Wall clock time and date at job start Wed Apr 1 2020 04:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48497 * 109.47500 * 240.00094 * 3 2 1 5 5 H 1.48501 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47221 * 119.99692 * 3 2 1 7 7 C 1.38814 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99797 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99753 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47330 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.46860 * 64.99786 * 11 10 9 13 13 N 1.46500 * 109.47274 * 305.00240 * 11 10 9 14 14 C 1.34773 * 120.00432 * 154.99457 * 13 11 10 15 15 O 1.21353 * 120.00047 * 0.02562 * 14 13 11 16 16 C 1.49454 * 120.00135 * 179.72278 * 14 13 11 17 17 O 1.21343 * 119.99752 * 0.28157 * 16 14 13 18 18 N 1.34777 * 120.00164 * 180.27489 * 16 14 13 19 19 C 1.46499 * 120.00065 * 180.02562 * 18 16 14 20 20 C 1.53003 * 109.46671 * 180.02562 * 19 18 16 21 21 F 1.39897 * 109.47083 * 299.99719 * 20 19 18 22 22 F 1.39892 * 109.47207 * 60.00327 * 20 19 18 23 23 C 1.52999 * 109.47579 * 185.00064 * 11 10 9 24 24 C 1.52998 * 109.46921 * 300.00128 * 23 11 10 25 25 C 1.53001 * 109.47229 * 179.97438 * 24 23 11 26 26 C 1.53002 * 109.46745 * 59.99828 * 25 24 23 27 27 C 1.52998 * 109.47397 * 300.00069 * 26 25 24 28 28 C 1.52995 * 109.47259 * 180.02562 * 23 11 10 29 29 H 0.96993 * 119.99921 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00610 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47305 * 60.00040 * 10 9 7 32 32 H 1.09007 * 109.47058 * 299.99842 * 10 9 7 33 33 H 0.97001 * 119.99454 * 335.00192 * 13 11 10 34 34 H 0.97000 * 119.99555 * 0.02562 * 18 16 14 35 35 H 1.08994 * 109.46952 * 300.00262 * 19 18 16 36 36 H 1.08992 * 109.46844 * 60.00609 * 19 18 16 37 37 H 1.09005 * 109.46837 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.46828 * 59.99823 * 23 11 10 39 39 H 1.09002 * 109.47122 * 299.99516 * 24 23 11 40 40 H 1.09002 * 109.47259 * 59.99718 * 24 23 11 41 41 H 1.09002 * 109.46839 * 299.99891 * 25 24 23 42 42 H 1.08995 * 109.47392 * 179.97438 * 25 24 23 43 43 H 1.09001 * 109.46762 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.47400 * 60.00407 * 26 25 24 45 45 H 1.09002 * 109.47122 * 300.00509 * 27 26 25 46 46 H 1.09002 * 109.47259 * 180.02562 * 27 26 25 47 47 H 1.09003 * 109.46965 * 299.99915 * 28 23 11 48 48 H 1.09002 * 109.47452 * 60.00075 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 6 1.0641 -4.8197 -0.0044 12 1 0.4982 -4.8126 -0.9361 13 7 0.1441 -4.6774 1.1268 14 6 -1.0803 -5.2381 1.0743 15 8 -1.4207 -5.8614 0.0902 16 6 -2.0165 -5.0982 2.2309 17 8 -1.6761 -4.4753 3.2150 18 7 -3.2389 -5.6636 2.1807 19 6 -4.1568 -5.5259 3.3141 20 6 -5.4650 -6.2557 3.0025 21 9 -6.0486 -5.6989 1.8595 22 9 -5.2009 -7.6110 2.7783 23 6 1.8248 -6.1413 0.1201 24 6 2.7856 -6.2899 -1.0613 25 6 3.5469 -7.6112 -0.9364 26 6 2.5530 -8.7745 -0.9378 27 6 1.5922 -8.6258 0.2436 28 6 0.8307 -7.3042 0.1178 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6849 -3.7153 0.8872 32 1 2.6849 -3.7136 -0.8928 33 1 0.4162 -4.1794 1.9135 34 1 -3.5109 -6.1617 1.3940 35 1 -3.7022 -5.9600 4.2046 36 1 -4.3622 -4.4699 3.4890 37 1 -6.1481 -6.1529 3.8456 38 1 2.3907 -6.1483 1.0517 39 1 2.2197 -6.2829 -1.9929 40 1 3.4939 -5.4614 -1.0601 41 1 4.1128 -7.6179 -0.0049 42 1 4.2310 -7.7174 -1.7783 43 1 3.0953 -9.7158 -0.8484 44 1 1.9871 -8.7678 -1.8694 45 1 2.1581 -8.6324 1.1752 46 1 0.8844 -9.4548 0.2429 47 1 0.1459 -7.1985 0.9593 48 1 0.2652 -7.2970 -0.8140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667135174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:58 Heat of formation + Delta-G solvation = -182.883526 kcal Electronic energy + Delta-G solvation = -31875.287823 eV Core-core repulsion = 27214.281088 eV Total energy + Delta-G solvation = -4661.006735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.36061 -47.35010 -40.70924 -39.24342 -37.83786 -35.94867 -35.21397 -33.61209 -31.64818 -30.66915 -30.49142 -30.09427 -27.24958 -25.14265 -23.79324 -22.84385 -22.45871 -21.73112 -20.74298 -20.13685 -19.71701 -18.69994 -17.91101 -17.77101 -17.13741 -16.65201 -16.45103 -16.08676 -15.55672 -15.40238 -14.93531 -14.57043 -14.38976 -14.18682 -14.08251 -13.94638 -13.79885 -13.70665 -13.63997 -13.25570 -13.04738 -12.91921 -12.82187 -12.38629 -12.10274 -11.95167 -11.73634 -11.58499 -11.49873 -11.28764 -11.00813 -10.87852 -10.83684 -10.68595 -10.46047 -10.21544 -10.08934 -9.82208 -9.72786 -9.53379 -9.46002 -8.91539 -8.74682 -6.96609 -5.77421 -3.07733 1.55284 2.31919 3.26405 3.36009 3.43813 3.48116 3.49323 3.64114 3.75829 4.14655 4.36060 4.54111 4.59404 4.74680 4.82939 4.86762 5.07785 5.12308 5.16571 5.32644 5.39413 5.52921 5.53517 5.59117 5.62368 5.71540 5.73004 5.88294 5.90109 5.95834 6.07137 6.13115 6.21176 6.26719 6.29254 6.37121 6.39800 6.47005 6.59755 6.63727 6.78053 6.93547 7.50627 7.67600 7.82430 8.20690 8.39860 9.51605 10.06509 10.41405 11.44788 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.006650 B = 0.003908 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4209.569254 B = 7162.580826 C =10869.957580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.144 3.856 11 C 0.140 3.860 12 H 0.092 0.908 13 N -0.674 5.674 14 C 0.510 3.490 15 O -0.523 6.523 16 C 0.513 3.487 17 O -0.510 6.510 18 N -0.706 5.706 19 C 0.068 3.932 20 C 0.255 3.745 21 F -0.198 7.198 22 F -0.201 7.201 23 C -0.092 4.092 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.106 4.106 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.026 0.974 32 H 0.040 0.960 33 H 0.416 0.584 34 H 0.417 0.583 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.129 0.871 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -18.880 5.434 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.016 3.984 11 C 0.036 3.964 12 H 0.110 0.890 13 N -0.326 5.326 14 C 0.289 3.711 15 O -0.400 6.400 16 C 0.294 3.706 17 O -0.383 6.383 18 N -0.362 5.362 19 C -0.056 4.056 20 C 0.201 3.799 21 F -0.179 7.179 22 F -0.182 7.182 23 C -0.112 4.112 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.157 4.157 28 C -0.143 4.143 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.253 0.747 34 H 0.254 0.746 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.244 -18.735 5.416 20.195 hybrid contribution 0.010 0.992 -0.019 0.992 sum -5.233 -17.743 5.397 19.269 Atomic orbital electron populations 1.69655 1.05136 1.25841 1.57175 1.24749 0.95484 0.97719 1.02685 0.86264 0.78515 0.83510 0.77832 1.21252 1.21707 1.21236 1.19149 0.90985 0.84021 1.43430 0.91142 1.42338 1.05944 0.99741 1.89607 1.21029 0.93061 0.85107 0.99181 1.21511 0.90566 0.94915 0.89409 0.88999 1.45770 1.13238 1.52256 1.21316 1.19717 0.83209 0.80854 0.87275 1.90754 1.75898 1.40636 1.32663 1.20361 0.82658 0.79458 0.88169 1.90796 1.75661 1.38863 1.33027 1.45453 1.14603 1.55672 1.20503 1.22599 0.88277 1.03373 0.91397 1.22232 0.94971 0.75559 0.87136 1.93048 1.85588 1.84993 1.54320 1.93027 1.95062 1.34371 1.95742 1.21535 0.96425 0.93938 0.99341 1.21603 0.98127 0.97427 0.98064 1.21513 0.97597 0.94756 1.01558 1.21536 0.97425 0.97842 0.98818 1.21567 0.98115 0.97818 0.98189 1.21639 0.96931 0.93046 1.02713 0.93417 0.78071 0.95668 0.94255 0.74705 0.74573 0.87874 0.87646 0.85368 0.91010 0.91688 0.91048 0.92174 0.92195 0.92638 0.92070 0.92504 0.92521 0.92646 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.06 5.43 -59.91 -0.33 -18.39 16 10 C 0.14 2.74 5.31 -4.04 -0.02 2.72 16 11 C 0.14 2.27 2.00 -67.93 -0.14 2.14 16 12 H 0.09 1.66 7.58 -51.92 -0.39 1.26 16 13 N -0.67 -11.09 4.40 -54.23 -0.24 -11.33 16 14 C 0.51 8.25 6.25 -11.59 -0.07 8.18 16 15 O -0.52 -8.87 13.60 5.49 0.07 -8.80 16 16 C 0.51 7.74 7.89 -11.58 -0.09 7.64 16 17 O -0.51 -8.77 16.48 5.50 0.09 -8.68 16 18 N -0.71 -8.38 5.41 -60.73 -0.33 -8.71 16 19 C 0.07 0.57 5.91 -4.04 -0.02 0.55 16 20 C 0.26 1.72 5.42 37.16 0.20 1.92 16 21 F -0.20 -1.90 17.20 2.25 0.04 -1.86 16 22 F -0.20 -1.76 17.20 2.25 0.04 -1.73 16 23 C -0.09 -1.23 1.96 -90.62 -0.18 -1.40 16 24 C -0.11 -1.38 4.85 -26.73 -0.13 -1.51 16 25 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 26 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16 27 C -0.12 -1.31 5.93 -26.71 -0.16 -1.47 16 28 C -0.11 -1.38 3.73 -26.71 -0.10 -1.48 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.39 10.24 7.33 -40.82 -0.30 9.94 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.74 6.71 -51.92 -0.35 0.39 16 33 H 0.42 7.14 8.07 -40.82 -0.33 6.81 16 34 H 0.42 4.84 7.83 -40.82 -0.32 4.52 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.88 6.54 -51.93 -0.34 0.54 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.78 5.77 -51.93 -0.30 0.48 16 48 H 0.07 1.04 7.53 -51.93 -0.39 0.65 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -32.78 391.43 -7.66 -40.44 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -7.34 Total: 15.99 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -1.27 Total: 7.30 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -0.17 Total: -65.90 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.17 Total: -17.47 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.08 Total: -3.59 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.78 -7.66 -40.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667135174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.441 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds