Wall clock time and date at job start Wed Apr 1 2020 04:28:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31413 * 1
3 3 Si 1.86804 * 119.99485 * 2 1
4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1
5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1
6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1
7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1
9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1
10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2
11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7
12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7
13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9
14 14 C 1.47480 * 111.00171 * 265.96874 * 13 12 10
15 15 C 1.53513 * 87.93170 * 221.29782 * 14 13 12
16 16 N 1.46500 * 114.16958 * 139.67037 * 15 14 13
17 17 C 1.34775 * 120.00092 * 111.15664 * 16 15 14
18 18 O 1.21568 * 119.99826 * 0.02562 * 17 16 15
19 19 C 1.47708 * 120.00328 * 179.97438 * 17 16 15
20 20 N 1.32208 * 126.67719 * 359.69255 * 19 17 16
21 21 N 1.28845 * 110.15401 * 179.83692 * 20 19 17
22 22 H 0.96999 * 124.98123 * 180.02562 * 21 20 19
23 23 C 1.34320 * 110.03829 * 0.36605 * 21 20 19
24 24 C 1.35588 * 107.21604 * 359.85049 * 23 21 20
25 25 C 1.50373 * 124.61651 * 179.79263 * 24 23 21
26 26 C 1.53470 * 108.28878 * 343.74626 * 25 24 23
27 27 C 1.53112 * 109.50681 * 49.48661 * 26 25 24
28 28 C 1.50703 * 128.90292 * 179.88648 * 23 21 20
29 29 C 1.47482 * 110.99764 * 169.99672 * 13 12 10
30 30 H 0.96993 * 120.00255 * 0.02562 * 1 2 3
31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2
32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9
33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9
34 34 H 1.08999 * 113.47664 * 336.06792 * 14 13 12
35 35 H 1.08994 * 113.47488 * 106.52987 * 14 13 12
36 36 H 1.08999 * 114.16922 * 272.37539 * 15 14 13
37 37 H 0.97003 * 120.00179 * 291.16008 * 16 15 14
38 38 H 1.09001 * 109.70368 * 103.45595 * 25 24 23
39 39 H 1.09004 * 109.69447 * 224.05035 * 25 24 23
40 40 H 1.08999 * 109.46902 * 289.47647 * 26 25 24
41 41 H 1.08998 * 109.46227 * 169.49199 * 26 25 24
42 42 H 1.09003 * 109.43995 * 169.89333 * 27 26 25
43 43 H 1.08999 * 109.40994 * 49.99256 * 27 26 25
44 44 H 1.09000 * 109.69421 * 283.02415 * 28 23 21
45 45 H 1.08998 * 109.69544 * 43.60330 * 28 23 21
46 46 H 1.08994 * 113.48196 * 253.46980 * 29 13 12
47 47 H 1.09003 * 113.47819 * 23.94188 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6179 0.0000
4 1 2.4955 2.0465 -1.4000
5 1 1.4453 2.6527 0.7001
6 1 3.5455 1.4403 0.7001
7 6 2.0089 -1.2032 0.0005
8 1 1.4691 -2.1386 0.0005
9 7 3.3799 -1.2031 0.0011
10 6 4.0539 -2.3703 0.0011
11 8 3.4475 -3.4208 0.0011
12 6 5.5609 -2.3701 0.0022
13 7 6.0507 -3.7551 0.0026
14 6 6.3171 -4.2212 1.3762
15 6 7.5910 -4.8911 0.8424
16 7 8.7504 -4.7677 1.7294
17 6 9.2370 -5.8562 2.3578
18 8 8.7140 -6.9405 2.1882
19 6 10.4063 -5.7320 3.2517
20 7 11.0775 -4.6262 3.5248
21 7 12.0374 -4.8809 4.3458
22 1 12.6640 -4.2250 4.6894
23 6 12.0477 -6.1891 4.6502
24 6 11.0253 -6.7669 3.9725
25 6 10.6830 -8.2301 4.0273
26 6 11.8841 -8.9840 4.6143
27 6 12.3421 -8.2929 5.9015
28 6 12.9830 -6.9414 5.5614
29 6 7.5054 -3.8013 -0.2354
30 1 -0.4850 0.8400 -0.0004
31 1 3.8649 -0.3630 0.0007
32 1 5.9249 -1.8559 -0.8873
33 1 5.9236 -1.8566 0.8927
34 1 6.5140 -3.4115 2.0790
35 1 5.5759 -4.9298 1.7457
36 1 7.4393 -5.9031 0.4670
37 1 9.1679 -3.9026 1.8645
38 1 9.8094 -8.3797 4.6618
39 1 10.4747 -8.5966 3.0221
40 1 12.7006 -8.9849 3.8923
41 1 11.5947 -10.0111 4.8367
42 1 13.0714 -8.9224 6.4115
43 1 11.4825 -8.1334 6.5526
44 1 13.9358 -7.1033 5.0573
45 1 13.1433 -6.3704 6.4759
46 1 7.7715 -4.1542 -1.2317
47 1 8.0195 -2.8796 0.0372
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001665156883.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:28:12
Heat of formation + Delta-G solvation = 8.240603 kcal
Electronic energy + Delta-G solvation = -29341.431759 eV
Core-core repulsion = 25139.401975 eV
Total energy + Delta-G solvation = -4202.029784 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-43.87026 -41.71499 -40.24662 -39.47952 -37.82637 -36.01195 -35.16804 -33.77503
-33.64265 -31.42942 -30.93048 -30.35723 -27.53742 -26.98404 -25.83865 -24.70460
-24.19722 -23.05377 -21.54413 -21.30673 -20.95644 -20.27929 -19.99465 -18.76888
-18.04642 -17.85689 -17.59737 -17.06538 -16.73761 -16.59431 -16.24297 -15.72879
-15.58558 -15.38131 -15.16504 -14.85981 -14.65847 -14.59005 -14.53692 -14.14068
-14.09232 -14.03416 -13.71077 -13.68842 -13.08345 -12.98751 -12.77919 -12.42545
-12.38698 -11.97281 -11.92405 -11.84291 -11.75062 -11.69206 -11.62042 -11.50997
-11.16700 -10.48655 -10.45077 -10.24926 -10.09400 -9.81771 -9.63281 -8.41350
-6.02746 0.44115 1.06507 1.29103 1.35859 1.44456 1.77284 1.96213
2.09531 2.23111 2.26054 2.70760 3.12940 3.19881 3.32329 3.46051
3.63492 3.73751 3.85547 4.03761 4.05396 4.15772 4.18325 4.23687
4.30854 4.34410 4.36698 4.43898 4.59247 4.66353 4.68085 4.76630
4.78263 4.89997 4.98578 5.05628 5.14468 5.25277 5.28528 5.31722
5.35648 5.47914 5.50060 5.53267 5.87884 5.98927 6.08344 6.40500
6.59795 6.83074 6.88454 7.10557 7.39639 7.98588 8.76654
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.023467 B = 0.001741 C = 0.001695
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1192.882165 B =16078.403132 C =16515.815992
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.017 4.017
3 Si 0.969 3.031
4 H -0.256 1.256
5 H -0.275 1.275
6 H -0.230 1.230
7 C -0.330 4.330
8 H 0.051 0.949
9 N -0.592 5.592
10 C 0.450 3.550
11 O -0.612 6.612
12 C 0.021 3.979
13 N -0.474 5.474
14 C -0.013 4.013
15 C 0.129 3.871
16 N -0.692 5.692
17 C 0.601 3.399
18 O -0.563 6.563
19 C -0.033 4.033
20 N -0.267 5.267
21 N -0.354 5.354
22 H 0.463 0.537
23 C 0.027 3.973
24 C -0.171 4.171
25 C -0.045 4.045
26 C -0.117 4.117
27 C -0.115 4.115
28 C -0.045 4.045
29 C 0.006 3.994
30 H 0.279 0.721
31 H 0.390 0.610
32 H 0.127 0.873
33 H 0.097 0.903
34 H 0.089 0.911
35 H 0.059 0.941
36 H 0.112 0.888
37 H 0.418 0.582
38 H 0.062 0.938
39 H 0.060 0.940
40 H 0.068 0.932
41 H 0.077 0.923
42 H 0.098 0.902
43 H 0.060 0.940
44 H 0.104 0.896
45 H 0.105 0.895
46 H 0.107 0.893
47 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 38.825 -7.080 12.745 41.472
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.577 5.577
2 C -0.216 4.216
3 Si 0.788 3.212
4 H -0.180 1.180
5 H -0.200 1.200
6 H -0.153 1.153
7 C -0.459 4.459
8 H 0.069 0.931
9 N -0.234 5.234
10 C 0.238 3.762
11 O -0.496 6.496
12 C -0.110 4.110
13 N -0.197 5.197
14 C -0.143 4.143
15 C 0.023 3.977
16 N -0.343 5.343
17 C 0.387 3.613
18 O -0.439 6.439
19 C -0.192 4.192
20 N -0.105 5.105
21 N -0.070 5.070
22 H 0.312 0.688
23 C -0.101 4.101
24 C -0.182 4.182
25 C -0.083 4.083
26 C -0.155 4.155
27 C -0.152 4.152
28 C -0.084 4.084
29 C -0.123 4.123
30 H 0.089 0.911
31 H 0.226 0.774
32 H 0.145 0.855
33 H 0.115 0.885
34 H 0.107 0.893
35 H 0.078 0.922
36 H 0.130 0.870
37 H 0.256 0.744
38 H 0.080 0.920
39 H 0.078 0.922
40 H 0.087 0.913
41 H 0.096 0.904
42 H 0.116 0.884
43 H 0.079 0.921
44 H 0.122 0.878
45 H 0.123 0.877
46 H 0.125 0.875
47 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 37.347 -7.649 11.893 39.935
hybrid contribution -0.118 1.313 0.641 1.465
sum 37.229 -6.337 12.534 39.790
Atomic orbital electron populations
1.69814 1.08225 1.29268 1.50366 1.26167 0.96516 1.02851 0.96026
0.85320 0.79465 0.76405 0.80011 1.18012 1.20023 1.15276 1.18996
0.81612 0.94861 1.50470 0.93089 1.42018 1.05727 1.07528 1.68159
1.20956 0.90940 0.83260 0.81091 1.90556 1.71390 1.33032 1.54578
1.22492 0.90806 0.92265 1.05473 1.68714 1.14722 1.18726 1.17573
1.24463 0.97272 1.00288 0.92297 1.22403 0.83807 1.00760 0.90713
1.45635 1.31482 1.11180 1.46025 1.17211 0.81406 0.84009 0.78662
1.90786 1.60608 1.28167 1.64346 1.21447 1.00415 0.91983 1.05323
1.73729 1.01713 1.24916 1.10137 1.43072 1.23379 1.08523 1.32041
0.68843 1.21632 1.00855 0.84864 1.02753 1.20156 0.98565 0.97489
1.01946 1.19960 0.98702 0.88497 1.01150 1.21658 0.96796 0.99353
0.97665 1.21596 1.01324 0.95197 0.97132 1.20443 0.95930 0.94783
0.97232 1.24334 0.88365 0.98808 1.00794 0.91146 0.77407 0.85511
0.88545 0.89291 0.92222 0.87037 0.74426 0.91975 0.92164 0.91286
0.90404 0.88387 0.92078 0.87777 0.87656 0.87475 0.87411
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.56 13.96 21.66 0.30 -57.26 16
2 C -0.02 -0.98 5.50 84.92 0.47 -0.51 16
3 Si 0.97 39.10 27.74 68.60 1.90 41.01 16
4 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16
5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16
6 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16
7 C -0.33 -19.91 10.16 84.04 0.85 -19.06 16
8 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16
9 N -0.59 -28.62 5.09 -306.98 -1.56 -30.18 16
10 C 0.45 21.20 7.85 87.66 0.69 21.89 16
11 O -0.61 -36.20 16.01 -3.07 -0.05 -36.25 16
12 C 0.02 0.66 5.30 85.56 0.45 1.11 16
13 N -0.47 -14.87 5.82 -932.48 -5.43 -20.30 16
14 C -0.01 -0.38 7.52 83.58 0.63 0.25 16
15 C 0.13 3.16 4.59 45.45 0.21 3.37 16
16 N -0.69 -14.72 5.38 -444.69 -2.39 -17.11 16
17 C 0.60 15.88 7.82 86.75 0.68 16.56 16
18 O -0.56 -18.80 15.40 -3.93 -0.06 -18.86 16
19 C -0.03 -0.75 7.12 42.14 0.30 -0.45 16
20 N -0.27 -4.61 11.96 -48.62 -0.58 -5.19 16
21 N -0.35 -3.67 6.82 -48.18 -0.33 -4.00 16
22 H 0.46 0.90 8.96 -219.80 -1.97 -1.07 16
23 C 0.03 0.32 7.12 41.57 0.30 0.61 16
24 C -0.17 -3.30 5.99 -20.03 -0.12 -3.42 16
25 C -0.04 -0.83 5.54 29.90 0.17 -0.67 16
26 C -0.12 -1.22 5.91 30.79 0.18 -1.03 16
27 C -0.11 -0.67 5.89 30.77 0.18 -0.49 16
28 C -0.05 -0.18 6.31 29.98 0.19 0.01 16
29 C 0.01 0.12 7.45 83.58 0.62 0.74 16
30 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16
31 H 0.39 15.33 5.76 -92.71 -0.53 14.79 16
32 H 0.13 3.04 8.08 -2.39 -0.02 3.03 16
33 H 0.10 2.33 7.30 -2.39 -0.02 2.31 16
34 H 0.09 2.24 7.42 -2.39 -0.02 2.22 16
35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16
36 H 0.11 3.24 7.45 -2.39 -0.02 3.22 16
37 H 0.42 6.74 8.49 -92.71 -0.79 5.95 16
38 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16
39 H 0.06 1.37 7.67 -2.38 -0.02 1.35 16
40 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16
41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16
42 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16
43 H 0.06 0.48 8.11 -2.39 -0.02 0.46 16
44 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16
45 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16
46 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16
47 H 0.11 1.45 7.90 -2.39 -0.02 1.44 16
Total: -1.00 -91.87 386.95 -4.71 -96.58
By element:
Atomic # 1 Polarization: 34.95 SS G_CDS: -2.31 Total: 32.65 kcal
Atomic # 6 Polarization: 13.12 SS G_CDS: 5.80 Total: 18.92 kcal
Atomic # 7 Polarization: -124.05 SS G_CDS: -9.99 Total: -134.04 kcal
Atomic # 8 Polarization: -55.00 SS G_CDS: -0.11 Total: -55.11 kcal
Atomic # 14 Polarization: 39.10 SS G_CDS: 1.90 Total: 41.01 kcal
Total: -91.87 -4.71 -96.58 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001665156883.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.821 kcal
(2) G-P(sol) polarization free energy of solvation -91.871 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.580 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.241 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds