Wall clock time and date at job start Wed Apr 1 2020 05:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86802 * 120.00232 * 2 1 4 4 H 1.48498 * 109.47632 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47043 * 300.00585 * 3 2 1 6 6 H 1.48501 * 109.46727 * 60.00508 * 3 2 1 7 7 C 1.38953 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00315 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00327 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00052 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00176 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47132 * 180.02562 * 12 10 9 14 14 C 1.46894 * 110.99980 * 185.83165 * 13 12 10 15 15 C 1.52999 * 110.05562 * 302.66897 * 14 13 12 16 16 N 1.46504 * 109.47148 * 301.68913 * 15 14 13 17 17 C 1.34773 * 119.99891 * 183.75192 * 16 15 14 18 18 O 1.21511 * 120.00274 * 0.02562 * 17 16 15 19 19 C 1.48153 * 119.99661 * 180.02562 * 17 16 15 20 20 C 1.39716 * 120.18494 * 179.97438 * 19 17 16 21 21 C 1.38826 * 117.90255 * 180.02562 * 20 19 17 22 22 C 1.38566 * 118.06732 * 0.02562 * 21 20 19 23 23 N 1.32179 * 120.07075 * 359.97438 * 22 21 20 24 24 N 1.28354 * 122.29669 * 359.71195 * 23 22 21 25 25 C 1.54261 * 110.03426 * 181.25011 * 14 13 12 26 26 C 1.54890 * 104.19932 * 264.32509 * 25 14 13 27 27 C 1.54885 * 102.74465 * 322.05663 * 26 25 14 28 28 C 1.53880 * 110.03451 * 64.08394 * 14 13 12 29 29 H 0.97005 * 120.00348 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99582 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.46861 * 60.00360 * 12 10 9 32 32 H 1.09000 * 109.46768 * 300.00463 * 12 10 9 33 33 H 1.00896 * 110.99851 * 61.87704 * 13 12 10 34 34 H 1.08999 * 109.47402 * 61.69030 * 15 14 13 35 35 H 1.09002 * 109.47097 * 181.69264 * 15 14 13 36 36 H 0.97006 * 119.99427 * 3.75500 * 16 15 14 37 37 H 1.08004 * 121.04776 * 359.97438 * 20 19 17 38 38 H 1.08001 * 120.96308 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.96961 * 180.02562 * 22 21 20 40 40 H 1.09006 * 110.49000 * 145.64436 * 25 14 13 41 41 H 1.09009 * 110.48576 * 23.00321 * 25 14 13 42 42 H 1.09002 * 110.75529 * 80.36979 * 26 25 14 43 43 H 1.08998 * 110.75690 * 203.73901 * 26 25 14 44 44 H 1.09010 * 110.48669 * 156.61798 * 27 26 25 45 45 H 1.09002 * 110.48738 * 279.25983 * 27 26 25 46 46 H 1.09007 * 110.03048 * 359.97438 * 28 14 13 47 47 H 1.09000 * 110.03277 * 238.56993 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1983 -5.9796 -0.0027 14 6 1.5034 -7.2662 -0.1426 15 6 0.4809 -7.4353 0.9829 16 7 1.1623 -7.3571 2.2775 17 6 0.4696 -7.5553 3.4166 18 8 -0.7198 -7.7993 3.3698 19 6 1.1586 -7.4757 4.7257 20 6 0.4443 -7.6799 5.9090 21 6 1.1369 -7.5937 7.1091 22 6 2.4924 -7.3102 7.0606 23 7 3.0903 -7.1310 5.8955 24 7 2.4594 -7.2145 4.7809 25 6 2.5226 -8.4236 -0.1090 26 6 2.8071 -8.7228 -1.6019 27 6 1.4163 -8.5389 -2.2583 28 6 0.7999 -7.3395 -1.5092 29 1 -0.4851 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6168 -4.9201 -0.8919 32 1 0.6173 -4.9212 0.8880 33 1 2.7707 -5.9662 0.8281 34 1 -0.2661 -6.6443 0.9171 35 1 -0.0074 -8.4052 0.8874 36 1 2.1119 -7.1627 2.3148 37 1 -0.6135 -7.8971 5.8907 38 1 0.6338 -7.7432 8.0530 39 1 3.0612 -7.2365 7.9757 40 1 2.0917 -9.2975 0.3798 41 1 3.4360 -8.1131 0.3986 42 1 3.5238 -8.0095 -2.0090 43 1 3.1627 -9.7451 -1.7300 44 1 1.5221 -8.3125 -3.3193 45 1 0.8066 -9.4313 -2.1167 46 1 0.9738 -6.4201 -2.0684 47 1 -0.2699 -7.4956 -1.3705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568244595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:23 Heat of formation + Delta-G solvation = -39.607968 kcal Electronic energy + Delta-G solvation = -30584.370734 eV Core-core repulsion = 26380.266080 eV Total energy + Delta-G solvation = -4204.104654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28892 -41.20406 -40.16589 -39.49723 -36.09408 -35.86933 -34.72788 -34.20784 -33.72786 -33.25006 -30.29951 -29.79081 -28.10068 -26.87015 -25.87585 -25.59899 -24.83373 -22.41561 -21.62300 -20.99452 -20.26466 -19.87923 -19.36968 -18.51177 -17.94871 -17.69820 -17.17170 -16.90626 -16.84307 -16.47236 -16.37641 -15.97765 -15.84182 -15.63284 -15.40299 -15.10476 -14.76681 -14.63124 -14.25704 -14.17262 -13.97122 -13.84757 -13.52824 -13.06411 -12.79137 -12.67867 -12.45823 -12.41002 -12.14266 -12.07448 -11.91119 -11.86953 -11.74631 -11.52442 -11.36897 -11.36204 -11.29723 -11.25646 -10.89347 -10.37153 -10.30826 -10.02577 -9.39264 -8.47933 -5.96748 -0.65185 -0.29886 1.34993 1.39923 1.47239 1.54561 1.79403 2.03751 2.27529 2.53930 2.71021 2.86572 3.18815 3.37445 3.41830 3.52934 3.54737 3.68125 3.75797 3.83686 3.88950 4.10663 4.21560 4.29115 4.30798 4.37082 4.47104 4.56749 4.60224 4.65886 4.72630 4.81314 4.87008 4.92287 5.00086 5.08286 5.11739 5.13500 5.18012 5.30744 5.31790 5.39758 5.59086 5.87869 6.08137 6.15591 6.34334 6.58427 6.81556 7.11450 7.44258 7.54441 8.10042 8.69819 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007195 B = 0.003424 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3890.532061 B = 8174.690981 C =10846.526139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.618 6.618 12 C 0.064 3.936 13 N -0.655 5.655 14 C 0.106 3.894 15 C 0.092 3.908 16 N -0.700 5.700 17 C 0.575 3.425 18 O -0.554 6.554 19 C 0.002 3.998 20 C -0.076 4.076 21 C -0.097 4.097 22 C 0.059 3.941 23 N -0.276 5.276 24 N -0.238 5.238 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.115 4.115 28 C -0.114 4.114 29 H 0.277 0.723 30 H 0.394 0.606 31 H 0.107 0.893 32 H 0.054 0.946 33 H 0.340 0.660 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.411 0.589 37 H 0.174 0.826 38 H 0.207 0.793 39 H 0.219 0.781 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 -21.577 10.499 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.504 6.504 12 C -0.068 4.068 13 N -0.287 5.287 14 C 0.015 3.985 15 C -0.034 4.034 16 N -0.351 5.351 17 C 0.358 3.642 18 O -0.432 6.432 19 C -0.145 4.145 20 C -0.105 4.105 21 C -0.126 4.126 22 C -0.104 4.104 23 N -0.119 5.119 24 N -0.084 5.084 25 C -0.147 4.147 26 C -0.153 4.153 27 C -0.152 4.152 28 C -0.152 4.152 29 H 0.087 0.913 30 H 0.228 0.772 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.248 0.752 37 H 0.191 0.809 38 H 0.224 0.776 39 H 0.236 0.764 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.987 -21.204 8.905 23.020 hybrid contribution -1.370 0.996 1.580 2.316 sum -2.357 -20.209 10.485 22.888 Atomic orbital electron populations 1.69682 1.06860 1.29202 1.50488 1.26039 0.96530 1.02401 0.96284 0.84878 0.78053 0.77090 0.78363 1.19775 1.19456 1.19618 1.19704 0.92673 0.84017 1.49823 0.90350 1.41934 1.09210 1.04776 1.65263 1.20822 0.88274 0.86029 0.82177 1.90495 1.15680 1.87923 1.56299 1.21528 0.94214 0.88567 1.02536 1.60341 1.22038 1.00384 1.45905 1.22045 0.92832 0.89356 0.94306 1.22390 0.96047 1.03237 0.81677 1.45847 1.13830 1.69812 1.05592 1.17809 0.85874 0.76931 0.83555 1.90775 1.15017 1.50116 1.87279 1.22813 0.93603 1.02071 0.96010 1.22727 1.03393 0.93014 0.91376 1.23007 0.94625 0.94360 1.00620 1.25271 0.94851 0.91231 0.99042 1.73088 1.31505 1.11341 0.95938 1.73169 1.06680 1.07505 1.21092 1.22428 0.97853 0.96014 0.98376 1.22397 0.97318 1.01525 0.94106 1.22301 0.96092 0.97496 0.99332 1.22256 0.99720 0.99987 0.93274 0.91327 0.77208 0.87529 0.92837 0.84060 0.91789 0.89148 0.75185 0.80880 0.77563 0.76446 0.89730 0.91632 0.92590 0.90111 0.91311 0.90020 0.91732 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.88 13.05 21.66 0.28 -50.59 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.94 29.55 68.60 2.03 45.96 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 N -0.57 -30.52 5.29 -306.98 -1.62 -32.14 16 10 C 0.44 21.65 7.84 87.66 0.69 22.33 16 11 O -0.62 -35.15 15.90 -3.07 -0.05 -35.20 16 12 C 0.06 2.29 5.29 85.56 0.45 2.74 16 13 N -0.65 -20.60 5.51 -470.57 -2.59 -23.20 16 14 C 0.11 2.46 0.55 4.25 0.00 2.46 16 15 C 0.09 2.13 3.72 86.38 0.32 2.45 16 16 N -0.70 -17.53 5.17 -465.68 -2.41 -19.94 16 17 C 0.57 15.55 7.82 86.88 0.68 16.23 16 18 O -0.55 -17.05 16.39 -3.75 -0.06 -17.11 16 19 C 0.00 0.04 6.83 41.99 0.29 0.33 16 20 C -0.08 -1.27 9.73 22.77 0.22 -1.05 16 21 C -0.10 -0.94 10.20 22.49 0.23 -0.71 16 22 C 0.06 0.76 11.31 84.72 0.96 1.72 16 23 N -0.28 -6.47 11.51 -57.15 -0.66 -7.12 16 24 N -0.24 -6.32 10.75 -48.48 -0.52 -6.84 16 25 C -0.11 -2.18 5.58 31.67 0.18 -2.00 16 26 C -0.12 -2.19 6.91 31.88 0.22 -1.97 16 27 C -0.11 -2.00 6.83 31.67 0.22 -1.78 16 28 C -0.11 -2.42 5.54 31.32 0.17 -2.25 16 29 H 0.28 14.28 8.31 -92.70 -0.77 13.51 16 30 H 0.39 20.07 7.90 -92.70 -0.73 19.34 16 31 H 0.11 3.46 6.45 -2.39 -0.02 3.45 16 32 H 0.05 1.83 6.69 -2.39 -0.02 1.82 16 33 H 0.34 11.35 7.21 -89.70 -0.65 10.71 16 34 H 0.06 1.66 6.65 -2.39 -0.02 1.64 16 35 H 0.09 1.90 8.11 -2.39 -0.02 1.88 16 36 H 0.41 10.44 6.46 -92.70 -0.60 9.84 16 37 H 0.17 2.42 7.72 -2.91 -0.02 2.40 16 38 H 0.21 -0.05 8.06 -2.91 -0.02 -0.07 16 39 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.08 1.45 7.83 -2.38 -0.02 1.43 16 41 H 0.06 1.44 7.89 -2.38 -0.02 1.42 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 46 H 0.06 1.65 6.71 -2.38 -0.02 1.64 16 47 H 0.08 1.47 7.67 -2.39 -0.02 1.45 16 Total: -1.00 -77.95 389.20 -0.63 -78.58 By element: Atomic # 1 Polarization: 48.89 SS G_CDS: -0.93 Total: 47.96 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 5.91 Total: 19.64 kcal Atomic # 7 Polarization: -132.31 SS G_CDS: -7.52 Total: -139.83 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -0.11 Total: -52.31 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -77.95 -0.63 -78.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568244595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.972 kcal (2) G-P(sol) polarization free energy of solvation -77.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds