Wall clock time and date at job start Wed Apr 1 2020 04:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65598 * 119.99948 * 2 1 4 4 O 1.42104 * 104.28111 * 308.93249 * 3 2 1 5 5 O 1.42098 * 104.27708 * 181.07161 * 3 2 1 6 6 C 1.81409 * 104.44791 * 65.00107 * 3 2 1 7 7 C 1.53003 * 109.47096 * 179.97438 * 6 3 2 8 8 C 1.50698 * 109.46931 * 180.02562 * 7 6 3 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.52999 * 109.47001 * 295.13027 * 14 13 12 16 16 N 1.46500 * 109.46759 * 179.97438 * 15 14 13 17 17 C 1.36943 * 120.00115 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99715 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00166 * 179.97438 * 17 16 15 20 20 N 1.31614 * 119.99790 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99964 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47130 * 89.99660 * 21 19 17 23 23 H 1.48502 * 109.46735 * 209.99746 * 21 19 17 24 24 H 1.48495 * 109.47001 * 329.99268 * 21 19 17 25 25 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 26 26 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 27 27 H 1.08996 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47420 * 299.99964 * 1 2 3 29 29 H 1.09009 * 109.47179 * 59.99738 * 1 2 3 30 30 H 0.97000 * 119.99881 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.46985 * 60.00014 * 6 3 2 32 32 H 1.09001 * 109.47249 * 299.99999 * 6 3 2 33 33 H 1.09001 * 109.46646 * 60.00038 * 7 6 3 34 34 H 1.09001 * 109.47188 * 300.00181 * 7 6 3 35 35 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 36 36 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 37 37 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 38 38 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 39 39 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 40 40 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 41 41 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 42 42 H 1.08991 * 109.47450 * 299.99495 * 15 14 13 43 43 H 1.08999 * 109.47142 * 60.00302 * 15 14 13 44 44 H 0.97005 * 120.00425 * 359.97438 * 16 15 14 45 45 H 0.97006 * 120.00278 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.50232 * 301.42239 * 25 13 12 47 47 H 1.09007 * 109.52628 * 181.33900 * 25 13 12 48 48 H 1.08994 * 109.58580 * 353.38021 * 26 10 8 49 49 H 1.09006 * 109.57831 * 113.65514 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1704 -1.0712 5 8 3.6606 1.0492 -0.0258 6 6 1.8764 2.1973 1.5921 7 6 2.5899 3.5453 1.7138 8 6 2.2443 4.1789 3.0367 9 8 1.5009 3.6083 3.8065 10 7 2.7613 5.3797 3.3643 11 6 2.4332 6.0104 4.6500 12 6 3.7353 6.3653 5.3750 13 6 4.6058 7.2272 4.4526 14 6 5.8938 7.6129 5.1829 15 6 5.5548 8.5071 6.3772 16 7 6.7880 8.8758 7.0767 17 6 6.7327 9.6774 8.1857 18 1 5.7800 10.0380 8.5443 19 6 7.9012 10.0263 8.8488 20 7 7.8480 10.7971 9.9143 21 14 9.5491 9.4031 8.2281 22 1 10.1084 10.3715 7.2510 23 1 10.4854 9.2568 9.3714 24 1 9.3635 8.0856 7.5686 25 6 4.9533 6.4375 3.1887 26 6 3.6629 6.0834 2.4418 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.9500 -0.8401 -0.0004 31 1 2.1958 1.5430 2.4033 32 1 0.7987 2.3496 1.6511 33 1 2.2709 4.1997 0.9026 34 1 3.6676 3.3926 1.6550 35 1 1.8537 6.9169 4.4751 36 1 1.8529 5.3177 5.2593 37 1 3.5056 6.9185 6.2856 38 1 4.2708 5.4506 5.6297 39 1 4.0598 8.1298 4.1782 40 1 6.3957 6.7115 5.5347 41 1 6.5510 8.1518 4.5005 42 1 5.0529 9.4084 6.0254 43 1 4.8976 7.9681 7.0597 44 1 7.6438 8.5516 6.7549 45 1 8.6645 11.0414 10.3776 46 1 5.4774 5.5224 3.4640 47 1 5.5916 7.0427 2.5449 48 1 3.8958 5.4378 1.5951 49 1 3.1822 6.9945 2.0853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666211666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:07 Heat of formation + Delta-G solvation = -104.943132 kcal Electronic energy + Delta-G solvation = -28390.841758 eV Core-core repulsion = 24287.055159 eV Total energy + Delta-G solvation = -4103.786599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60543 -38.21066 -37.62764 -36.48882 -35.58132 -35.54517 -33.98982 -33.53172 -31.42253 -31.26438 -28.96328 -26.56351 -26.14499 -25.00041 -23.32705 -22.63113 -21.24230 -20.47724 -19.89131 -19.33049 -18.41613 -17.81866 -17.50860 -17.01803 -16.55468 -16.16258 -16.15823 -15.35303 -14.90032 -14.70165 -14.65571 -14.41105 -14.29418 -13.98692 -13.79851 -13.62700 -13.43327 -13.38073 -13.03151 -12.88429 -12.65179 -12.61825 -12.51667 -12.35207 -12.20366 -12.08160 -11.59158 -11.51338 -11.47518 -11.34219 -11.16266 -10.83397 -10.68040 -10.41894 -10.32354 -10.22997 -10.12540 -9.97138 -9.59282 -8.95289 -8.88016 -7.22339 -5.76976 -3.12266 -0.31614 2.13901 2.22114 2.61151 3.21589 3.36932 3.39639 3.44730 3.66984 3.78750 4.07291 4.21529 4.39910 4.44054 4.58591 4.59962 4.65826 4.72610 4.82466 4.86272 4.89140 5.05550 5.09083 5.14786 5.16809 5.24557 5.27546 5.40858 5.48932 5.54053 5.58265 5.69548 5.71495 5.82417 5.97007 6.03042 6.08001 6.17440 6.30827 6.32658 6.34102 6.74571 6.79142 7.03055 7.77651 7.99723 8.42265 9.21729 9.94285 10.14199 11.41511 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.001714 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.500068 B =16331.980115 C =16781.100220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.123 6.123 3 S 2.614 3.386 4 O -0.953 6.953 5 O -0.955 6.955 6 C -0.613 4.613 7 C -0.136 4.136 8 C 0.524 3.476 9 O -0.539 6.539 10 N -0.608 5.608 11 C 0.110 3.890 12 C -0.132 4.132 13 C -0.083 4.083 14 C -0.125 4.125 15 C 0.156 3.844 16 N -0.758 5.758 17 C -0.244 4.244 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.132 4.132 26 C 0.101 3.899 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.419 0.581 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.025 0.975 43 H 0.027 0.973 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.118 -21.524 -23.907 35.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.882 5.882 3 S 2.705 3.295 4 O -0.943 6.943 5 O -0.945 6.945 6 C -0.742 4.742 7 C -0.177 4.177 8 C 0.310 3.690 9 O -0.416 6.416 10 N -0.341 5.341 11 C -0.012 4.012 12 C -0.170 4.170 13 C -0.102 4.102 14 C -0.163 4.163 15 C 0.029 3.971 16 N -0.403 5.403 17 C -0.374 4.374 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.170 4.170 26 C -0.021 4.021 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.253 0.747 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.192 0.808 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.200 -21.207 -24.005 35.895 hybrid contribution 1.158 -0.693 0.407 1.410 sum -15.042 -21.900 -23.598 35.535 Atomic orbital electron populations 1.21545 0.78558 1.04501 1.02096 1.55352 1.16111 1.24588 1.92161 1.04946 0.73763 0.74015 0.76760 1.93617 1.78821 1.72323 1.49501 1.93631 1.32553 1.81140 1.87157 1.30423 1.11841 1.07610 1.24330 1.21402 1.02745 0.94878 0.98667 1.20136 0.80262 0.80701 0.87902 1.90697 1.36684 1.62216 1.52042 1.48146 1.47317 1.19177 1.19503 1.21711 0.97633 0.98037 0.83785 1.22116 0.95274 1.00581 0.99023 1.21134 0.96747 0.98019 0.94285 1.21811 0.96424 1.00146 0.97901 1.20681 0.89710 0.95285 0.91429 1.42739 1.03227 1.61136 1.33247 1.19074 0.95232 1.21421 1.01708 0.89277 1.24685 0.97340 0.99779 0.97484 1.69704 1.27279 1.40430 1.20863 0.86521 0.85240 0.78623 0.77979 1.21089 1.21725 1.20390 1.22014 0.96379 1.01188 0.97414 1.21903 0.90656 0.97580 0.91985 0.89814 0.92035 0.91213 0.74700 0.83982 0.84243 0.87202 0.87139 0.91196 0.88999 0.89475 0.91497 0.90690 0.92074 0.91899 0.95725 0.95477 0.80751 0.93079 0.91284 0.90217 0.89848 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.21 11.03 59.85 0.66 0.87 16 2 N -1.12 -4.54 6.08 -16.63 -0.10 -4.64 16 3 S 2.61 16.50 5.46 -107.50 -0.59 15.91 16 4 O -0.95 -8.95 17.73 -57.54 -1.02 -9.97 16 5 O -0.95 -9.14 18.08 -57.54 -1.04 -10.18 16 6 C -0.61 -3.39 5.31 37.16 0.20 -3.20 16 7 C -0.14 -0.88 4.05 -27.88 -0.11 -1.00 16 8 C 0.52 5.18 7.70 -10.99 -0.08 5.10 16 9 O -0.54 -7.10 15.39 5.56 0.09 -7.01 16 10 N -0.61 -5.57 2.97 -172.74 -0.51 -6.09 16 11 C 0.11 1.10 6.42 -3.71 -0.02 1.08 16 12 C -0.13 -1.43 5.16 -26.45 -0.14 -1.57 16 13 C -0.08 -0.88 2.15 -90.42 -0.19 -1.07 16 14 C -0.12 -1.75 4.80 -26.73 -0.13 -1.88 16 15 C 0.16 2.91 6.02 -4.04 -0.02 2.89 16 16 N -0.76 -18.13 5.41 -59.91 -0.32 -18.45 16 17 C -0.24 -7.01 10.47 -15.06 -0.16 -7.16 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.58 13.97 55.49 0.78 -28.80 16 21 Si 0.89 22.25 27.74 -169.99 -4.71 17.54 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C -0.13 -1.09 5.37 -26.59 -0.14 -1.23 16 26 C 0.10 0.70 6.34 -3.68 -0.02 0.68 16 27 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.06 0.09 7.73 -51.93 -0.40 -0.31 16 29 H 0.07 0.22 8.04 -51.92 -0.42 -0.20 16 30 H 0.42 1.11 8.92 -34.47 -0.31 0.80 16 31 H 0.14 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.14 0.65 7.73 -51.92 -0.40 0.25 16 33 H 0.11 0.49 7.94 -51.93 -0.41 0.08 16 34 H 0.11 0.55 7.69 -51.93 -0.40 0.15 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.03 7.00 -51.93 -0.36 0.67 16 37 H 0.09 1.02 6.52 -51.93 -0.34 0.68 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.03 0.51 6.53 -51.93 -0.34 0.18 16 44 H 0.36 8.39 5.53 -40.82 -0.23 8.16 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 48 H 0.08 0.39 5.93 -51.93 -0.31 0.08 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 399.35 15.07 6.02 6.02 Total: -1.00 -39.65 399.35 -9.84 -49.50 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -8.15 Total: 2.69 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.27 Total: -6.52 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.16 Total: -57.98 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -1.97 Total: -27.16 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Atomic # 16 Polarization: 16.50 SS G_CDS: -0.59 Total: 15.91 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.65 -9.84 -49.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666211666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.447 kcal (2) G-P(sol) polarization free energy of solvation -39.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds