Wall clock time and date at job start Wed Apr 1 2020 05:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86802 * 120.00232 * 2 1 4 4 H 1.48498 * 109.47632 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47043 * 300.00585 * 3 2 1 6 6 H 1.48501 * 109.46727 * 60.00508 * 3 2 1 7 7 C 1.38953 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00315 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00327 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00052 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00176 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47132 * 180.02562 * 12 10 9 14 14 C 1.46894 * 110.99980 * 185.83165 * 13 12 10 15 15 C 1.52999 * 110.05562 * 302.66897 * 14 13 12 16 16 N 1.46504 * 109.47148 * 301.68913 * 15 14 13 17 17 C 1.34773 * 119.99891 * 183.75192 * 16 15 14 18 18 O 1.21511 * 120.00274 * 0.02562 * 17 16 15 19 19 C 1.48153 * 119.99661 * 180.02562 * 17 16 15 20 20 C 1.39716 * 120.18494 * 179.97438 * 19 17 16 21 21 C 1.38826 * 117.90255 * 180.02562 * 20 19 17 22 22 C 1.38566 * 118.06732 * 0.02562 * 21 20 19 23 23 N 1.32179 * 120.07075 * 359.97438 * 22 21 20 24 24 N 1.28354 * 122.29669 * 359.71195 * 23 22 21 25 25 C 1.54261 * 110.03426 * 181.25011 * 14 13 12 26 26 C 1.54890 * 104.19932 * 264.32509 * 25 14 13 27 27 C 1.54885 * 102.74465 * 322.05663 * 26 25 14 28 28 C 1.53880 * 110.03451 * 64.08394 * 14 13 12 29 29 H 0.97005 * 120.00348 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99582 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.46861 * 60.00360 * 12 10 9 32 32 H 1.09000 * 109.46768 * 300.00463 * 12 10 9 33 33 H 1.00896 * 110.99851 * 61.87704 * 13 12 10 34 34 H 1.08999 * 109.47402 * 61.69030 * 15 14 13 35 35 H 1.09002 * 109.47097 * 181.69264 * 15 14 13 36 36 H 0.97006 * 119.99427 * 3.75500 * 16 15 14 37 37 H 1.08004 * 121.04776 * 359.97438 * 20 19 17 38 38 H 1.08001 * 120.96308 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.96961 * 180.02562 * 22 21 20 40 40 H 1.09006 * 110.49000 * 145.64436 * 25 14 13 41 41 H 1.09009 * 110.48576 * 23.00321 * 25 14 13 42 42 H 1.09002 * 110.75529 * 80.36979 * 26 25 14 43 43 H 1.08998 * 110.75690 * 203.73901 * 26 25 14 44 44 H 1.09010 * 110.48669 * 156.61798 * 27 26 25 45 45 H 1.09002 * 110.48738 * 279.25983 * 27 26 25 46 46 H 1.09007 * 110.03048 * 359.97438 * 28 14 13 47 47 H 1.09000 * 110.03277 * 238.56993 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1983 -5.9796 -0.0027 14 6 1.5034 -7.2662 -0.1426 15 6 0.4809 -7.4353 0.9829 16 7 1.1623 -7.3571 2.2775 17 6 0.4696 -7.5553 3.4166 18 8 -0.7198 -7.7993 3.3698 19 6 1.1586 -7.4757 4.7257 20 6 0.4443 -7.6799 5.9090 21 6 1.1369 -7.5937 7.1091 22 6 2.4924 -7.3102 7.0606 23 7 3.0903 -7.1310 5.8955 24 7 2.4594 -7.2145 4.7809 25 6 2.5226 -8.4236 -0.1090 26 6 2.8071 -8.7228 -1.6019 27 6 1.4163 -8.5389 -2.2583 28 6 0.7999 -7.3395 -1.5092 29 1 -0.4851 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6168 -4.9201 -0.8919 32 1 0.6173 -4.9212 0.8880 33 1 2.7707 -5.9662 0.8281 34 1 -0.2661 -6.6443 0.9171 35 1 -0.0074 -8.4052 0.8874 36 1 2.1119 -7.1627 2.3148 37 1 -0.6135 -7.8971 5.8907 38 1 0.6338 -7.7432 8.0530 39 1 3.0612 -7.2365 7.9757 40 1 2.0917 -9.2975 0.3798 41 1 3.4360 -8.1131 0.3986 42 1 3.5238 -8.0095 -2.0090 43 1 3.1627 -9.7451 -1.7300 44 1 1.5221 -8.3125 -3.3193 45 1 0.8066 -9.4313 -2.1167 46 1 0.9738 -6.4201 -2.0684 47 1 -0.2699 -7.4956 -1.3705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568244595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:23 Heat of formation + Delta-G solvation = -12.275777 kcal Electronic energy + Delta-G solvation = -30583.185521 eV Core-core repulsion = 26380.266080 eV Total energy + Delta-G solvation = -4202.919441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50705 -40.17652 -38.91501 -37.84983 -34.97514 -34.07686 -33.59873 -33.36295 -32.86522 -31.17307 -29.19139 -28.90342 -26.68369 -25.73854 -24.98730 -24.34313 -23.67173 -21.46998 -20.68887 -19.40439 -19.06772 -18.45187 -17.83628 -17.71640 -17.10008 -16.50569 -16.08095 -15.86338 -15.49441 -15.28326 -15.02923 -14.85466 -14.52929 -14.37739 -14.05056 -13.90959 -13.65025 -13.52064 -13.42789 -12.99445 -12.82421 -12.23557 -11.89782 -11.60583 -11.50724 -11.41236 -11.14690 -11.07714 -11.06351 -10.97737 -10.78363 -10.71689 -10.52963 -10.46649 -10.35472 -10.31943 -10.19101 -10.16244 -9.48391 -9.30428 -8.47673 -8.03733 -7.92379 -6.38533 -3.79084 0.08178 0.35729 2.36594 2.70930 3.18445 3.28716 3.32085 3.36281 3.52668 3.94633 4.01835 4.07397 4.19809 4.28024 4.30085 4.45519 4.50478 4.57227 4.70192 4.74798 5.11333 5.17566 5.24408 5.26596 5.28347 5.39022 5.43580 5.46320 5.57953 5.66448 5.68554 5.75296 5.82576 5.85087 5.92789 5.97838 6.02985 6.10029 6.12642 6.22139 6.32358 6.42258 7.15023 7.21868 7.58463 7.59785 7.81634 8.09940 8.18661 8.64995 9.21624 9.58193 10.09942 10.79364 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007195 B = 0.003424 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3890.532061 B = 8174.690981 C =10846.526139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.044 3.956 13 N -0.646 5.646 14 C 0.101 3.899 15 C 0.087 3.913 16 N -0.702 5.702 17 C 0.577 3.423 18 O -0.528 6.528 19 C 0.024 3.976 20 C -0.066 4.066 21 C -0.122 4.122 22 C 0.055 3.945 23 N -0.236 5.236 24 N -0.207 5.207 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.112 4.112 29 H 0.270 0.730 30 H 0.391 0.609 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.346 0.654 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.411 0.589 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.179 0.821 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 -20.529 9.105 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.463 6.463 12 C -0.088 4.088 13 N -0.278 5.278 14 C 0.009 3.991 15 C -0.038 4.038 16 N -0.354 5.354 17 C 0.359 3.641 18 O -0.404 6.404 19 C -0.122 4.122 20 C -0.095 4.095 21 C -0.151 4.151 22 C -0.107 4.107 23 N -0.079 5.079 24 N -0.054 5.054 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.158 4.158 28 C -0.150 4.150 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.166 0.834 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.248 0.752 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.196 0.804 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.167 -20.139 7.529 21.501 hybrid contribution -1.640 0.723 1.915 2.623 sum -1.806 -19.417 9.444 21.667 Atomic orbital electron populations 1.69621 1.05927 1.27968 1.50882 1.25248 0.95613 0.99671 0.97443 0.85818 0.79753 0.81228 0.77663 1.19201 1.20758 1.20832 1.19750 0.93379 0.82231 1.47317 0.87887 1.41864 1.09145 1.04614 1.64609 1.19781 0.88391 0.84620 0.84382 1.90530 1.13673 1.87052 1.55066 1.21755 0.94615 0.91095 1.01339 1.60333 1.21969 0.99429 1.46100 1.21956 0.92535 0.90820 0.93775 1.22421 0.96449 1.03030 0.81926 1.45814 1.13878 1.70247 1.05458 1.17530 0.86086 0.77587 0.82847 1.90807 1.14101 1.48675 1.86792 1.22857 0.93321 1.00306 0.95739 1.22453 1.02748 0.92968 0.91339 1.22479 0.95350 0.97434 0.99822 1.24571 0.93763 0.93274 0.99140 1.73196 1.30332 1.09572 0.94842 1.73262 1.06132 1.06133 1.19872 1.22433 0.98584 0.96243 0.97829 1.22409 0.97357 1.00969 0.94712 1.22302 0.96406 0.97536 0.99525 1.22224 0.98695 1.00074 0.94031 0.91989 0.77567 0.89280 0.93788 0.83402 0.90598 0.90424 0.75165 0.81947 0.82346 0.80373 0.91338 0.90796 0.90572 0.92034 0.91549 0.92015 0.89703 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 9 N -0.57 -14.55 5.29 -10.96 -0.06 -14.61 16 10 C 0.44 10.54 7.84 -10.99 -0.09 10.45 16 11 O -0.58 -15.83 15.90 5.55 0.09 -15.74 16 12 C 0.04 0.78 5.29 -4.97 -0.03 0.75 16 13 N -0.65 -9.96 5.51 -100.09 -0.55 -10.51 16 14 C 0.10 1.20 0.55 -130.49 -0.07 1.12 16 15 C 0.09 1.03 3.72 -4.04 -0.02 1.02 16 16 N -0.70 -8.65 5.17 -61.15 -0.32 -8.97 16 17 C 0.58 7.69 7.82 -12.19 -0.10 7.59 16 18 O -0.53 -8.09 16.39 5.36 0.09 -8.00 16 19 C 0.02 0.29 6.83 -82.83 -0.57 -0.28 16 20 C -0.07 -0.59 9.73 -38.81 -0.38 -0.97 16 21 C -0.12 -0.78 10.20 -39.24 -0.40 -1.18 16 22 C 0.05 0.42 11.31 -17.28 -0.20 0.23 16 23 N -0.24 -2.81 11.51 30.58 0.35 -2.46 16 24 N -0.21 -2.69 10.75 33.32 0.36 -2.33 16 25 C -0.11 -1.18 5.58 -25.07 -0.14 -1.32 16 26 C -0.12 -1.17 6.91 -24.74 -0.17 -1.35 16 27 C -0.12 -1.16 6.83 -25.08 -0.17 -1.33 16 28 C -0.11 -1.25 5.54 -25.61 -0.14 -1.39 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 31 H 0.09 1.44 6.45 -51.93 -0.33 1.11 16 32 H 0.04 0.74 6.69 -51.93 -0.35 0.40 16 33 H 0.35 5.55 7.21 -39.29 -0.28 5.27 16 34 H 0.08 0.99 6.65 -51.93 -0.35 0.65 16 35 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.41 5.02 6.46 -40.82 -0.26 4.75 16 37 H 0.16 1.25 7.72 -52.48 -0.41 0.84 16 38 H 0.16 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.07 0.65 7.83 -51.93 -0.41 0.24 16 41 H 0.07 0.81 7.89 -51.92 -0.41 0.40 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 1.10 6.71 -51.93 -0.35 0.75 16 47 H 0.07 0.66 7.67 -51.93 -0.40 0.26 16 LS Contribution 389.20 15.07 5.87 5.87 Total: -1.00 -34.53 389.20 -7.51 -42.03 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -6.33 Total: 17.26 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -2.70 Total: 5.29 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: 0.51 Total: -63.08 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.18 Total: -23.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.53 -7.51 -42.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568244595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.756 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds