Wall clock time and date at job start Wed Apr 1 2020 04:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46500 * 114.16958 * 139.67037 * 15 14 13 17 17 C 1.34775 * 120.00092 * 111.15664 * 16 15 14 18 18 O 1.21568 * 119.99826 * 0.02562 * 17 16 15 19 19 C 1.47708 * 120.00328 * 179.97438 * 17 16 15 20 20 N 1.32208 * 126.67719 * 359.69255 * 19 17 16 21 21 N 1.28845 * 110.15401 * 179.83692 * 20 19 17 22 22 H 0.96999 * 124.98123 * 180.02562 * 21 20 19 23 23 C 1.34320 * 110.03829 * 0.36605 * 21 20 19 24 24 C 1.35588 * 107.21604 * 359.85049 * 23 21 20 25 25 C 1.50373 * 124.61651 * 179.79263 * 24 23 21 26 26 C 1.53470 * 108.28878 * 343.74626 * 25 24 23 27 27 C 1.53112 * 109.50681 * 49.48661 * 26 25 24 28 28 C 1.50703 * 128.90292 * 179.88648 * 23 21 20 29 29 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 30 30 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 35 35 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 36 36 H 1.08999 * 114.16922 * 272.37539 * 15 14 13 37 37 H 0.97003 * 120.00179 * 291.16008 * 16 15 14 38 38 H 1.09001 * 109.70368 * 103.45595 * 25 24 23 39 39 H 1.09004 * 109.69447 * 224.05035 * 25 24 23 40 40 H 1.08999 * 109.46902 * 289.47647 * 26 25 24 41 41 H 1.08998 * 109.46227 * 169.49199 * 26 25 24 42 42 H 1.09003 * 109.43995 * 169.89333 * 27 26 25 43 43 H 1.08999 * 109.40994 * 49.99256 * 27 26 25 44 44 H 1.09000 * 109.69421 * 283.02415 * 28 23 21 45 45 H 1.08998 * 109.69544 * 43.60330 * 28 23 21 46 46 H 1.08994 * 113.48196 * 253.46980 * 29 13 12 47 47 H 1.09003 * 113.47819 * 23.94188 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 7 6.0507 -3.7551 0.0026 14 6 6.3171 -4.2212 1.3762 15 6 7.5910 -4.8911 0.8424 16 7 8.7504 -4.7677 1.7294 17 6 9.2370 -5.8562 2.3578 18 8 8.7140 -6.9405 2.1882 19 6 10.4063 -5.7320 3.2517 20 7 11.0775 -4.6262 3.5248 21 7 12.0374 -4.8809 4.3458 22 1 12.6640 -4.2250 4.6894 23 6 12.0477 -6.1891 4.6502 24 6 11.0253 -6.7669 3.9725 25 6 10.6830 -8.2301 4.0273 26 6 11.8841 -8.9840 4.6143 27 6 12.3421 -8.2929 5.9015 28 6 12.9830 -6.9414 5.5614 29 6 7.5054 -3.8013 -0.2354 30 1 -0.4850 0.8400 -0.0004 31 1 3.8649 -0.3630 0.0007 32 1 5.9249 -1.8559 -0.8873 33 1 5.9236 -1.8566 0.8927 34 1 6.5140 -3.4115 2.0790 35 1 5.5759 -4.9298 1.7457 36 1 7.4393 -5.9031 0.4670 37 1 9.1679 -3.9026 1.8645 38 1 9.8094 -8.3797 4.6618 39 1 10.4747 -8.5966 3.0221 40 1 12.7006 -8.9849 3.8923 41 1 11.5947 -10.0111 4.8367 42 1 13.0714 -8.9224 6.4115 43 1 11.4825 -8.1334 6.5526 44 1 13.9358 -7.1033 5.0573 45 1 13.1433 -6.3704 6.4759 46 1 7.7715 -4.1542 -1.2317 47 1 8.0195 -2.8796 0.0372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665156883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:13 Heat of formation + Delta-G solvation = 40.832654 kcal Electronic energy + Delta-G solvation = -29340.018462 eV Core-core repulsion = 25139.401975 eV Total energy + Delta-G solvation = -4200.616487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.23497 -40.58170 -38.96257 -37.82721 -37.35755 -34.22044 -33.82525 -33.01266 -31.64219 -30.38204 -30.34630 -29.56495 -25.98264 -25.89997 -24.49885 -24.19200 -22.99982 -22.51954 -20.55535 -20.01354 -19.46464 -19.33037 -18.36931 -18.17021 -17.19293 -16.55941 -16.36478 -16.10594 -15.32673 -15.21062 -14.88681 -14.88427 -14.56212 -14.36963 -14.11338 -14.09025 -13.63036 -13.52793 -13.40206 -13.22403 -12.83052 -12.65211 -12.53256 -12.40873 -12.15283 -11.64444 -11.43305 -11.30229 -11.23959 -11.16985 -11.14276 -11.04816 -10.68945 -10.57696 -10.25911 -9.94127 -9.72570 -9.52742 -9.15686 -9.00355 -8.89746 -8.30986 -8.13702 -6.27177 -3.78417 1.22743 1.70243 2.37526 2.91503 3.03655 3.08300 3.16306 3.17210 3.77922 3.93916 4.06860 4.10755 4.13094 4.33346 4.38500 4.40601 4.70923 4.76953 4.80643 4.82692 4.89708 4.99352 5.10246 5.13792 5.16324 5.27081 5.30422 5.43309 5.47885 5.52455 5.54215 5.61897 5.64108 5.70277 5.84818 5.89915 5.92705 5.95592 6.05431 6.15056 6.31462 6.43220 6.56684 7.03810 7.23124 7.51946 7.62051 8.02701 8.18546 8.64717 8.99789 9.46557 9.88759 10.86177 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.001741 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.882165 B =16078.403132 C =16515.815992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.040 3.960 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.303 4.303 8 H 0.120 0.880 9 N -0.595 5.595 10 C 0.456 3.544 11 O -0.554 6.554 12 C 0.008 3.992 13 N -0.434 5.434 14 C -0.009 4.009 15 C 0.119 3.881 16 N -0.707 5.707 17 C 0.606 3.394 18 O -0.523 6.523 19 C -0.005 4.005 20 N -0.263 5.263 21 N -0.373 5.373 22 H 0.445 0.555 23 C 0.009 3.991 24 C -0.140 4.140 25 C -0.045 4.045 26 C -0.122 4.122 27 C -0.116 4.116 28 C -0.048 4.048 29 C -0.013 4.013 30 H 0.273 0.727 31 H 0.369 0.631 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.406 0.594 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.501 -10.054 11.610 36.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.235 5.235 10 C 0.241 3.759 11 O -0.434 6.434 12 C -0.124 4.124 13 N -0.156 5.156 14 C -0.140 4.140 15 C 0.014 3.986 16 N -0.358 5.358 17 C 0.390 3.610 18 O -0.397 6.397 19 C -0.165 4.165 20 N -0.099 5.099 21 N -0.086 5.086 22 H 0.289 0.711 23 C -0.118 4.118 24 C -0.150 4.150 25 C -0.083 4.083 26 C -0.159 4.159 27 C -0.154 4.154 28 C -0.086 4.086 29 C -0.143 4.143 30 H 0.083 0.917 31 H 0.202 0.798 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.151 0.849 37 H 0.241 0.759 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 31.967 -10.660 10.755 35.372 hybrid contribution 1.586 2.378 0.957 3.014 sum 33.552 -8.281 11.712 36.490 Atomic orbital electron populations 1.69621 1.05602 1.27392 1.49703 1.25026 0.95485 0.97899 0.97822 0.86671 0.79704 0.84140 0.78833 1.19646 1.20237 1.19630 1.19433 0.79238 0.96631 1.47862 0.86288 1.42211 1.07507 1.06052 1.67720 1.19550 0.87832 0.84589 0.83963 1.90578 1.69208 1.30878 1.52746 1.22541 0.96747 0.91008 1.02150 1.68797 1.11276 1.18685 1.16808 1.24434 0.97167 1.00146 0.92209 1.22732 0.84245 1.01342 0.90288 1.45815 1.32252 1.10938 1.46771 1.16877 0.81093 0.84308 0.78710 1.90810 1.59231 1.26672 1.62952 1.21602 1.00032 0.90643 1.04188 1.73813 1.01107 1.25610 1.09414 1.42961 1.24160 1.08032 1.33417 0.71082 1.21190 1.01777 0.84978 1.03893 1.19907 0.97156 0.97265 1.00683 1.20015 0.97653 0.87958 1.02644 1.21675 0.98189 0.99276 0.96773 1.21575 1.00956 0.94578 0.98249 1.20240 0.96231 0.95417 0.96748 1.24328 0.91359 0.97989 1.00652 0.91677 0.79833 0.89097 0.92122 0.91139 0.88560 0.84933 0.75914 0.90410 0.89623 0.91703 0.91008 0.90808 0.91200 0.89849 0.90245 0.88672 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.19 13.96 55.50 0.77 -25.42 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.62 27.74 -169.99 -4.71 14.90 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 7 C -0.30 -8.75 10.16 -14.94 -0.15 -8.90 16 8 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 9 N -0.59 -14.48 5.09 -10.96 -0.06 -14.54 16 10 C 0.46 10.70 7.85 -10.98 -0.09 10.61 16 11 O -0.55 -15.55 16.01 5.55 0.09 -15.46 16 12 C 0.01 0.13 5.30 -4.97 -0.03 0.11 16 13 N -0.43 -7.06 5.82 -246.09 -1.43 -8.49 16 14 C -0.01 -0.14 7.52 -7.54 -0.06 -0.20 16 15 C 0.12 1.48 4.59 -67.72 -0.31 1.17 16 16 N -0.71 -7.79 5.38 -54.53 -0.29 -8.08 16 17 C 0.61 7.77 7.82 -12.39 -0.10 7.67 16 18 O -0.52 -8.12 15.40 5.31 0.08 -8.04 16 19 C 0.00 -0.05 7.12 -82.99 -0.59 -0.65 16 20 N -0.26 -2.50 11.96 33.28 0.40 -2.10 16 21 N -0.37 -2.44 6.82 33.42 0.23 -2.21 16 22 H 0.44 1.23 8.96 -190.21 -1.71 -0.47 16 23 C 0.01 0.06 7.12 -82.45 -0.59 -0.53 16 24 C -0.14 -1.36 5.99 -104.88 -0.63 -1.99 16 25 C -0.04 -0.39 5.54 -27.80 -0.15 -0.54 16 26 C -0.12 -0.68 5.91 -26.43 -0.16 -0.84 16 27 C -0.12 -0.49 5.89 -26.47 -0.16 -0.64 16 28 C -0.05 -0.18 6.31 -27.67 -0.17 -0.35 16 29 C -0.01 -0.16 7.45 -7.54 -0.06 -0.21 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 32 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 33 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 34 H 0.07 0.95 7.42 -51.93 -0.39 0.56 16 35 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.13 1.82 7.45 -51.93 -0.39 1.44 16 37 H 0.41 3.73 8.49 -40.82 -0.35 3.38 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.86 7.67 -51.93 -0.40 0.47 16 40 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -37.37 386.95 -10.45 -47.82 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -8.02 Total: 10.08 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -3.33 Total: 5.72 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -0.38 Total: -60.85 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.17 Total: -23.50 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.37 -10.45 -47.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665156883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.648 kcal (2) G-P(sol) polarization free energy of solvation -37.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds