Wall clock time and date at job start Wed Apr 1 2020 04:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 S 1.65603 * 120.00153 * 2 1 4 4 O 1.42102 * 104.27650 * 308.92730 * 3 2 1 5 5 O 1.42098 * 104.27898 * 181.06790 * 3 2 1 6 6 C 1.81408 * 104.44779 * 64.99496 * 3 2 1 7 7 C 1.53000 * 109.46799 * 180.02562 * 6 3 2 8 8 C 1.50703 * 109.46912 * 180.02562 * 7 6 3 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.62638 * 359.71455 * 10 8 7 12 12 C 1.52765 * 109.00862 * 233.58544 * 11 10 8 13 13 C 1.53035 * 109.38268 * 305.59133 * 12 11 10 14 14 C 1.53043 * 109.53810 * 61.23936 * 13 12 11 15 15 H 1.09005 * 109.49595 * 58.58664 * 14 13 12 16 16 C 1.53004 * 109.49628 * 178.68148 * 14 13 12 17 17 C 1.53003 * 109.46899 * 294.83788 * 16 14 13 18 18 N 1.46504 * 109.46765 * 180.02562 * 17 16 14 19 19 C 1.36936 * 119.99837 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99842 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00011 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99663 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00341 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46803 * 89.99798 * 23 21 19 25 25 H 1.48495 * 109.47364 * 210.00357 * 23 21 19 26 26 H 1.48499 * 109.46734 * 330.00358 * 23 21 19 27 27 C 1.46920 * 120.63268 * 180.02562 * 10 8 7 28 28 H 1.09003 * 109.47147 * 60.00115 * 1 2 3 29 29 H 1.09003 * 109.47247 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47583 * 299.99960 * 1 2 3 31 31 H 0.96997 * 120.00199 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46823 * 60.00309 * 6 3 2 33 33 H 1.08992 * 109.47429 * 300.00345 * 6 3 2 34 34 H 1.09002 * 109.47398 * 300.00340 * 7 6 3 35 35 H 1.09001 * 109.47194 * 60.00520 * 7 6 3 36 36 H 1.09000 * 109.59185 * 353.42700 * 11 10 8 37 37 H 1.09004 * 109.58365 * 113.84987 * 11 10 8 38 38 H 1.09003 * 109.56176 * 185.55325 * 12 11 10 39 39 H 1.09000 * 109.36023 * 65.50261 * 12 11 10 40 40 H 1.09007 * 109.46249 * 301.21815 * 13 12 11 41 41 H 1.09002 * 109.44787 * 181.25329 * 13 12 11 42 42 H 1.08997 * 109.47050 * 54.84167 * 16 14 13 43 43 H 1.08997 * 109.46804 * 174.84142 * 16 14 13 44 44 H 1.08991 * 109.47236 * 299.99752 * 17 16 14 45 45 H 1.08997 * 109.47103 * 60.00537 * 17 16 14 46 46 H 0.96996 * 119.99808 * 359.97438 * 18 17 16 47 47 H 0.97007 * 119.99455 * 179.97438 * 22 21 19 48 48 H 1.09006 * 109.58607 * 246.15487 * 27 10 8 49 49 H 1.09000 * 109.58547 * 6.57598 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1703 -1.0713 5 8 3.6606 1.0492 -0.0257 6 6 1.8762 2.1974 1.5921 7 6 2.5888 3.5459 1.7131 8 6 2.2431 4.1797 3.0360 9 8 1.4997 3.6093 3.8058 10 7 2.7594 5.3810 3.3631 11 6 3.6655 6.0819 2.4431 12 6 4.9512 6.4390 3.1868 13 6 4.6040 7.2287 4.4509 14 6 3.7355 6.3669 5.3703 15 1 4.2714 5.4524 5.6250 16 6 3.4163 7.1452 6.6484 17 6 4.7075 7.3915 7.4314 18 7 4.4018 8.1362 8.6554 19 6 5.4080 8.4741 9.5206 20 1 6.4267 8.1912 9.3009 21 6 5.1184 9.1802 10.6801 22 7 3.8765 9.5245 10.9481 23 14 6.4908 9.6405 11.8609 24 1 7.0414 10.9678 11.4864 25 1 5.9545 9.6994 13.2444 26 1 7.5674 8.6201 11.7903 27 6 2.4321 6.0113 4.6492 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9499 -0.8400 0.0004 32 1 2.1956 1.5431 2.4033 33 1 0.7986 2.3497 1.6510 34 1 3.6666 3.3940 1.6540 35 1 2.2690 4.2000 0.9019 36 1 3.9013 5.4345 1.5984 37 1 3.1885 6.9942 2.0848 38 1 5.5889 7.0448 2.5431 39 1 5.4755 5.5239 3.4620 40 1 4.0580 8.1314 4.1768 41 1 5.5218 7.5033 4.9708 42 1 2.9615 8.1009 6.3877 43 1 2.7239 6.5685 7.2616 44 1 5.1623 6.4359 7.6920 45 1 5.3999 7.9682 6.8182 46 1 3.4868 8.3906 8.8525 47 1 3.6741 10.0176 11.7586 48 1 1.8522 6.9177 4.4749 49 1 1.8544 5.3173 5.2597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568056379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:34 Heat of formation + Delta-G solvation = -108.983740 kcal Electronic energy + Delta-G solvation = -28415.081896 eV Core-core repulsion = 24311.120084 eV Total energy + Delta-G solvation = -4103.961813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56245 -38.09593 -37.59918 -36.46156 -35.53046 -35.42242 -33.93834 -33.28846 -32.09949 -30.80571 -27.88451 -26.52952 -26.35115 -24.94695 -23.74426 -22.38207 -21.47594 -20.13257 -19.85958 -19.28126 -18.35597 -17.77322 -17.02491 -16.97803 -16.48164 -16.10612 -16.09649 -15.33027 -14.90462 -14.81933 -14.51607 -14.42943 -14.26708 -13.91890 -13.70131 -13.38880 -13.28949 -13.23750 -13.04012 -12.96481 -12.84336 -12.59173 -12.48924 -12.17100 -12.09442 -12.02176 -11.48907 -11.36596 -11.26947 -11.05472 -10.98550 -10.78010 -10.61016 -10.51082 -10.20587 -10.19631 -10.08476 -9.95110 -9.67835 -8.88771 -8.80636 -6.90035 -5.75336 -3.03830 -0.28331 2.17073 2.28639 2.66694 3.24616 3.44020 3.48892 3.50903 3.70494 3.83056 4.12405 4.25551 4.43388 4.48164 4.59395 4.71449 4.72489 4.78439 4.86264 4.88726 4.92056 5.11528 5.13477 5.18815 5.20160 5.29157 5.36503 5.54593 5.57255 5.59594 5.69555 5.71179 5.88601 5.95664 6.07724 6.17261 6.22228 6.32604 6.35837 6.41930 6.46022 6.86765 6.91498 7.10349 7.70682 7.84746 8.43902 9.54656 10.13715 10.48064 11.47663 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027250 B = 0.001664 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.283044 B =16817.965962 C =17103.539572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.123 6.123 3 S 2.615 3.385 4 O -0.953 6.953 5 O -0.955 6.955 6 C -0.613 4.613 7 C -0.135 4.135 8 C 0.523 3.477 9 O -0.537 6.537 10 N -0.608 5.608 11 C 0.101 3.899 12 C -0.137 4.137 13 C -0.119 4.119 14 C -0.096 4.096 15 H 0.074 0.926 16 C -0.120 4.120 17 C 0.154 3.846 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.115 3.885 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.419 0.581 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.016 0.984 45 H 0.020 0.980 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.070 0.930 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.322 -17.104 -27.256 32.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.882 5.882 3 S 2.705 3.295 4 O -0.943 6.943 5 O -0.945 6.945 6 C -0.742 4.742 7 C -0.176 4.176 8 C 0.309 3.691 9 O -0.414 6.414 10 N -0.341 5.341 11 C -0.022 4.022 12 C -0.175 4.175 13 C -0.156 4.156 14 C -0.115 4.115 15 H 0.092 0.908 16 C -0.158 4.158 17 C 0.027 3.973 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.007 4.007 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.253 0.747 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.033 0.967 45 H 0.038 0.962 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.150 -16.927 -27.472 32.849 hybrid contribution 0.298 0.041 1.493 1.523 sum -5.852 -16.885 -25.979 31.532 Atomic orbital electron populations 1.21547 0.78545 1.04504 1.02116 1.55345 1.16119 1.24572 1.92163 1.04934 0.73750 0.74008 0.76763 1.93615 1.78821 1.72332 1.49539 1.93627 1.32581 1.81155 1.87181 1.30423 1.11900 1.07616 1.24282 1.21398 1.02686 0.94854 0.98690 1.20134 0.80384 0.80689 0.87904 1.90709 1.36557 1.62127 1.51969 1.48132 1.47198 1.19234 1.19562 1.21791 0.90699 0.97606 0.92056 1.21881 0.96486 1.01260 0.97888 1.21664 1.00927 0.98050 0.94974 1.21452 0.95466 0.99374 0.95238 0.90798 1.21700 0.99574 0.99817 0.94702 1.20662 0.93840 0.94659 0.88143 1.42381 1.08141 1.66220 1.21115 1.19237 0.89208 1.28702 0.99865 0.91236 1.24756 0.96392 1.01400 0.98615 1.69670 1.16977 1.44515 1.27112 0.86176 0.81090 0.78279 0.80571 1.21731 1.21759 1.20793 1.21773 0.97380 0.98119 0.83399 0.91215 0.89814 0.92008 0.74713 0.83940 0.84217 0.87190 0.87240 0.89927 0.90733 0.90393 0.91375 0.91607 0.90469 0.91728 0.91717 0.96654 0.96194 0.78334 0.93542 0.91155 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.24 11.03 59.84 0.66 0.90 16 2 N -1.12 -4.89 6.08 -16.63 -0.10 -4.99 16 3 S 2.61 17.22 5.46 -107.50 -0.59 16.63 16 4 O -0.95 -9.17 17.73 -57.54 -1.02 -10.19 16 5 O -0.96 -9.29 18.08 -57.54 -1.04 -10.33 16 6 C -0.61 -3.69 5.31 37.16 0.20 -3.49 16 7 C -0.13 -0.94 4.05 -27.88 -0.11 -1.05 16 8 C 0.52 5.59 7.70 -10.98 -0.08 5.50 16 9 O -0.54 -7.62 15.39 5.56 0.09 -7.54 16 10 N -0.61 -6.10 2.98 -173.05 -0.52 -6.62 16 11 C 0.10 0.73 6.31 -3.93 -0.02 0.71 16 12 C -0.14 -1.10 6.06 -26.83 -0.16 -1.27 16 13 C -0.12 -1.27 4.96 -26.69 -0.13 -1.41 16 14 C -0.10 -1.19 2.34 -90.52 -0.21 -1.40 16 15 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 16 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16 17 C 0.15 3.10 6.02 -4.04 -0.02 3.07 16 18 N -0.73 -18.96 5.60 -59.91 -0.34 -19.30 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 23 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.12 1.34 5.72 -3.74 -0.02 1.32 16 28 H 0.07 0.24 8.04 -51.93 -0.42 -0.17 16 29 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.06 0.12 7.73 -51.93 -0.40 -0.28 16 31 H 0.42 1.23 8.92 -34.47 -0.31 0.92 16 32 H 0.14 0.81 8.10 -51.92 -0.42 0.39 16 33 H 0.14 0.73 7.73 -51.93 -0.40 0.33 16 34 H 0.11 0.58 7.68 -51.93 -0.40 0.18 16 35 H 0.11 0.53 7.95 -51.93 -0.41 0.12 16 36 H 0.08 0.40 5.93 -51.93 -0.31 0.09 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.93 6.51 -51.93 -0.34 0.59 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.40 6.54 -51.93 -0.34 0.06 16 46 H 0.38 10.37 7.67 -40.82 -0.31 10.06 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.09 1.24 7.01 -51.93 -0.36 0.88 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -38.94 402.43 -10.24 -49.17 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.20 Total: 4.02 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.29 Total: -6.64 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.23 Total: -58.79 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -1.97 Total: -28.06 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 17.22 SS G_CDS: -0.59 Total: 16.63 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.94 -10.24 -49.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568056379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.810 kcal (2) G-P(sol) polarization free energy of solvation -38.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds