 19 18 17 22 22 C 1.34777 * 120.00215 * 85.00471 * 21 19 18 23 23 O 1.21561 * 119.99501 * 359.97438 * 22 21 19 24 24 C 1.47820 * 120.00399 * 179.97438 * 22 21 19 25 25 C 1.39948 * 120.94208 * 179.97438 * 24 22 21 26 26 N 1.32147 * 118.92391 * 179.72965 * 25 24 22 27 27 C 1.31864 * 120.96882 * 0.25468 * 26 25 24 28 28 N 1.31867 * 122.09575 * 0.02562 * 27 26 25 29 29 C 1.32147 * 120.96831 * 359.97438 * 28 27 26 30 30 C 1.53002 * 109.47187 * 300.00425 * 19 18 17 31 31 H 0.96998 * 119.99671 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99794 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.47156 * 59.99986 * 12 10 9 34 34 H 1.08997 * 109.46630 * 299.99784 * 12 10 9 35 35 H 1.00901 * 110.99913 * 56.04030 * 13 12 10 36 36 H 1.09007 * 109.46910 * 300.00408 * 16 14 13 37 37 H 1.09003 * 109.46996 * 59.99575 * 16 14 13 38 38 H 1.08994 * 109.47340 * 59.99858 * 17 16 14 39 39 H 1.09006 * 109.47017 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.46994 * 300.00524 * 18 17 16 41 41 H 1.08998 * 109.47371 * 179.97438 * 18 17 16 42 42 H 0.96998 * 119.99756 * 264.99577 * 21 19 18 43 43 H 1.08002 * 120.53917 * 0.02562 * 25 24 22 44 44 H 1.08002 * 118.95355 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.53954 * 180.02562 * 29 28 27 46 46 H 1.08996 * 109.46990 * 179.97438 * 30 19 18 47 47 H 1.08999 * 109.46652 * 299.99329 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6527 0.7002 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 7 2.1981 -5.9795 -0.0016 14 6 1.4978 -7.2708 -0.0016 15 1 0.5848 -7.1890 0.5883 16 6 1.1437 -7.6590 -1.4385 17 6 0.4137 -9.0037 -1.4383 18 6 1.3195 -10.0756 -0.8291 19 6 1.6738 -9.6875 0.6079 20 1 2.3187 -10.4514 1.0421 21 7 0.4466 -9.5769 1.4004 22 6 -0.0912 -10.6753 1.9668 23 8 0.4419 -11.7579 1.8196 24 6 -1.3291 -10.5637 2.7669 25 6 -1.9046 -11.6914 3.3632 26 7 -3.0086 -11.5451 4.0745 27 6 -3.5691 -10.3605 4.2215 28 7 -3.0636 -9.2733 3.6726 29 6 -1.9618 -9.3281 2.9451 30 6 2.4037 -8.3428 0.6078 31 1 -0.4849 0.8401 0.0004 32 1 0.3533 -2.3906 0.0002 33 1 0.6173 -4.9205 -0.8913 34 1 0.6167 -4.9208 0.8886 35 1 2.8330 -5.9128 0.7797 36 1 0.4980 -6.8955 -1.8725 37 1 2.0567 -7.7408 -2.0283 38 1 -0.4993 -8.9214 -0.8487 39 1 0.1610 -9.2800 -2.4621 40 1 2.2326 -10.1578 -1.4187 41 1 0.7994 -11.0335 -0.8285 42 1 0.0211 -8.7131 1.5176 43 1 -1.4511 -12.6648 3.2480 44 1 -4.4708 -10.2781 4.8101 45 1 -1.5535 -8.4332 2.4990 46 1 2.6556 -8.0661 1.6315 47 1 3.3167 -8.4251 0.0181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567162158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:09 Heat of formation + Delta-G solvation = -53.142052 kcal Electronic energy + Delta-G solvation = -29880.605837 eV Core-core repulsion = 25675.914301 eV Total energy + Delta-G solvation = -4204.691536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.33758 -41.12404 -40.14842 -39.21205 -36.38269 -35.77156 -35.04421 -34.35925 -33.28190 -33.21311 -31.19795 -30.27648 -27.77044 -26.43041 -25.72311 -25.60306 -23.56609 -22.75412 -22.31260 -21.07119 -20.17087 -19.89022 -19.32317 -18.65991 -18.32342 -17.89075 -16.93674 -16.61537 -16.55467 -16.38349 -16.19526 -16.05959 -15.65773 -15.55521 -15.28932 -15.00305 -14.85539 -14.72955 -14.57541 -14.22185 -13.58792 -13.44304 -13.23446 -13.20214 -13.16057 -12.98552 -12.85058 -12.77278 -12.40804 -12.21897 -12.12083 -12.05151 -11.61007 -11.50111 -11.40475 -11.12011 -11.10587 -10.90978 -10.43597 -10.31344 -10.13348 -10.00086 -9.28538 -8.45885 -5.94176 -0.69619 -0.10617 1.38501 1.42573 1.54761 1.69948 1.94419 2.07446 2.29693 2.69918 2.89587 2.99359 3.06632 3.21951 3.30746 3.47575 3.55903 3.71637 3.76154 3.83613 4.03769 4.18217 4.24857 4.29015 4.33767 4.41975 4.51136 4.52282 4.58910 4.62534 4.64423 4.71522 4.89289 5.06327 5.10732 5.15814 5.19127 5.32056 5.34691 5.38672 5.42256 5.54907 5.71418 5.93708 6.16168 6.33537 6.46814 6.61693 6.86757 7.01364 7.14224 7.58423 8.13790 8.71439 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.002188 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.466711 B =12795.862772 C =14448.243675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.066 3.934 13 N -0.678 5.678 14 C 0.091 3.909 15 H 0.055 0.945 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.126 4.126 19 C 0.157 3.843 20 H 0.088 0.912 21 N -0.704 5.704 22 C 0.575 3.425 23 O -0.562 6.562 24 C -0.248 4.248 25 C 0.203 3.797 26 N -0.537 5.537 27 C 0.314 3.686 28 N -0.536 5.536 29 C 0.189 3.811 30 C -0.122 4.122 31 H 0.277 0.723 32 H 0.397 0.603 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.346 0.654 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.408 0.592 43 H 0.186 0.814 44 H 0.231 0.769 45 H 0.193 0.807 46 H 0.076 0.924 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 -22.617 4.241 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.066 4.066 13 N -0.311 5.311 14 C -0.018 4.018 15 H 0.072 0.928 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.165 4.165 19 C 0.053 3.947 20 H 0.106 0.894 21 N -0.356 5.356 22 C 0.361 3.639 23 O -0.442 6.442 24 C -0.256 4.256 25 C 0.036 3.964 26 N -0.250 5.250 27 C 0.028 3.972 28 N -0.249 5.249 29 C 0.022 3.978 30 C -0.160 4.160 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.165 0.835 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.246 0.754 43 H 0.203 0.797 44 H 0.247 0.753 45 H 0.210 0.790 46 H 0.094 0.906 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.149 -23.110 4.007 24.520 hybrid contribution 0.181 1.334 0.359 1.393 sum -6.968 -21.776 4.367 23.277 Atomic orbital electron populations 1.69663 1.06761 1.29250 1.50419 1.26004 0.96528 1.02327 0.96374 0.84965 0.77935 0.77073 0.78610 1.19752 1.19569 1.19783 1.19644 0.92662 0.84093 1.49820 0.90405 1.41943 1.09337 1.04735 1.65125 1.20958 0.88276 0.86241 0.82051 1.90497 1.15946 1.87992 1.56612 1.21576 0.94038 0.87976 1.03036 1.60074 1.18959 1.00511 1.51531 1.21593 0.95651 0.87628 0.96969 0.92759 1.21554 1.00559 0.96642 0.95840 1.21443 0.98237 0.93711 1.01340 1.21894 1.01051 0.98541 0.94993 1.20928 0.84921 0.97573 0.91315 0.89417 1.45995 1.27722 1.10238 1.51692 1.17844 0.83263 0.84276 0.78550 1.90793 1.63009 1.28085 1.62312 1.21725 1.00013 0.97779 1.06075 1.23698 0.88144 0.99387 0.85142 1.68659 1.10803 1.28033 1.17519 1.25938 0.97915 0.82277 0.91035 1.68592 1.12397 1.33446 1.10481 1.23874 0.88417 0.96933 0.88612 1.21951 0.99276 0.92681 1.02100 0.91328 0.76957 0.88078 0.91199 0.83470 0.92507 0.91947 0.91717 0.91223 0.90004 0.92172 0.75415 0.79730 0.75317 0.79010 0.90556 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.33 -18.56 9.68 84.04 0.81 -17.74 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.57 -28.54 5.29 -306.97 -1.62 -30.17 16 10 C 0.44 19.86 7.82 87.66 0.69 20.55 16 11 O -0.62 -33.52 15.78 -3.07 -0.05 -33.57 16 12 C 0.07 2.03 5.97 85.56 0.51 2.54 16 13 N -0.68 -18.39 5.93 -495.61 -2.94 -21.33 16 14 C 0.09 1.62 2.32 44.92 0.10 1.72 16 15 H 0.05 0.78 6.16 -2.39 -0.01 0.76 16 16 C -0.11 -1.92 5.42 30.59 0.17 -1.75 16 17 C -0.11 -1.53 5.76 30.59 0.18 -1.35 16 18 C -0.13 -1.79 5.60 30.59 0.17 -1.62 16 19 C 0.16 2.22 2.78 44.99 0.13 2.35 16 20 H 0.09 1.43 7.57 -2.39 -0.02 1.41 16 21 N -0.70 -8.97 4.19 -445.42 -1.87 -10.84 16 22 C 0.57 9.58 7.75 86.78 0.67 10.25 16 23 O -0.56 -13.05 16.11 -3.91 -0.06 -13.11 16 24 C -0.25 -3.62 5.91 -19.91 -0.12 -3.74 16 25 C 0.20 3.14 10.88 85.06 0.93 4.07 16 26 N -0.54 -8.44 10.42 -198.98 -2.07 -10.51 16 27 C 0.31 4.13 12.27 180.84 2.22 6.35 16 28 N -0.54 -8.01 10.42 -198.98 -2.07 -10.08 16 29 C 0.19 2.38 10.81 85.06 0.92 3.30 16 30 C -0.12 -1.82 4.88 30.60 0.15 -1.67 16 31 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 32 H 0.40 18.63 7.90 -92.71 -0.73 17.89 16 33 H 0.10 2.84 7.43 -2.39 -0.02 2.82 16 34 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 35 H 0.35 9.94 8.05 -89.69 -0.72 9.22 16 36 H 0.06 1.12 7.45 -2.38 -0.02 1.10 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 0.83 7.60 -2.39 -0.02 0.81 16 39 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.41 3.71 5.00 -92.71 -0.46 3.25 16 43 H 0.19 2.56 7.75 -2.91 -0.02 2.54 16 44 H 0.23 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.19 1.33 6.54 -2.91 -0.02 1.31 16 46 H 0.08 1.10 8.12 -2.39 -0.02 1.08 16 47 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.66 387.29 -1.27 -73.93 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: -0.88 Total: 36.74 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 7.99 Total: 23.06 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -10.29 Total: -131.43 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.11 Total: -46.68 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -72.66 -1.27 -73.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567162158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.788 kcal (2) G-P(sol) polarization free energy of solvation -72.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds