Wall clock time and date at job start Wed Apr 1 2020 04:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48497 * 109.47500 * 240.00094 * 3 2 1 5 5 H 1.48501 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47221 * 119.99692 * 3 2 1 7 7 C 1.38814 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99797 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99753 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47330 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.46860 * 64.99786 * 11 10 9 13 13 N 1.46500 * 109.47274 * 305.00240 * 11 10 9 14 14 C 1.34773 * 120.00432 * 154.99457 * 13 11 10 15 15 O 1.21353 * 120.00047 * 0.02562 * 14 13 11 16 16 C 1.49454 * 120.00135 * 179.72278 * 14 13 11 17 17 O 1.21343 * 119.99752 * 0.28157 * 16 14 13 18 18 N 1.34777 * 120.00164 * 180.27489 * 16 14 13 19 19 C 1.46499 * 120.00065 * 180.02562 * 18 16 14 20 20 C 1.53003 * 109.46671 * 180.02562 * 19 18 16 21 21 F 1.39897 * 109.47083 * 299.99719 * 20 19 18 22 22 F 1.39892 * 109.47207 * 60.00327 * 20 19 18 23 23 C 1.52999 * 109.47579 * 185.00064 * 11 10 9 24 24 C 1.52998 * 109.46921 * 300.00128 * 23 11 10 25 25 C 1.53001 * 109.47229 * 179.97438 * 24 23 11 26 26 C 1.53002 * 109.46745 * 59.99828 * 25 24 23 27 27 C 1.52998 * 109.47397 * 300.00069 * 26 25 24 28 28 C 1.52995 * 109.47259 * 180.02562 * 23 11 10 29 29 H 0.96993 * 119.99921 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00610 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47305 * 60.00040 * 10 9 7 32 32 H 1.09007 * 109.47058 * 299.99842 * 10 9 7 33 33 H 0.97001 * 119.99454 * 335.00192 * 13 11 10 34 34 H 0.97000 * 119.99555 * 0.02562 * 18 16 14 35 35 H 1.08994 * 109.46952 * 300.00262 * 19 18 16 36 36 H 1.08992 * 109.46844 * 60.00609 * 19 18 16 37 37 H 1.09005 * 109.46837 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.46828 * 59.99823 * 23 11 10 39 39 H 1.09002 * 109.47122 * 299.99516 * 24 23 11 40 40 H 1.09002 * 109.47259 * 59.99718 * 24 23 11 41 41 H 1.09002 * 109.46839 * 299.99891 * 25 24 23 42 42 H 1.08995 * 109.47392 * 179.97438 * 25 24 23 43 43 H 1.09001 * 109.46762 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.47400 * 60.00407 * 26 25 24 45 45 H 1.09002 * 109.47122 * 300.00509 * 27 26 25 46 46 H 1.09002 * 109.47259 * 180.02562 * 27 26 25 47 47 H 1.09003 * 109.46965 * 299.99915 * 28 23 11 48 48 H 1.09002 * 109.47452 * 60.00075 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 6 1.0641 -4.8197 -0.0044 12 1 0.4982 -4.8126 -0.9361 13 7 0.1441 -4.6774 1.1268 14 6 -1.0803 -5.2381 1.0743 15 8 -1.4207 -5.8614 0.0902 16 6 -2.0165 -5.0982 2.2309 17 8 -1.6761 -4.4753 3.2150 18 7 -3.2389 -5.6636 2.1807 19 6 -4.1568 -5.5259 3.3141 20 6 -5.4650 -6.2557 3.0025 21 9 -6.0486 -5.6989 1.8595 22 9 -5.2009 -7.6110 2.7783 23 6 1.8248 -6.1413 0.1201 24 6 2.7856 -6.2899 -1.0613 25 6 3.5469 -7.6112 -0.9364 26 6 2.5530 -8.7745 -0.9378 27 6 1.5922 -8.6258 0.2436 28 6 0.8307 -7.3042 0.1178 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6849 -3.7153 0.8872 32 1 2.6849 -3.7136 -0.8928 33 1 0.4162 -4.1794 1.9135 34 1 -3.5109 -6.1617 1.3940 35 1 -3.7022 -5.9600 4.2046 36 1 -4.3622 -4.4699 3.4890 37 1 -6.1481 -6.1529 3.8456 38 1 2.3907 -6.1483 1.0517 39 1 2.2197 -6.2829 -1.9929 40 1 3.4939 -5.4614 -1.0601 41 1 4.1128 -7.6179 -0.0049 42 1 4.2310 -7.7174 -1.7783 43 1 3.0953 -9.7158 -0.8484 44 1 1.9871 -8.7678 -1.8694 45 1 2.1581 -8.6324 1.1752 46 1 0.8844 -9.4548 0.2429 47 1 0.1459 -7.1985 0.9593 48 1 0.2652 -7.2970 -0.8140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667135174.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:57 Heat of formation + Delta-G solvation = -206.117701 kcal Electronic energy + Delta-G solvation = -31876.295332 eV Core-core repulsion = 27214.281088 eV Total energy + Delta-G solvation = -4662.014244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.99635 -48.00268 -41.96113 -40.39941 -38.99685 -37.33354 -36.35046 -35.31378 -33.17055 -32.14892 -31.54127 -30.90468 -28.73902 -26.45078 -25.32454 -23.92769 -23.40358 -22.98241 -21.89646 -21.42741 -20.69955 -19.92836 -19.07139 -18.65670 -18.41949 -17.80611 -17.36805 -17.27108 -16.81612 -16.61388 -16.27115 -15.91809 -15.46326 -15.26397 -15.17688 -15.06136 -14.88142 -14.84233 -14.80244 -14.50721 -14.37056 -13.91625 -13.83930 -13.46959 -13.27677 -13.17716 -12.92582 -12.88388 -12.76984 -12.68641 -12.45211 -12.14719 -12.12895 -11.96123 -11.85957 -11.78280 -11.39612 -11.17254 -10.97413 -10.84456 -10.69092 -10.53856 -10.05746 -9.01730 -7.94334 -5.24277 0.29689 1.21606 1.47943 1.50926 1.56834 2.10188 2.49505 2.56714 2.67467 3.26607 3.34734 3.40732 3.54215 3.56218 3.80677 3.86551 3.87507 4.07487 4.14555 4.26186 4.43743 4.45144 4.46955 4.48876 4.55056 4.64825 4.68591 4.71376 4.78579 4.87794 4.92305 5.00814 5.12866 5.19543 5.23773 5.30795 5.34064 5.40062 5.42204 5.49602 5.51706 5.65159 5.78193 6.25224 6.25849 6.61256 6.90197 7.33040 8.05917 8.29154 9.28679 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.006650 B = 0.003908 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4209.569254 B = 7162.580826 C =10869.957580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.081 0.919 9 N -0.744 5.744 10 C 0.146 3.854 11 C 0.150 3.850 12 H 0.070 0.930 13 N -0.677 5.677 14 C 0.506 3.494 15 O -0.534 6.534 16 C 0.513 3.487 17 O -0.536 6.536 18 N -0.696 5.696 19 C 0.059 3.941 20 C 0.258 3.742 21 F -0.216 7.216 22 F -0.212 7.212 23 C -0.083 4.083 24 C -0.114 4.114 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.116 4.116 28 C -0.099 4.099 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.413 0.587 34 H 0.418 0.582 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.181 0.819 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.041 0.959 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 -20.155 6.137 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.099 0.901 9 N -0.387 5.387 10 C 0.019 3.981 11 C 0.046 3.954 12 H 0.089 0.911 13 N -0.327 5.327 14 C 0.286 3.714 15 O -0.412 6.412 16 C 0.293 3.707 17 O -0.412 6.412 18 N -0.350 5.350 19 C -0.064 4.064 20 C 0.204 3.796 21 F -0.198 7.198 22 F -0.194 7.194 23 C -0.103 4.103 24 C -0.152 4.152 25 C -0.150 4.150 26 C -0.154 4.154 27 C -0.153 4.153 28 C -0.137 4.137 29 H 0.058 0.942 30 H 0.204 0.796 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.249 0.751 34 H 0.255 0.745 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.198 0.802 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.336 -20.065 6.111 21.419 hybrid contribution -0.288 1.311 -0.249 1.365 sum -4.624 -18.754 5.862 20.186 Atomic orbital electron populations 1.69828 1.06747 1.26054 1.59354 1.25568 0.96277 1.01156 1.03567 0.85211 0.77146 0.79131 0.78240 1.20318 1.22507 1.20262 1.19604 0.91631 0.85086 1.41396 0.90146 1.42526 1.05562 1.01055 1.89566 1.21174 0.93439 0.83771 0.99690 1.21380 0.89950 0.95529 0.88560 0.91142 1.45783 1.13602 1.52307 1.21056 1.20006 0.83251 0.80477 0.87644 1.90741 1.76081 1.41149 1.33232 1.20133 0.83428 0.79740 0.87385 1.90780 1.76349 1.40420 1.33668 1.45522 1.13924 1.54085 1.21486 1.22964 0.88541 1.04261 0.90656 1.22677 0.94784 0.74323 0.87793 1.93014 1.85770 1.85264 1.55715 1.93004 1.95182 1.35338 1.95872 1.21469 0.96375 0.92119 1.00317 1.21603 0.97794 0.98760 0.97004 1.21497 0.97575 0.93430 1.02504 1.21532 0.97204 0.98619 0.98069 1.21545 0.98296 0.96423 0.99053 1.21529 0.96689 0.94315 1.01141 0.94157 0.79587 0.94614 0.93375 0.75118 0.74454 0.86221 0.87261 0.80191 0.90268 0.92435 0.91287 0.91468 0.90912 0.90786 0.92511 0.91776 0.91927 0.93997 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 3 Si 0.97 46.17 29.55 68.60 2.03 48.19 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.25 -13.53 9.99 84.03 0.84 -12.69 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.74 -37.24 5.43 -343.44 -1.87 -39.11 16 10 C 0.15 5.53 5.31 86.38 0.46 5.99 16 11 C 0.15 4.95 2.00 44.99 0.09 5.04 16 12 H 0.07 2.64 7.58 -2.38 -0.02 2.62 16 13 N -0.68 -22.91 4.40 -443.86 -1.95 -24.86 16 14 C 0.51 16.90 6.25 87.27 0.55 17.44 16 15 O -0.53 -18.73 13.60 -3.26 -0.04 -18.77 16 16 C 0.51 15.75 7.89 87.27 0.69 16.44 16 17 O -0.54 -18.71 16.48 -3.23 -0.05 -18.77 16 18 N -0.70 -16.43 5.41 -464.43 -2.51 -18.94 16 19 C 0.06 0.92 5.91 86.38 0.51 1.43 16 20 C 0.26 2.97 5.42 71.98 0.39 3.36 16 21 F -0.22 -3.93 17.20 44.97 0.77 -3.15 16 22 F -0.21 -3.42 17.20 44.97 0.77 -2.65 16 23 C -0.08 -2.15 1.96 -10.80 -0.02 -2.18 16 24 C -0.11 -2.62 4.85 30.59 0.15 -2.47 16 25 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 26 C -0.12 -2.09 5.92 30.59 0.18 -1.91 16 27 C -0.12 -2.34 5.93 30.61 0.18 -2.15 16 28 C -0.10 -2.55 3.73 30.61 0.11 -2.44 16 29 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.37 20.39 7.33 -92.71 -0.68 19.71 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.78 6.71 -2.38 -0.02 1.76 16 33 H 0.41 14.59 8.07 -92.71 -0.75 13.84 16 34 H 0.42 9.74 7.83 -92.71 -0.73 9.01 16 35 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.18 0.29 8.14 -2.38 -0.02 0.27 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.62 6.54 -2.39 -0.02 1.60 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.04 1.18 5.77 -2.39 -0.01 1.17 16 48 H 0.05 1.57 7.53 -2.39 -0.02 1.56 16 Total: -1.00 -71.45 391.43 1.06 -70.39 By element: Atomic # 1 Polarization: 48.33 SS G_CDS: -1.14 Total: 47.19 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 4.77 Total: 20.24 kcal Atomic # 7 Polarization: -136.62 SS G_CDS: -6.05 Total: -142.67 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.10 Total: -37.54 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 1.55 Total: -5.80 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -71.45 1.06 -70.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667135174.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.730 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds