Wall clock time and date at job start Wed Apr 1 2020 04:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99587 * 2 1 4 4 H 1.48504 * 109.47104 * 239.99899 * 3 2 1 5 5 H 1.48496 * 109.47638 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47155 * 120.00052 * 3 2 1 7 7 C 1.37876 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47047 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47077 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99573 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.46622 * 179.97438 * 13 12 11 15 15 H 1.08995 * 109.47152 * 60.00028 * 14 13 12 16 16 O 1.42902 * 109.47100 * 299.99975 * 14 13 12 17 17 C 1.53004 * 109.46689 * 180.02562 * 14 13 12 18 18 O 1.42905 * 109.46988 * 185.00069 * 17 14 13 19 19 C 1.35834 * 117.00125 * 179.97438 * 18 17 14 20 20 C 1.38587 * 120.11681 * 359.72780 * 19 18 17 21 21 C 1.38177 * 120.06101 * 179.76530 * 20 19 18 22 22 C 1.38384 * 120.29355 * 0.50752 * 21 20 19 23 23 C 1.38008 * 120.23448 * 359.74621 * 22 21 20 24 24 C 1.39268 * 119.93632 * 359.97438 * 23 22 21 25 25 C 1.48399 * 120.14586 * 180.02562 * 24 23 22 26 26 N 1.34069 * 126.67669 * 179.66800 * 25 24 23 27 27 N 1.28982 * 107.26388 * 179.83677 * 26 25 24 28 28 N 1.28732 * 108.95290 * 0.43179 * 27 26 25 29 29 H 0.96997 * 125.33966 * 179.72899 * 28 27 26 30 30 N 1.28873 * 109.31862 * 359.72350 * 28 27 26 31 31 H 0.96998 * 120.00461 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.46938 * 60.00224 * 9 7 2 33 33 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 34 34 H 1.08995 * 109.47786 * 59.99623 * 10 9 7 35 35 H 1.09008 * 109.46885 * 300.00116 * 10 9 7 36 36 H 1.09002 * 109.47142 * 60.00048 * 11 10 9 37 37 H 1.09000 * 109.46991 * 299.99792 * 11 10 9 38 38 H 1.00896 * 111.00309 * 56.04370 * 12 11 10 39 39 H 1.08990 * 109.47358 * 299.99539 * 13 12 11 40 40 H 1.09004 * 109.47457 * 60.00221 * 13 12 11 41 41 H 0.96703 * 114.00039 * 299.99952 * 16 14 13 42 42 H 1.09000 * 109.46945 * 304.99439 * 17 14 13 43 43 H 1.08998 * 109.47126 * 65.00106 * 17 14 13 44 44 H 1.08003 * 119.97355 * 359.97438 * 20 19 18 45 45 H 1.08003 * 119.85544 * 180.22835 * 21 20 19 46 46 H 1.08001 * 119.88081 * 179.76319 * 22 21 20 47 47 H 1.08001 * 120.03273 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0018 13 6 1.7348 -7.3949 0.0018 14 6 2.7599 -8.5309 0.0018 15 1 3.3847 -8.4564 0.8918 16 8 3.5791 -8.4332 -1.1650 17 6 2.0305 -9.8759 0.0012 18 8 2.9832 -10.9345 0.1186 19 6 2.4971 -12.2028 0.1342 20 6 1.1322 -12.4255 0.0442 21 6 0.6394 -13.7163 0.0552 22 6 1.5026 -14.7922 0.1665 23 6 2.8635 -14.5842 0.2621 24 6 3.3713 -13.2875 0.2461 25 6 4.8339 -13.0585 0.3480 26 7 5.4615 -11.8738 0.3397 27 7 6.7247 -12.1090 0.4520 28 7 6.9087 -13.3813 0.5202 29 1 7.7697 -13.8199 0.6046 30 7 5.7695 -13.9807 0.4587 31 1 -0.4851 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8903 34 1 2.8714 -3.6039 0.8922 35 1 2.8727 -3.6046 -0.8878 36 1 0.8548 -5.0449 -0.8895 37 1 0.8528 -5.0446 0.8905 38 1 3.0695 -6.0366 0.7836 39 1 1.1097 -7.4692 0.8915 40 1 1.1102 -7.4696 -0.8884 41 1 3.0883 -8.4917 -1.9962 42 1 1.3389 -9.9145 0.8428 43 1 1.4758 -9.9880 -0.9304 44 1 0.4534 -11.5895 -0.0380 45 1 -0.4246 -13.8862 -0.0188 46 1 1.1098 -15.7982 0.1783 47 1 3.5343 -15.4263 0.3484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:50 Heat of formation + Delta-G solvation = 55.185854 kcal Electronic energy + Delta-G solvation = -28729.195745 eV Core-core repulsion = 24529.201659 eV Total energy + Delta-G solvation = -4199.994085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.61289 -40.60549 -38.50773 -37.22435 -35.64034 -34.60070 -33.86465 -33.40732 -31.65034 -31.01495 -30.69752 -29.52527 -26.78536 -25.21927 -24.72681 -24.47350 -22.57753 -22.16204 -21.98191 -21.47292 -20.04890 -19.53142 -18.41918 -17.33515 -17.11148 -16.84338 -16.55249 -16.27871 -15.73240 -15.43074 -15.14478 -14.67058 -14.57927 -14.49959 -14.38947 -13.99142 -13.74108 -13.39510 -13.30845 -12.90835 -12.51559 -12.44078 -12.06237 -12.00858 -11.73136 -11.61387 -11.53332 -11.38214 -11.33433 -11.24009 -11.23588 -10.89875 -10.79291 -10.54716 -10.54308 -10.07599 -9.66069 -9.29942 -9.29239 -9.03406 -8.53895 -8.31017 -8.16065 -5.96445 -3.98318 0.35740 0.94694 1.02055 2.01722 2.11099 2.69590 3.35942 3.36848 3.40509 3.43269 3.43829 3.93473 4.14340 4.32657 4.43022 4.49374 4.52918 4.65370 4.70620 4.83927 4.87763 4.93823 5.02320 5.08276 5.16019 5.17366 5.30797 5.39316 5.43719 5.50764 5.77560 5.78593 5.85225 5.87696 5.94771 6.00809 6.15513 6.25846 6.32983 6.74118 6.77129 7.00486 7.16805 7.31363 7.57880 7.71509 7.72579 7.86599 7.99921 8.03974 8.47614 9.08666 9.65506 11.14962 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.001568 C = 0.001456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.164822 B =17852.931413 C =19232.687868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.679 5.679 13 C 0.030 3.970 14 C 0.118 3.882 15 H 0.107 0.893 16 O -0.532 6.532 17 C 0.023 3.977 18 O -0.273 6.273 19 C 0.173 3.827 20 C -0.216 4.216 21 C -0.057 4.057 22 C -0.165 4.165 23 C -0.042 4.042 24 C -0.057 4.057 25 C 0.222 3.778 26 N -0.235 5.235 27 N -0.053 5.053 28 N -0.234 5.234 29 H 0.473 0.527 30 N -0.303 5.303 31 H 0.260 0.740 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.341 0.659 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.370 0.630 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 -36.889 1.015 37.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.310 5.310 13 C -0.101 4.101 14 C 0.057 3.943 15 H 0.125 0.875 16 O -0.335 6.335 17 C -0.053 4.053 18 O -0.183 6.183 19 C 0.124 3.876 20 C -0.235 4.235 21 C -0.076 4.076 22 C -0.184 4.184 23 C -0.062 4.062 24 C -0.061 4.061 25 C -0.058 4.058 26 N -0.108 5.108 27 N -0.048 5.048 28 N -0.079 5.079 29 H 0.327 0.673 30 N -0.156 5.156 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.031 0.969 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.159 0.841 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.216 0.784 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.849 -36.211 0.812 36.690 hybrid contribution -0.576 0.295 0.598 0.882 sum 5.273 -35.916 1.411 36.329 Atomic orbital electron populations 1.69954 1.06055 1.26638 1.51038 1.25029 0.94859 0.99260 0.95390 0.86646 0.79558 0.83080 0.78646 1.20211 1.21343 1.20272 1.21233 0.93076 0.91061 1.50360 0.92671 1.19062 0.94011 0.91408 0.97061 1.21624 0.99187 0.92824 1.00905 1.22151 0.94043 0.90868 0.99795 1.60413 1.19933 1.00453 1.50249 1.22527 0.95562 0.90625 1.01344 1.21842 0.92506 0.88721 0.91200 0.87510 1.86715 1.36180 1.95752 1.14893 1.23734 0.92122 0.87457 1.01998 1.86399 1.34748 1.11083 1.86105 1.18956 0.91453 0.84646 0.92556 1.21250 0.93513 0.98964 1.09771 1.21146 1.00202 0.91738 0.94468 1.20983 0.92690 0.99516 1.05176 1.21016 0.95823 0.94551 0.94793 1.16520 0.84692 0.92302 1.12567 1.23418 0.95311 0.85284 1.01748 1.76418 0.96065 1.22476 1.15843 1.79040 1.13176 0.98095 1.14511 1.47733 1.09425 1.04394 1.46335 0.67309 1.74841 0.91839 1.26027 1.22856 0.93021 0.96595 0.96853 0.93586 0.92418 0.91530 0.95833 0.84141 0.94520 0.90624 0.78360 0.91028 0.91356 0.84614 0.85185 0.85104 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16 11 C 0.06 1.03 5.69 -3.82 -0.02 1.00 16 12 N -0.68 -9.87 6.37 -113.77 -0.72 -10.60 16 13 C 0.03 0.33 5.35 -3.82 -0.02 0.30 16 14 C 0.12 1.23 3.46 -26.72 -0.09 1.14 16 15 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 16 O -0.53 -6.67 13.17 -40.10 -0.53 -7.20 16 17 C 0.02 0.19 4.37 37.16 0.16 0.36 16 18 O -0.27 -3.01 8.45 -24.09 -0.20 -3.22 16 19 C 0.17 1.69 6.69 -38.88 -0.26 1.43 16 20 C -0.22 -1.58 9.03 -39.47 -0.36 -1.93 16 21 C -0.06 -0.33 10.03 -39.55 -0.40 -0.73 16 22 C -0.17 -0.96 10.03 -39.61 -0.40 -1.36 16 23 C -0.04 -0.31 9.70 -39.28 -0.38 -0.69 16 24 C -0.06 -0.56 5.89 -104.76 -0.62 -1.18 16 25 C 0.22 2.50 7.91 -156.30 -1.24 1.27 16 26 N -0.24 -3.08 11.06 32.15 0.36 -2.72 16 27 N -0.05 -0.58 13.47 60.35 0.81 0.23 16 28 N -0.23 -1.72 7.90 60.35 0.48 -1.25 16 29 H 0.47 1.10 8.96 -340.36 -3.05 -1.95 16 30 N -0.30 -2.78 12.08 32.16 0.39 -2.40 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.34 4.83 8.73 -39.29 -0.34 4.49 16 39 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.37 3.46 9.05 45.56 0.41 3.87 16 42 H 0.07 0.49 7.65 -51.93 -0.40 0.09 16 43 H 0.07 0.46 7.68 -51.93 -0.40 0.06 16 44 H 0.14 0.76 6.30 -52.48 -0.33 0.43 16 45 H 0.13 0.45 8.06 -52.48 -0.42 0.02 16 46 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 47 H 0.14 0.81 7.88 -52.49 -0.41 0.40 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -36.50 401.42 -10.68 -47.18 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.71 Total: -0.38 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -4.31 Total: -16.17 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 2.05 Total: -43.29 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.73 Total: -10.42 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.50 -10.68 -47.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.366 kcal (2) G-P(sol) polarization free energy of solvation -36.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds