Wall clock time and date at job start Wed Apr 1 2020 05:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00355 * 2 1 4 4 H 1.48489 * 109.46995 * 269.99899 * 3 2 1 5 5 H 1.48496 * 109.47038 * 30.00074 * 3 2 1 6 6 H 1.48504 * 109.46930 * 150.00137 * 3 2 1 7 7 C 1.38952 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.37109 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99772 * 179.97438 * 9 7 2 11 11 O 1.21302 * 120.00093 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99906 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47186 * 173.69751 * 12 10 9 14 14 C 1.46108 * 111.00000 * 304.29962 * 13 12 10 15 15 C 1.53329 * 110.15356 * 223.67866 * 14 13 12 16 16 C 1.51687 * 112.02851 * 292.86191 * 15 14 13 17 17 H 1.08998 * 109.91962 * 176.70236 * 16 15 14 18 18 C 1.53008 * 111.62817 * 299.56108 * 16 15 14 19 19 C 1.53880 * 104.25228 * 89.51189 * 18 16 15 20 20 C 1.53265 * 105.21660 * 16.55313 * 19 18 16 21 21 H 1.08997 * 109.53721 * 120.92928 * 20 19 18 22 22 C 1.48676 * 110.99829 * 69.91268 * 13 12 10 23 23 N 1.47279 * 109.63644 * 0.49565 * 20 19 18 24 24 C 1.34768 * 127.36979 * 162.16971 * 23 20 19 25 25 O 1.21608 * 120.00189 * 1.21583 * 24 23 20 26 26 C 1.47425 * 120.00364 * 181.21721 * 24 23 20 27 27 C 1.41290 * 126.41239 * 350.91081 * 26 24 23 28 28 N 1.30449 * 108.02255 * 179.97438 * 27 26 24 29 29 N 1.39932 * 108.89937 * 359.97438 * 28 27 26 30 30 H 0.97001 * 125.76101 * 179.97438 * 29 28 27 31 31 C 1.34265 * 108.48908 * 359.75238 * 29 28 27 32 32 H 0.96995 * 120.00534 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99714 * 359.97438 * 9 7 2 34 34 H 1.08997 * 109.47124 * 293.69584 * 12 10 9 35 35 H 1.08997 * 109.47620 * 53.69717 * 12 10 9 36 36 H 1.08997 * 109.35586 * 343.88729 * 14 13 12 37 37 H 1.09000 * 109.35309 * 103.46558 * 14 13 12 38 38 H 1.08999 * 108.97107 * 172.20764 * 15 14 13 39 39 H 1.09000 * 108.90700 * 53.47073 * 15 14 13 40 40 H 1.08997 * 110.47519 * 208.20979 * 18 16 15 41 41 H 1.09001 * 110.47139 * 330.69209 * 18 16 15 42 42 H 1.09006 * 110.29656 * 257.61624 * 19 18 16 43 43 H 1.08994 * 110.29534 * 135.48595 * 19 18 16 44 44 H 1.08996 * 109.57004 * 295.82695 * 22 13 12 45 45 H 1.09003 * 109.57340 * 56.20795 * 22 13 12 46 46 H 1.08000 * 125.99080 * 359.94063 * 27 26 24 47 47 H 1.08002 * 126.28842 * 180.24138 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4458 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5580 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2434 -4.8630 0.0011 13 7 2.1907 -5.9755 -0.1510 14 6 3.0037 -5.8102 -1.3537 15 6 3.1180 -7.1438 -2.1015 16 6 3.9159 -8.1688 -1.3181 17 1 3.9263 -9.1187 -1.8524 18 6 5.3449 -7.6894 -1.0544 19 6 5.2498 -6.9315 0.2814 20 6 3.9181 -7.3713 0.8995 21 1 4.1012 -7.8313 1.8706 22 6 3.0202 -6.1400 1.0718 23 7 3.2546 -8.3387 0.0090 24 6 2.2620 -9.1939 0.3247 25 8 1.8036 -9.2043 1.4510 26 6 1.7318 -10.1168 -0.6954 27 6 2.0304 -10.1018 -2.0763 28 7 1.3684 -11.0726 -2.6429 29 7 0.6260 -11.7455 -1.6662 30 1 0.0457 -12.5074 -1.8200 31 6 0.8561 -11.1618 -0.4791 32 1 -0.4851 -0.8400 0.0004 33 1 0.3532 -2.3906 0.0005 34 1 0.7045 -4.9709 0.9423 35 1 0.5345 -4.8736 -0.8267 36 1 2.5392 -5.0696 -2.0048 37 1 3.9993 -5.4671 -1.0724 38 1 3.6070 -6.9717 -3.0603 39 1 2.1166 -7.5356 -2.2801 40 1 6.0214 -8.5392 -0.9635 41 1 5.6763 -7.0228 -1.8506 42 1 5.2484 -5.8556 0.1064 43 1 6.0786 -7.2083 0.9329 44 1 3.6387 -5.2541 1.2153 45 1 2.3718 -6.2790 1.9369 46 1 2.6906 -9.4079 -2.5754 47 1 0.4316 -11.4541 0.4699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569444489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:19 Heat of formation + Delta-G solvation = 42.154935 kcal Electronic energy + Delta-G solvation = -32177.687787 eV Core-core repulsion = 27977.128638 eV Total energy + Delta-G solvation = -4200.559148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66211 -40.56125 -38.65829 -37.64747 -35.36658 -33.98757 -33.16041 -32.19249 -31.39073 -31.16603 -30.17343 -28.79371 -26.12037 -25.70782 -24.02101 -23.70956 -22.38986 -21.32734 -20.96772 -20.15889 -19.34686 -19.30072 -18.04012 -17.89234 -16.73097 -16.29342 -15.81537 -15.67664 -15.08843 -15.06961 -14.74564 -14.64780 -14.25211 -14.05077 -13.81357 -13.69985 -13.56326 -13.46409 -13.22835 -12.76576 -12.51576 -12.24063 -11.87586 -11.73491 -11.53561 -11.32265 -11.31336 -11.23215 -11.05907 -10.82641 -10.67849 -10.50026 -10.25321 -10.04311 -9.99647 -9.88884 -9.72687 -9.55094 -9.07691 -9.01857 -8.38354 -8.06390 -7.50715 -6.78711 -3.92022 1.38392 2.02485 2.46498 3.06082 3.27028 3.32176 3.51112 3.54265 3.79780 4.20234 4.25073 4.29818 4.55232 4.61199 4.68441 4.83376 4.88131 4.96761 5.06059 5.12711 5.15917 5.21811 5.32503 5.38589 5.48968 5.51959 5.68556 5.81969 5.82626 5.86506 5.93199 5.99893 6.00760 6.04717 6.10465 6.16779 6.18021 6.28675 6.33139 6.56442 6.66179 6.82372 7.23899 7.36500 7.49976 7.76284 7.79748 8.04590 8.44344 8.55798 8.75553 9.44348 9.82518 10.64398 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.002815 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.744874 B = 9945.490298 C =10437.668327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.009 4.009 3 Si 1.093 2.907 4 H -0.285 1.285 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.383 4.383 8 H 0.098 0.902 9 N -0.571 5.571 10 C 0.411 3.589 11 O -0.591 6.591 12 C 0.044 3.956 13 N -0.506 5.506 14 C 0.065 3.935 15 C -0.135 4.135 16 C 0.122 3.878 17 H 0.089 0.911 18 C -0.124 4.124 19 C -0.132 4.132 20 C 0.142 3.858 21 H 0.080 0.920 22 C 0.038 3.962 23 N -0.583 5.583 24 C 0.623 3.377 25 O -0.554 6.554 26 C -0.277 4.277 27 C 0.069 3.931 28 N -0.299 5.299 29 N -0.467 5.467 30 H 0.443 0.557 31 C 0.126 3.874 32 H 0.262 0.738 33 H 0.376 0.624 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.202 0.798 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 -21.956 -3.755 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.212 4.212 3 Si 0.919 3.081 4 H -0.211 1.211 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.513 4.513 8 H 0.116 0.884 9 N -0.207 5.207 10 C 0.197 3.803 11 O -0.477 6.477 12 C -0.089 4.089 13 N -0.229 5.229 14 C -0.063 4.063 15 C -0.174 4.174 16 C 0.019 3.981 17 H 0.106 0.894 18 C -0.162 4.162 19 C -0.170 4.170 20 C 0.038 3.962 21 H 0.098 0.902 22 C -0.090 4.090 23 N -0.315 5.315 24 C 0.413 3.587 25 O -0.434 6.434 26 C -0.291 4.291 27 C -0.118 4.118 28 N -0.121 5.121 29 N -0.172 5.172 30 H 0.287 0.713 31 C -0.026 4.026 32 H 0.074 0.926 33 H 0.209 0.791 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.218 0.782 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.750 -21.371 -4.285 22.308 hybrid contribution -0.299 -0.795 0.730 1.120 sum 4.451 -22.166 -3.555 22.886 Atomic orbital electron populations 1.70864 1.06554 1.29544 1.46833 1.26516 0.96538 1.02709 0.95419 0.83102 0.74380 0.73491 0.77136 1.21110 1.20606 1.20970 1.20563 0.94624 0.84014 1.52051 0.88378 1.42122 1.08280 1.05893 1.64450 1.21023 0.88930 0.85693 0.84640 1.90458 1.13738 1.87054 1.56441 1.22122 0.95610 0.88130 1.02996 1.62174 1.18958 1.39113 1.02627 1.21883 0.98772 0.94313 0.91348 1.22010 1.00606 0.96714 0.98068 1.22022 0.92253 0.98687 0.85182 0.89377 1.22140 0.95169 1.00464 0.98464 1.22506 0.96022 1.02082 0.96357 1.21462 0.91586 0.89052 0.94101 0.90230 1.23115 0.96437 0.97023 0.92424 1.48389 1.35413 1.36517 1.11187 1.16488 0.77684 0.78333 0.86151 1.90755 1.59229 1.71197 1.22172 1.20273 1.10248 1.04128 0.94500 1.24858 0.97859 0.96242 0.92837 1.77172 1.10915 1.10335 1.13643 1.46224 1.37788 1.28038 1.05143 0.71281 1.23002 0.95447 0.92872 0.91293 0.92627 0.79119 0.89681 0.89752 0.92142 0.91327 0.91008 0.91084 0.90949 0.89660 0.88967 0.90799 0.90666 0.91378 0.78198 0.79306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.17 13.68 55.50 0.76 -24.41 16 2 C -0.01 -0.24 5.50 -17.47 -0.10 -0.34 16 3 Si 1.09 24.17 29.92 -169.99 -5.09 19.09 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.38 -10.59 9.68 -14.93 -0.14 -10.74 16 8 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 9 N -0.57 -14.15 5.28 -10.96 -0.06 -14.20 16 10 C 0.41 9.31 6.90 -10.99 -0.08 9.23 16 11 O -0.59 -14.65 12.07 5.54 0.07 -14.58 16 12 C 0.04 0.79 5.66 -4.98 -0.03 0.76 16 13 N -0.51 -8.38 4.03 -234.75 -0.95 -9.32 16 14 C 0.07 1.01 3.80 -4.08 -0.02 0.99 16 15 C -0.14 -1.55 4.63 -27.23 -0.13 -1.68 16 16 C 0.12 1.26 2.64 -67.07 -0.18 1.09 16 17 H 0.09 0.76 4.99 -51.93 -0.26 0.50 16 18 C -0.12 -1.16 6.13 -26.27 -0.16 -1.32 16 19 C -0.13 -1.51 5.74 -26.14 -0.15 -1.66 16 20 C 0.14 1.95 3.19 -67.18 -0.21 1.73 16 21 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 22 C 0.04 0.63 4.89 -2.65 -0.01 0.62 16 23 N -0.58 -7.64 2.07 -157.53 -0.33 -7.96 16 24 C 0.62 9.10 7.88 -12.52 -0.10 9.00 16 25 O -0.55 -9.87 17.33 5.27 0.09 -9.78 16 26 C -0.28 -3.30 6.07 -105.07 -0.64 -3.94 16 27 C 0.07 0.74 9.63 -16.98 -0.16 0.58 16 28 N -0.30 -3.21 12.63 30.86 0.39 -2.82 16 29 N -0.47 -3.72 7.29 30.85 0.22 -3.50 16 30 H 0.44 1.87 8.96 -182.72 -1.64 0.24 16 31 C 0.13 1.17 11.84 -16.56 -0.20 0.97 16 32 H 0.26 7.09 6.77 -40.82 -0.28 6.81 16 33 H 0.38 8.78 6.73 -40.82 -0.27 8.50 16 34 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.06 1.05 7.22 -51.93 -0.37 0.68 16 37 H 0.07 1.14 4.15 -51.93 -0.22 0.93 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.86 6.83 -51.93 -0.35 0.51 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.74 7.95 -51.93 -0.41 0.33 16 42 H 0.09 1.26 5.67 -51.93 -0.29 0.97 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.42 5.37 -51.93 -0.28 1.14 16 45 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 46 H 0.20 1.82 3.84 -52.49 -0.20 1.62 16 47 H 0.19 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -35.14 360.33 -8.88 -44.02 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -7.13 Total: 12.73 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.30 Total: 5.31 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.04 Total: -62.22 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.16 Total: -24.36 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.09 Total: 19.09 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.14 -8.88 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569444489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.178 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds