Wall clock time and date at job start Wed Apr 1 2020 04:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10 15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12 16 16 N 1.46500 * 114.16958 * 139.67037 * 15 14 13 17 17 C 1.34775 * 120.00092 * 111.15664 * 16 15 14 18 18 O 1.21568 * 119.99826 * 0.02562 * 17 16 15 19 19 C 1.47708 * 120.00328 * 179.97438 * 17 16 15 20 20 N 1.32208 * 126.67719 * 359.69255 * 19 17 16 21 21 N 1.28845 * 110.15401 * 179.83692 * 20 19 17 22 22 H 0.96999 * 124.98123 * 180.02562 * 21 20 19 23 23 C 1.34320 * 110.03829 * 0.36605 * 21 20 19 24 24 C 1.35588 * 107.21604 * 359.85049 * 23 21 20 25 25 C 1.50373 * 124.61651 * 179.79263 * 24 23 21 26 26 C 1.53470 * 108.28878 * 343.74626 * 25 24 23 27 27 C 1.53112 * 109.50681 * 49.48661 * 26 25 24 28 28 C 1.50703 * 128.90292 * 179.88648 * 23 21 20 29 29 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 30 30 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.08999 * 113.47664 * 336.06792 * 14 13 12 35 35 H 1.08994 * 113.47488 * 106.52987 * 14 13 12 36 36 H 1.08999 * 114.16922 * 272.37539 * 15 14 13 37 37 H 0.97003 * 120.00179 * 291.16008 * 16 15 14 38 38 H 1.09001 * 109.70368 * 103.45595 * 25 24 23 39 39 H 1.09004 * 109.69447 * 224.05035 * 25 24 23 40 40 H 1.08999 * 109.46902 * 289.47647 * 26 25 24 41 41 H 1.08998 * 109.46227 * 169.49199 * 26 25 24 42 42 H 1.09003 * 109.43995 * 169.89333 * 27 26 25 43 43 H 1.08999 * 109.40994 * 49.99256 * 27 26 25 44 44 H 1.09000 * 109.69421 * 283.02415 * 28 23 21 45 45 H 1.08998 * 109.69544 * 43.60330 * 28 23 21 46 46 H 1.08994 * 113.48196 * 253.46980 * 29 13 12 47 47 H 1.09003 * 113.47819 * 23.94188 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 7 6.0507 -3.7551 0.0026 14 6 6.3171 -4.2212 1.3762 15 6 7.5910 -4.8911 0.8424 16 7 8.7504 -4.7677 1.7294 17 6 9.2370 -5.8562 2.3578 18 8 8.7140 -6.9405 2.1882 19 6 10.4063 -5.7320 3.2517 20 7 11.0775 -4.6262 3.5248 21 7 12.0374 -4.8809 4.3458 22 1 12.6640 -4.2250 4.6894 23 6 12.0477 -6.1891 4.6502 24 6 11.0253 -6.7669 3.9725 25 6 10.6830 -8.2301 4.0273 26 6 11.8841 -8.9840 4.6143 27 6 12.3421 -8.2929 5.9015 28 6 12.9830 -6.9414 5.5614 29 6 7.5054 -3.8013 -0.2354 30 1 -0.4850 0.8400 -0.0004 31 1 3.8649 -0.3630 0.0007 32 1 5.9249 -1.8559 -0.8873 33 1 5.9236 -1.8566 0.8927 34 1 6.5140 -3.4115 2.0790 35 1 5.5759 -4.9298 1.7457 36 1 7.4393 -5.9031 0.4670 37 1 9.1679 -3.9026 1.8645 38 1 9.8094 -8.3797 4.6618 39 1 10.4747 -8.5966 3.0221 40 1 12.7006 -8.9849 3.8923 41 1 11.5947 -10.0111 4.8367 42 1 13.0714 -8.9224 6.4115 43 1 11.4825 -8.1334 6.5526 44 1 13.9358 -7.1033 5.0573 45 1 13.1433 -6.3704 6.4759 46 1 7.7715 -4.1542 -1.2317 47 1 8.0195 -2.8796 0.0372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665156883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:12 Heat of formation + Delta-G solvation = 8.240603 kcal Electronic energy + Delta-G solvation = -29341.431759 eV Core-core repulsion = 25139.401975 eV Total energy + Delta-G solvation = -4202.029784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.87026 -41.71499 -40.24662 -39.47952 -37.82637 -36.01195 -35.16804 -33.77503 -33.64265 -31.42942 -30.93048 -30.35723 -27.53742 -26.98404 -25.83865 -24.70460 -24.19722 -23.05377 -21.54413 -21.30673 -20.95644 -20.27929 -19.99465 -18.76888 -18.04642 -17.85689 -17.59737 -17.06538 -16.73761 -16.59431 -16.24297 -15.72879 -15.58558 -15.38131 -15.16504 -14.85981 -14.65847 -14.59005 -14.53692 -14.14068 -14.09232 -14.03416 -13.71077 -13.68842 -13.08345 -12.98751 -12.77919 -12.42545 -12.38698 -11.97281 -11.92405 -11.84291 -11.75062 -11.69206 -11.62042 -11.50997 -11.16700 -10.48655 -10.45077 -10.24926 -10.09400 -9.81771 -9.63281 -8.41350 -6.02746 0.44115 1.06507 1.29103 1.35859 1.44456 1.77284 1.96213 2.09531 2.23111 2.26054 2.70760 3.12940 3.19881 3.32329 3.46051 3.63492 3.73751 3.85547 4.03761 4.05396 4.15772 4.18325 4.23687 4.30854 4.34410 4.36698 4.43898 4.59247 4.66353 4.68085 4.76630 4.78263 4.89997 4.98578 5.05628 5.14468 5.25277 5.28528 5.31722 5.35648 5.47914 5.50060 5.53267 5.87884 5.98927 6.08344 6.40500 6.59795 6.83074 6.88454 7.10557 7.39639 7.98588 8.76654 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.001741 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.882165 B =16078.403132 C =16515.815992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.969 3.031 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.230 1.230 7 C -0.330 4.330 8 H 0.051 0.949 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.612 6.612 12 C 0.021 3.979 13 N -0.474 5.474 14 C -0.013 4.013 15 C 0.129 3.871 16 N -0.692 5.692 17 C 0.601 3.399 18 O -0.563 6.563 19 C -0.033 4.033 20 N -0.267 5.267 21 N -0.354 5.354 22 H 0.463 0.537 23 C 0.027 3.973 24 C -0.171 4.171 25 C -0.045 4.045 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.045 4.045 29 C 0.006 3.994 30 H 0.279 0.721 31 H 0.390 0.610 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.112 0.888 37 H 0.418 0.582 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.825 -7.080 12.745 41.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.216 4.216 3 Si 0.788 3.212 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.153 1.153 7 C -0.459 4.459 8 H 0.069 0.931 9 N -0.234 5.234 10 C 0.238 3.762 11 O -0.496 6.496 12 C -0.110 4.110 13 N -0.197 5.197 14 C -0.143 4.143 15 C 0.023 3.977 16 N -0.343 5.343 17 C 0.387 3.613 18 O -0.439 6.439 19 C -0.192 4.192 20 N -0.105 5.105 21 N -0.070 5.070 22 H 0.312 0.688 23 C -0.101 4.101 24 C -0.182 4.182 25 C -0.083 4.083 26 C -0.155 4.155 27 C -0.152 4.152 28 C -0.084 4.084 29 C -0.123 4.123 30 H 0.089 0.911 31 H 0.226 0.774 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.256 0.744 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 37.347 -7.649 11.893 39.935 hybrid contribution -0.118 1.313 0.641 1.465 sum 37.229 -6.337 12.534 39.790 Atomic orbital electron populations 1.69814 1.08225 1.29268 1.50366 1.26167 0.96516 1.02851 0.96026 0.85320 0.79465 0.76405 0.80011 1.18012 1.20023 1.15276 1.18996 0.81612 0.94861 1.50470 0.93089 1.42018 1.05727 1.07528 1.68159 1.20956 0.90940 0.83260 0.81091 1.90556 1.71390 1.33032 1.54578 1.22492 0.90806 0.92265 1.05473 1.68714 1.14722 1.18726 1.17573 1.24463 0.97272 1.00288 0.92297 1.22403 0.83807 1.00760 0.90713 1.45635 1.31482 1.11180 1.46025 1.17211 0.81406 0.84009 0.78662 1.90786 1.60608 1.28167 1.64346 1.21447 1.00415 0.91983 1.05323 1.73729 1.01713 1.24916 1.10137 1.43072 1.23379 1.08523 1.32041 0.68843 1.21632 1.00855 0.84864 1.02753 1.20156 0.98565 0.97489 1.01946 1.19960 0.98702 0.88497 1.01150 1.21658 0.96796 0.99353 0.97665 1.21596 1.01324 0.95197 0.97132 1.20443 0.95930 0.94783 0.97232 1.24334 0.88365 0.98808 1.00794 0.91146 0.77407 0.85511 0.88545 0.89291 0.92222 0.87037 0.74426 0.91975 0.92164 0.91286 0.90404 0.88387 0.92078 0.87777 0.87656 0.87475 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.56 13.96 21.66 0.30 -57.26 16 2 C -0.02 -0.98 5.50 84.92 0.47 -0.51 16 3 Si 0.97 39.10 27.74 68.60 1.90 41.01 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 7 C -0.33 -19.91 10.16 84.04 0.85 -19.06 16 8 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 9 N -0.59 -28.62 5.09 -306.98 -1.56 -30.18 16 10 C 0.45 21.20 7.85 87.66 0.69 21.89 16 11 O -0.61 -36.20 16.01 -3.07 -0.05 -36.25 16 12 C 0.02 0.66 5.30 85.56 0.45 1.11 16 13 N -0.47 -14.87 5.82 -932.48 -5.43 -20.30 16 14 C -0.01 -0.38 7.52 83.58 0.63 0.25 16 15 C 0.13 3.16 4.59 45.45 0.21 3.37 16 16 N -0.69 -14.72 5.38 -444.69 -2.39 -17.11 16 17 C 0.60 15.88 7.82 86.75 0.68 16.56 16 18 O -0.56 -18.80 15.40 -3.93 -0.06 -18.86 16 19 C -0.03 -0.75 7.12 42.14 0.30 -0.45 16 20 N -0.27 -4.61 11.96 -48.62 -0.58 -5.19 16 21 N -0.35 -3.67 6.82 -48.18 -0.33 -4.00 16 22 H 0.46 0.90 8.96 -219.80 -1.97 -1.07 16 23 C 0.03 0.32 7.12 41.57 0.30 0.61 16 24 C -0.17 -3.30 5.99 -20.03 -0.12 -3.42 16 25 C -0.04 -0.83 5.54 29.90 0.17 -0.67 16 26 C -0.12 -1.22 5.91 30.79 0.18 -1.03 16 27 C -0.11 -0.67 5.89 30.77 0.18 -0.49 16 28 C -0.05 -0.18 6.31 29.98 0.19 0.01 16 29 C 0.01 0.12 7.45 83.58 0.62 0.74 16 30 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.39 15.33 5.76 -92.71 -0.53 14.79 16 32 H 0.13 3.04 8.08 -2.39 -0.02 3.03 16 33 H 0.10 2.33 7.30 -2.39 -0.02 2.31 16 34 H 0.09 2.24 7.42 -2.39 -0.02 2.22 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.11 3.24 7.45 -2.39 -0.02 3.22 16 37 H 0.42 6.74 8.49 -92.71 -0.79 5.95 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.06 1.37 7.67 -2.38 -0.02 1.35 16 40 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.06 0.48 8.11 -2.39 -0.02 0.46 16 44 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.11 1.45 7.90 -2.39 -0.02 1.44 16 Total: -1.00 -91.87 386.95 -4.71 -96.58 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -2.31 Total: 32.65 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 5.80 Total: 18.92 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -9.99 Total: -134.04 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -0.11 Total: -55.11 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.90 Total: 41.01 kcal Total: -91.87 -4.71 -96.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665156883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.821 kcal (2) G-P(sol) polarization free energy of solvation -91.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds