Wall clock time and date at job start Wed Apr 1 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65598 * 119.99948 * 2 1 4 4 O 1.42104 * 104.28111 * 308.93249 * 3 2 1 5 5 O 1.42098 * 104.27708 * 181.07161 * 3 2 1 6 6 C 1.81409 * 104.44791 * 65.00107 * 3 2 1 7 7 C 1.53003 * 109.47096 * 179.97438 * 6 3 2 8 8 C 1.50698 * 109.46931 * 180.02562 * 7 6 3 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.52999 * 109.47001 * 295.13027 * 14 13 12 16 16 N 1.46500 * 109.46759 * 179.97438 * 15 14 13 17 17 C 1.36943 * 120.00115 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99715 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00166 * 179.97438 * 17 16 15 20 20 N 1.31614 * 119.99790 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99964 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47130 * 89.99660 * 21 19 17 23 23 H 1.48502 * 109.46735 * 209.99746 * 21 19 17 24 24 H 1.48495 * 109.47001 * 329.99268 * 21 19 17 25 25 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 26 26 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 27 27 H 1.08996 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47420 * 299.99964 * 1 2 3 29 29 H 1.09009 * 109.47179 * 59.99738 * 1 2 3 30 30 H 0.97000 * 119.99881 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.46985 * 60.00014 * 6 3 2 32 32 H 1.09001 * 109.47249 * 299.99999 * 6 3 2 33 33 H 1.09001 * 109.46646 * 60.00038 * 7 6 3 34 34 H 1.09001 * 109.47188 * 300.00181 * 7 6 3 35 35 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 36 36 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 37 37 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 38 38 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 39 39 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 40 40 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 41 41 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 42 42 H 1.08991 * 109.47450 * 299.99495 * 15 14 13 43 43 H 1.08999 * 109.47142 * 60.00302 * 15 14 13 44 44 H 0.97005 * 120.00425 * 359.97438 * 16 15 14 45 45 H 0.97006 * 120.00278 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.50232 * 301.42239 * 25 13 12 47 47 H 1.09007 * 109.52628 * 181.33900 * 25 13 12 48 48 H 1.08994 * 109.58580 * 353.38021 * 26 10 8 49 49 H 1.09006 * 109.57831 * 113.65514 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1704 -1.0712 5 8 3.6606 1.0492 -0.0258 6 6 1.8764 2.1973 1.5921 7 6 2.5899 3.5453 1.7138 8 6 2.2443 4.1789 3.0367 9 8 1.5009 3.6083 3.8065 10 7 2.7613 5.3797 3.3643 11 6 2.4332 6.0104 4.6500 12 6 3.7353 6.3653 5.3750 13 6 4.6058 7.2272 4.4526 14 6 5.8938 7.6129 5.1829 15 6 5.5548 8.5071 6.3772 16 7 6.7880 8.8758 7.0767 17 6 6.7327 9.6774 8.1857 18 1 5.7800 10.0380 8.5443 19 6 7.9012 10.0263 8.8488 20 7 7.8480 10.7971 9.9143 21 14 9.5491 9.4031 8.2281 22 1 10.1084 10.3715 7.2510 23 1 10.4854 9.2568 9.3714 24 1 9.3635 8.0856 7.5686 25 6 4.9533 6.4375 3.1887 26 6 3.6629 6.0834 2.4418 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.9500 -0.8401 -0.0004 31 1 2.1958 1.5430 2.4033 32 1 0.7987 2.3496 1.6511 33 1 2.2709 4.1997 0.9026 34 1 3.6676 3.3926 1.6550 35 1 1.8537 6.9169 4.4751 36 1 1.8529 5.3177 5.2593 37 1 3.5056 6.9185 6.2856 38 1 4.2708 5.4506 5.6297 39 1 4.0598 8.1298 4.1782 40 1 6.3957 6.7115 5.5347 41 1 6.5510 8.1518 4.5005 42 1 5.0529 9.4084 6.0254 43 1 4.8976 7.9681 7.0597 44 1 7.6438 8.5516 6.7549 45 1 8.6645 11.0414 10.3776 46 1 5.4774 5.5224 3.4640 47 1 5.5916 7.0427 2.5449 48 1 3.8958 5.4378 1.5951 49 1 3.1822 6.9945 2.0853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666211666.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:06 Heat of formation + Delta-G solvation = -136.679319 kcal Electronic energy + Delta-G solvation = -28392.217942 eV Core-core repulsion = 24287.055159 eV Total energy + Delta-G solvation = -4105.162783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33855 -39.09184 -38.22991 -37.09367 -37.04748 -35.86717 -35.11208 -34.36409 -33.27329 -32.01482 -30.30725 -27.06803 -26.80311 -26.03538 -24.44173 -23.77426 -22.65209 -21.40870 -20.38060 -19.99500 -19.61616 -18.95812 -18.36318 -17.52130 -17.14246 -16.84136 -16.76051 -16.62012 -15.94484 -15.88820 -15.76956 -15.21917 -15.05089 -14.94012 -14.67119 -14.59899 -14.43598 -14.34049 -13.83518 -13.75907 -13.62954 -13.39032 -13.25824 -13.14587 -13.09404 -12.92444 -12.62317 -12.56261 -12.48004 -12.25874 -12.19180 -12.08883 -11.93966 -11.85535 -11.72083 -11.33749 -11.27212 -10.98034 -10.83599 -10.45630 -9.69018 -9.29576 -8.04381 -5.38020 -0.80089 1.36695 1.40879 1.48357 1.51477 1.71802 1.97370 2.47416 2.73688 3.20502 3.26948 3.27678 3.50360 3.56865 3.79535 3.80302 3.85034 4.05170 4.12587 4.20291 4.24415 4.33931 4.39840 4.45787 4.53063 4.53560 4.64578 4.66687 4.75020 4.78122 4.85474 4.90041 4.93144 4.97219 5.02764 5.05433 5.11376 5.17952 5.28685 5.38099 5.55695 5.55979 5.74242 6.09292 6.20013 6.35187 7.06287 7.06976 7.83974 8.02892 9.17194 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.001714 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.500068 B =16331.980115 C =16781.100220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.119 6.119 3 S 2.637 3.363 4 O -0.985 6.985 5 O -0.989 6.989 6 C -0.605 4.605 7 C -0.144 4.144 8 C 0.518 3.482 9 O -0.580 6.580 10 N -0.609 5.609 11 C 0.114 3.886 12 C -0.128 4.128 13 C -0.077 4.077 14 C -0.112 4.112 15 C 0.150 3.850 16 N -0.762 5.762 17 C -0.239 4.239 18 H 0.054 0.946 19 C -0.067 4.067 20 N -0.984 5.984 21 Si 0.960 3.040 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.252 1.252 25 C -0.128 4.128 26 C 0.097 3.903 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.426 0.574 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.023 0.977 43 H 0.022 0.978 44 H 0.366 0.634 45 H 0.258 0.742 46 H 0.064 0.936 47 H 0.097 0.903 48 H 0.112 0.888 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.665 -22.904 -26.679 38.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.880 5.880 3 S 2.729 3.271 4 O -0.974 6.974 5 O -0.979 6.979 6 C -0.735 4.735 7 C -0.184 4.184 8 C 0.306 3.694 9 O -0.460 6.460 10 N -0.341 5.341 11 C -0.009 4.009 12 C -0.166 4.166 13 C -0.096 4.096 14 C -0.150 4.150 15 C 0.025 3.975 16 N -0.407 5.407 17 C -0.370 4.370 18 H 0.072 0.928 19 C -0.258 4.258 20 N -0.635 5.635 21 Si 0.787 3.213 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.176 1.176 25 C -0.166 4.166 26 C -0.024 4.024 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.262 0.738 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.041 0.959 43 H 0.040 0.960 44 H 0.199 0.801 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.130 0.870 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.758 -22.614 -26.848 38.477 hybrid contribution 0.866 -0.240 1.338 1.611 sum -14.892 -22.853 -25.510 37.347 Atomic orbital electron populations 1.21783 0.77502 1.06030 1.02490 1.55133 1.16805 1.24099 1.91993 1.04079 0.72705 0.73876 0.76392 1.93576 1.79150 1.73375 1.51340 1.93581 1.34816 1.81774 1.87729 1.30346 1.12490 1.07315 1.23370 1.21590 1.04121 0.95404 0.97333 1.20708 0.79537 0.80518 0.88624 1.90679 1.38576 1.63236 1.53538 1.48258 1.47395 1.19169 1.19307 1.21567 0.96881 0.98105 0.84322 1.22028 0.95845 0.99920 0.98785 1.21089 0.94860 0.98636 0.94978 1.21704 0.98315 0.98866 0.96149 1.20902 0.87777 0.96044 0.92825 1.42783 1.05258 1.60429 1.32277 1.19067 0.93893 1.21263 1.02814 0.92842 1.25582 1.01796 1.00535 0.97903 1.69896 1.28350 1.42489 1.22746 0.85336 0.79367 0.79234 0.77389 1.20115 1.22216 1.17615 1.21984 0.97421 1.00817 0.96347 1.22147 0.89508 0.98766 0.92000 0.87812 0.90721 0.91846 0.73843 0.83620 0.83296 0.84765 0.85319 0.90091 0.90751 0.91040 0.92626 0.89990 0.92352 0.90968 0.95932 0.95981 0.80104 0.93308 0.91683 0.88421 0.87016 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 11.03 127.77 1.41 1.65 16 2 N -1.12 -7.41 6.08 -206.53 -1.25 -8.67 16 3 S 2.64 29.51 5.46 -56.49 -0.31 29.21 16 4 O -0.98 -17.23 17.73 -127.65 -2.26 -19.49 16 5 O -0.99 -17.77 18.08 -127.65 -2.31 -20.08 16 6 C -0.60 -5.55 5.31 71.98 0.38 -5.16 16 7 C -0.14 -1.49 4.05 29.85 0.12 -1.37 16 8 C 0.52 9.33 7.70 87.66 0.67 10.00 16 9 O -0.58 -14.90 15.39 -3.03 -0.05 -14.94 16 10 N -0.61 -9.86 2.97 -818.81 -2.43 -12.29 16 11 C 0.11 2.17 6.42 86.36 0.55 2.73 16 12 C -0.13 -2.69 5.16 30.78 0.16 -2.53 16 13 C -0.08 -1.46 2.15 -10.66 -0.02 -1.48 16 14 C -0.11 -2.93 4.80 30.60 0.15 -2.78 16 15 C 0.15 5.53 6.02 86.38 0.52 6.05 16 16 N -0.76 -35.88 5.41 -343.46 -1.86 -37.74 16 17 C -0.24 -13.94 10.47 84.03 0.88 -13.06 16 18 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 19 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 20 N -0.98 -63.83 13.97 21.65 0.30 -63.52 16 21 Si 0.96 45.65 27.74 68.60 1.90 47.55 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.25 -10.75 6.52 99.48 0.65 -10.11 16 25 C -0.13 -1.68 5.37 30.69 0.16 -1.51 16 26 C 0.10 0.99 6.34 86.38 0.55 1.53 16 27 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.07 0.08 7.73 -2.39 -0.02 0.06 16 29 H 0.06 0.32 8.04 -2.38 -0.02 0.31 16 30 H 0.43 1.68 8.92 -96.75 -0.86 0.81 16 31 H 0.15 1.28 8.10 -2.39 -0.02 1.26 16 32 H 0.15 1.10 7.73 -2.39 -0.02 1.08 16 33 H 0.13 0.73 7.94 -2.39 -0.02 0.71 16 34 H 0.13 0.87 7.69 -2.39 -0.02 0.85 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.70 7.00 -2.39 -0.02 1.68 16 37 H 0.07 1.71 6.52 -2.39 -0.02 1.69 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.02 0.84 6.53 -2.39 -0.02 0.83 16 44 H 0.37 16.26 5.53 -92.70 -0.51 15.75 16 45 H 0.26 15.89 8.31 -92.70 -0.77 15.11 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 48 H 0.11 0.54 5.93 -2.39 -0.01 0.53 16 49 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -87.43 399.35 -2.74 -90.17 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -0.48 Total: 19.26 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 6.00 Total: -9.46 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -5.24 Total: -122.22 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -4.62 Total: -54.51 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Atomic # 16 Polarization: 29.51 SS G_CDS: -0.31 Total: 29.21 kcal Total: -87.43 -2.74 -90.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666211666.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.508 kcal (2) G-P(sol) polarization free energy of solvation -87.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds