Wall clock time and date at job start Wed Apr 1 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00355 * 2 1 4 4 H 1.48489 * 109.46995 * 269.99899 * 3 2 1 5 5 H 1.48496 * 109.47038 * 30.00074 * 3 2 1 6 6 H 1.48504 * 109.46930 * 150.00137 * 3 2 1 7 7 C 1.38952 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.37109 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99772 * 179.97438 * 9 7 2 11 11 O 1.21302 * 120.00093 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99906 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47186 * 173.69751 * 12 10 9 14 14 C 1.46108 * 111.00000 * 304.29962 * 13 12 10 15 15 C 1.53329 * 110.15356 * 223.67866 * 14 13 12 16 16 C 1.51687 * 112.02851 * 292.86191 * 15 14 13 17 17 H 1.08998 * 109.91962 * 176.70236 * 16 15 14 18 18 C 1.53008 * 111.62817 * 299.56108 * 16 15 14 19 19 C 1.53880 * 104.25228 * 89.51189 * 18 16 15 20 20 C 1.53265 * 105.21660 * 16.55313 * 19 18 16 21 21 H 1.08997 * 109.53721 * 120.92928 * 20 19 18 22 22 C 1.48676 * 110.99829 * 69.91268 * 13 12 10 23 23 N 1.47279 * 109.63644 * 0.49565 * 20 19 18 24 24 C 1.34768 * 127.36979 * 162.16971 * 23 20 19 25 25 O 1.21608 * 120.00189 * 1.21583 * 24 23 20 26 26 C 1.47425 * 120.00364 * 181.21721 * 24 23 20 27 27 C 1.41290 * 126.41239 * 350.91081 * 26 24 23 28 28 N 1.30449 * 108.02255 * 179.97438 * 27 26 24 29 29 N 1.39932 * 108.89937 * 359.97438 * 28 27 26 30 30 H 0.97001 * 125.76101 * 179.97438 * 29 28 27 31 31 C 1.34265 * 108.48908 * 359.75238 * 29 28 27 32 32 H 0.96995 * 120.00534 * 180.02562 * 1 2 3 33 33 H 0.96997 * 119.99714 * 359.97438 * 9 7 2 34 34 H 1.08997 * 109.47124 * 293.69584 * 12 10 9 35 35 H 1.08997 * 109.47620 * 53.69717 * 12 10 9 36 36 H 1.08997 * 109.35586 * 343.88729 * 14 13 12 37 37 H 1.09000 * 109.35309 * 103.46558 * 14 13 12 38 38 H 1.08999 * 108.97107 * 172.20764 * 15 14 13 39 39 H 1.09000 * 108.90700 * 53.47073 * 15 14 13 40 40 H 1.08997 * 110.47519 * 208.20979 * 18 16 15 41 41 H 1.09001 * 110.47139 * 330.69209 * 18 16 15 42 42 H 1.09006 * 110.29656 * 257.61624 * 19 18 16 43 43 H 1.08994 * 110.29534 * 135.48595 * 19 18 16 44 44 H 1.08996 * 109.57004 * 295.82695 * 22 13 12 45 45 H 1.09003 * 109.57340 * 56.20795 * 22 13 12 46 46 H 1.08000 * 125.99080 * 359.94063 * 27 26 24 47 47 H 1.08002 * 126.28842 * 180.24138 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4458 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5580 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2434 -4.8630 0.0011 13 7 2.1907 -5.9755 -0.1510 14 6 3.0037 -5.8102 -1.3537 15 6 3.1180 -7.1438 -2.1015 16 6 3.9159 -8.1688 -1.3181 17 1 3.9263 -9.1187 -1.8524 18 6 5.3449 -7.6894 -1.0544 19 6 5.2498 -6.9315 0.2814 20 6 3.9181 -7.3713 0.8995 21 1 4.1012 -7.8313 1.8706 22 6 3.0202 -6.1400 1.0718 23 7 3.2546 -8.3387 0.0090 24 6 2.2620 -9.1939 0.3247 25 8 1.8036 -9.2043 1.4510 26 6 1.7318 -10.1168 -0.6954 27 6 2.0304 -10.1018 -2.0763 28 7 1.3684 -11.0726 -2.6429 29 7 0.6260 -11.7455 -1.6662 30 1 0.0457 -12.5074 -1.8200 31 6 0.8561 -11.1618 -0.4791 32 1 -0.4851 -0.8400 0.0004 33 1 0.3532 -2.3906 0.0005 34 1 0.7045 -4.9709 0.9423 35 1 0.5345 -4.8736 -0.8267 36 1 2.5392 -5.0696 -2.0048 37 1 3.9993 -5.4671 -1.0724 38 1 3.6070 -6.9717 -3.0603 39 1 2.1166 -7.5356 -2.2801 40 1 6.0214 -8.5392 -0.9635 41 1 5.6763 -7.0228 -1.8506 42 1 5.2484 -5.8556 0.1064 43 1 6.0786 -7.2083 0.9329 44 1 3.6387 -5.2541 1.2153 45 1 2.3718 -6.2790 1.9369 46 1 2.6906 -9.4079 -2.5754 47 1 0.4316 -11.4541 0.4699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569444489.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:18 Heat of formation + Delta-G solvation = 15.582578 kcal Electronic energy + Delta-G solvation = -32178.840050 eV Core-core repulsion = 27977.128638 eV Total energy + Delta-G solvation = -4201.711412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.50924 -41.63646 -40.33312 -38.85974 -36.95859 -35.81055 -34.16595 -33.23303 -33.10806 -32.23544 -30.99906 -30.16218 -27.30414 -27.24032 -25.69366 -24.74618 -23.28615 -22.35652 -22.01229 -21.49793 -20.85691 -20.19113 -19.93376 -18.94196 -18.11682 -17.71770 -17.03196 -16.74327 -16.62535 -16.01179 -15.93659 -15.84475 -15.58402 -15.49520 -15.41153 -15.03395 -14.78684 -14.54339 -14.39898 -13.72366 -13.61074 -13.56944 -13.35695 -13.02758 -12.95763 -12.79224 -12.56528 -12.40658 -12.24627 -12.06833 -11.96798 -11.90528 -11.70112 -11.63299 -11.44532 -11.02412 -10.87812 -10.82394 -10.77036 -10.11564 -9.90004 -9.42030 -9.08130 -8.93068 -6.08232 0.60985 1.18422 1.48978 1.52334 1.79228 1.80287 1.96487 2.10810 2.40257 2.54110 2.91704 3.04978 3.15310 3.41066 3.65381 3.78878 3.92898 3.95584 3.96940 4.08523 4.15765 4.16576 4.22886 4.32021 4.39842 4.43451 4.49312 4.52378 4.58487 4.74519 4.85812 4.88359 4.94872 5.00300 5.01619 5.09016 5.18324 5.25076 5.34756 5.47468 5.55048 5.58883 5.91408 5.96630 6.14762 6.24878 6.51798 6.54039 6.72131 6.77804 7.37401 7.42163 7.87717 8.52663 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.002815 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.744874 B = 9945.490298 C =10437.668327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.044 4.044 3 Si 1.135 2.865 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.406 4.406 8 H 0.075 0.925 9 N -0.586 5.586 10 C 0.418 3.582 11 O -0.611 6.611 12 C 0.052 3.948 13 N -0.498 5.498 14 C 0.066 3.934 15 C -0.127 4.127 16 C 0.122 3.878 17 H 0.117 0.883 18 C -0.117 4.117 19 C -0.127 4.127 20 C 0.143 3.857 21 H 0.074 0.926 22 C 0.043 3.957 23 N -0.584 5.584 24 C 0.618 3.382 25 O -0.598 6.598 26 C -0.308 4.308 27 C 0.074 3.926 28 N -0.318 5.318 29 N -0.449 5.449 30 H 0.460 0.540 31 C 0.142 3.858 32 H 0.259 0.741 33 H 0.382 0.618 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.050 0.950 46 H 0.214 0.786 47 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -23.959 -5.280 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.242 4.242 3 Si 0.955 3.045 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.535 4.535 8 H 0.093 0.907 9 N -0.224 5.224 10 C 0.204 3.796 11 O -0.498 6.498 12 C -0.081 4.081 13 N -0.221 5.221 14 C -0.062 4.062 15 C -0.165 4.165 16 C 0.020 3.980 17 H 0.134 0.866 18 C -0.155 4.155 19 C -0.165 4.165 20 C 0.039 3.961 21 H 0.093 0.907 22 C -0.085 4.085 23 N -0.314 5.314 24 C 0.410 3.590 25 O -0.481 6.481 26 C -0.323 4.323 27 C -0.113 4.113 28 N -0.139 5.139 29 N -0.156 5.156 30 H 0.308 0.692 31 C -0.012 4.012 32 H 0.069 0.931 33 H 0.215 0.785 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.230 0.770 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.368 -23.429 -5.864 24.741 hybrid contribution -0.507 -0.297 1.234 1.367 sum 4.862 -23.726 -4.629 24.658 Atomic orbital electron populations 1.70938 1.07107 1.29500 1.48213 1.27832 0.96661 1.05465 0.94265 0.82598 0.73626 0.70204 0.78051 1.19488 1.19952 1.20205 1.20533 0.93845 0.85635 1.53495 0.90732 1.42197 1.08570 1.05860 1.65815 1.21942 0.88911 0.86585 0.82119 1.90451 1.15100 1.87683 1.56532 1.22161 0.95889 0.85932 1.04098 1.62352 1.19112 1.37483 1.03131 1.21926 0.97401 0.96390 0.90529 1.21966 1.01281 0.94449 0.98848 1.22230 0.92340 0.99586 0.83868 0.86594 1.22199 0.94921 1.01232 0.97177 1.22404 0.95181 1.00687 0.98182 1.21405 0.92059 0.87915 0.94757 0.90742 1.23021 0.96071 0.97539 0.91909 1.48480 1.35127 1.35707 1.12093 1.16929 0.77401 0.78523 0.86129 1.90723 1.60726 1.72591 1.24031 1.20206 1.12330 1.05220 0.94525 1.24978 0.97869 0.96308 0.92193 1.77139 1.11531 1.10719 1.14531 1.46238 1.37082 1.27946 1.04313 0.69233 1.23335 0.93936 0.91671 0.92260 0.93050 0.78463 0.88967 0.87928 0.94419 0.92612 0.88039 0.91289 0.88358 0.88491 0.91619 0.88914 0.93436 0.93095 0.77043 0.77178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.92 13.68 21.66 0.30 -51.62 16 2 C -0.04 -2.41 5.50 84.93 0.47 -1.94 16 3 Si 1.14 48.73 29.92 68.60 2.05 50.78 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.41 -23.07 9.68 84.04 0.81 -22.26 16 8 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 9 N -0.59 -29.94 5.28 -306.97 -1.62 -31.56 16 10 C 0.42 19.49 6.90 87.66 0.60 20.09 16 11 O -0.61 -31.45 12.07 -3.10 -0.04 -31.49 16 12 C 0.05 1.90 5.66 85.55 0.48 2.38 16 13 N -0.50 -16.68 4.03 -896.61 -3.62 -20.30 16 14 C 0.07 2.01 3.80 86.56 0.33 2.34 16 15 C -0.13 -2.63 4.63 30.27 0.14 -2.49 16 16 C 0.12 2.20 2.64 44.03 0.12 2.32 16 17 H 0.12 1.55 4.99 -2.39 -0.01 1.54 16 18 C -0.12 -1.85 6.13 30.89 0.19 -1.66 16 19 C -0.13 -2.79 5.74 30.98 0.18 -2.61 16 20 C 0.14 3.93 3.19 45.06 0.14 4.07 16 21 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 22 C 0.04 1.49 4.89 86.08 0.42 1.91 16 23 N -0.58 -14.60 2.07 -770.57 -1.59 -16.19 16 24 C 0.62 17.48 7.88 86.66 0.68 18.17 16 25 O -0.60 -21.37 17.33 -4.06 -0.07 -21.44 16 26 C -0.31 -6.73 6.07 -20.15 -0.12 -6.85 16 27 C 0.07 1.37 9.63 85.65 0.83 2.20 16 28 N -0.32 -5.91 12.63 -56.27 -0.71 -6.62 16 29 N -0.45 -5.88 7.29 -56.31 -0.41 -6.29 16 30 H 0.46 2.50 8.96 -213.43 -1.91 0.58 16 31 C 0.14 2.28 11.84 84.27 1.00 3.28 16 32 H 0.26 14.24 6.77 -92.71 -0.63 13.61 16 33 H 0.38 18.36 6.73 -92.71 -0.62 17.73 16 34 H 0.09 3.29 8.04 -2.39 -0.02 3.27 16 35 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.04 1.32 7.22 -2.39 -0.02 1.30 16 37 H 0.06 1.88 4.15 -2.39 -0.01 1.87 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.51 6.83 -2.39 -0.02 1.49 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.36 7.95 -2.39 -0.02 1.35 16 42 H 0.07 1.83 5.67 -2.38 -0.01 1.82 16 43 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.05 1.90 5.37 -2.39 -0.01 1.88 16 45 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 46 H 0.21 3.15 3.84 -2.91 -0.01 3.14 16 47 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -78.54 360.33 -0.78 -79.32 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -1.34 Total: 36.47 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 6.27 Total: 18.95 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -7.66 Total: -132.58 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.11 Total: -52.93 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.05 Total: 50.78 kcal Total: -78.54 -0.78 -79.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569444489.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.898 kcal (2) G-P(sol) polarization free energy of solvation -78.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds