Wall clock time and date at job start Wed Apr 1 2020 04:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86789 * 120.00125 * 2 1 4 4 H 1.48503 * 109.47574 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47299 * 299.99895 * 3 2 1 6 6 H 1.48499 * 109.47394 * 59.99847 * 3 2 1 7 7 C 1.38947 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99938 * 179.97438 * 7 2 1 9 9 N 1.37106 * 120.00467 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00034 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00092 * 4.92936 * 10 9 7 12 12 C 1.50701 * 119.99720 * 184.93101 * 10 9 7 13 13 N 1.46903 * 109.46769 * 184.96868 * 12 10 9 14 14 C 1.46901 * 110.99637 * 185.48623 * 13 12 10 15 15 C 1.53000 * 115.55110 * 294.58334 * 14 13 12 16 16 N 1.46500 * 109.47287 * 276.38806 * 15 14 13 17 17 C 1.34774 * 120.00043 * 184.99014 * 16 15 14 18 18 O 1.21601 * 120.00064 * 4.97499 * 17 16 15 19 19 C 1.47430 * 119.99801 * 184.96688 * 17 16 15 20 20 C 1.41202 * 126.44104 * 354.94518 * 19 17 16 21 21 N 1.30292 * 108.02997 * 179.97438 * 20 19 17 22 22 N 1.40512 * 109.01565 * 359.92629 * 21 20 19 23 23 C 1.34018 * 108.17329 * 0.15390 * 22 21 20 24 24 C 1.51383 * 110.34571 * 179.75910 * 23 22 21 25 25 C 1.54578 * 104.14507 * 343.53877 * 24 23 22 26 26 C 1.47253 * 140.81038 * 180.29145 * 22 21 20 27 27 C 1.53004 * 117.49805 * 80.25810 * 14 13 12 28 28 C 1.52999 * 117.49664 * 148.91553 * 14 13 12 29 29 H 0.96997 * 120.00350 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99699 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.46927 * 64.97133 * 12 10 9 32 32 H 1.08998 * 109.46755 * 304.96622 * 12 10 9 33 33 H 1.00900 * 111.00155 * 309.44203 * 13 12 10 34 34 H 1.09004 * 109.46818 * 156.39074 * 15 14 13 35 35 H 1.08995 * 109.46874 * 36.39025 * 15 14 13 36 36 H 0.97002 * 119.99873 * 4.99216 * 16 15 14 37 37 H 1.07998 * 125.98383 * 359.92936 * 20 19 17 38 38 H 1.09004 * 110.50083 * 224.87469 * 24 23 22 39 39 H 1.09006 * 110.49849 * 102.19938 * 24 23 22 40 40 H 1.09006 * 110.98683 * 266.93427 * 25 24 23 41 41 H 1.08995 * 111.02348 * 143.12997 * 25 24 23 42 42 H 1.08995 * 110.23459 * 316.01132 * 26 22 21 43 43 H 1.09002 * 110.23210 * 77.88870 * 26 22 21 44 44 H 1.09003 * 117.49612 * 215.00557 * 27 14 13 45 45 H 1.08999 * 117.49329 * 0.02562 * 27 14 13 46 46 H 1.09003 * 117.50027 * 359.97206 * 28 14 13 47 47 H 1.08998 * 117.50276 * 144.97291 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2066 -3.5598 0.0928 12 6 1.2479 -4.8606 -0.1106 13 7 2.1881 -5.9802 0.0330 14 6 1.5158 -7.2654 -0.2002 15 6 0.4417 -7.6432 0.8218 16 7 1.0738 -8.2675 1.9866 17 6 0.3119 -8.7752 2.9756 18 8 -0.8985 -8.7969 2.8605 19 6 0.9458 -9.3043 4.1969 20 6 2.3317 -9.4382 4.4320 21 7 2.4919 -9.9419 5.6229 22 7 1.2303 -10.1520 6.2047 23 6 0.2952 -9.7626 5.3271 24 6 -1.0884 -9.9739 5.9038 25 6 -0.8600 -10.9381 7.0902 26 6 0.6146 -10.6508 7.4458 27 6 1.2906 -7.6916 -1.6523 28 6 2.3485 -8.3992 -0.8018 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3907 0.0005 31 1 0.7615 -4.9173 -1.0843 32 1 0.4948 -4.9154 0.6755 33 1 2.9795 -5.8690 -0.5830 34 1 -0.2595 -8.3446 0.3694 35 1 -0.0928 -6.7465 1.1354 36 1 2.0409 -8.3154 2.0461 37 1 3.1207 -9.1707 3.7447 38 1 -1.7453 -10.4296 5.1628 39 1 -1.5042 -9.0292 6.2544 40 1 -0.9923 -11.9751 6.7816 41 1 -1.5175 -10.6941 7.9245 42 1 1.1091 -11.5662 7.7705 43 1 0.6744 -9.8932 8.2272 44 1 0.3770 -8.2411 -1.8795 45 1 1.6416 -7.0186 -2.4345 46 1 3.3950 -8.1914 -1.0251 47 1 2.1313 -9.4143 -0.4693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670793672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:31 Heat of formation + Delta-G solvation = 45.766979 kcal Electronic energy + Delta-G solvation = -29515.393138 eV Core-core repulsion = 25314.990620 eV Total energy + Delta-G solvation = -4200.402518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09777 -39.62952 -38.57520 -37.69906 -36.67990 -34.15574 -33.92020 -32.56031 -31.37447 -31.18886 -29.78565 -28.34123 -26.62958 -26.29872 -24.06561 -22.85287 -22.58184 -22.13180 -20.70691 -20.05737 -19.40358 -19.21411 -17.89482 -17.64909 -16.86465 -16.52853 -15.98631 -15.47057 -15.28098 -14.94241 -14.87387 -14.63146 -14.44921 -14.23677 -14.06714 -13.99605 -13.94373 -13.58062 -13.37472 -13.18538 -12.63653 -12.51449 -12.42484 -12.10011 -12.08591 -11.69934 -11.68753 -11.60100 -11.46759 -11.17593 -11.10105 -10.78487 -10.34512 -10.29174 -10.21042 -9.82146 -9.65017 -9.52642 -9.08101 -8.72854 -8.43506 -8.08657 -7.96335 -6.41642 -3.82556 1.31773 1.84864 1.98456 3.10896 3.16444 3.27184 3.34255 3.45037 3.58900 3.73604 3.88808 4.02631 4.10457 4.18932 4.27406 4.28757 4.53247 4.60397 4.72200 4.83399 4.88436 4.93296 5.02334 5.05222 5.11550 5.24312 5.26049 5.38540 5.42426 5.50429 5.53957 5.63266 5.68769 5.79015 5.81580 5.89249 6.00483 6.03772 6.17830 6.26625 6.35724 6.49519 7.16065 7.34876 7.55306 7.57861 7.65419 8.05698 8.33249 8.60311 9.17270 9.53713 10.03954 10.76047 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.002156 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.077458 B =12983.793840 C =14194.480820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.587 6.587 12 C 0.050 3.950 13 N -0.629 5.629 14 C 0.037 3.963 15 C 0.170 3.830 16 N -0.715 5.715 17 C 0.595 3.405 18 O -0.554 6.554 19 C -0.279 4.279 20 C 0.088 3.912 21 N -0.276 5.276 22 N -0.385 5.385 23 C 0.138 3.862 24 C -0.071 4.071 25 C -0.133 4.133 26 C 0.125 3.875 27 C -0.206 4.206 28 C -0.165 4.165 29 H 0.271 0.729 30 H 0.393 0.607 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.356 0.644 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.197 0.803 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.408 -24.455 9.409 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.472 6.472 12 C -0.082 4.082 13 N -0.261 5.261 14 C -0.056 4.056 15 C 0.046 3.954 16 N -0.365 5.365 17 C 0.382 3.618 18 O -0.433 6.433 19 C -0.294 4.294 20 C -0.100 4.100 21 N -0.094 5.094 22 N -0.164 5.164 23 C 0.004 3.996 24 C -0.110 4.110 25 C -0.172 4.172 26 C 0.005 3.995 27 C -0.246 4.246 28 C -0.203 4.203 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.177 0.823 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.238 0.762 37 H 0.214 0.786 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.637 -24.745 11.148 27.269 hybrid contribution -0.237 1.286 -1.604 2.069 sum -2.874 -23.460 9.544 25.489 Atomic orbital electron populations 1.69621 1.05936 1.28099 1.50465 1.25275 0.95647 0.99760 0.97303 0.85797 0.79693 0.81121 0.77712 1.19223 1.20764 1.20720 1.19748 0.93365 0.82195 1.47552 0.87877 1.41853 1.09268 1.04582 1.64085 1.19775 0.88290 0.84739 0.84556 1.90517 1.14126 1.87004 1.55557 1.21687 0.95328 0.90330 1.00902 1.59951 1.08944 0.98060 1.59099 1.21881 0.99047 0.91917 0.92783 1.20680 0.92633 0.97769 0.84291 1.45613 1.10408 1.60092 1.20434 1.17188 0.86106 0.76799 0.81662 1.90747 1.13874 1.58140 1.80580 1.19461 0.92690 1.19964 0.97256 1.24135 0.95590 0.96327 0.93933 1.77230 0.98928 1.23322 1.09942 1.50118 1.04197 1.48008 1.14114 1.22484 0.92609 0.93967 0.90547 1.21017 0.91469 1.01312 0.97152 1.22875 0.93891 1.01169 0.99242 1.22475 0.92747 1.00973 0.83321 1.23648 1.01225 1.04706 0.95067 1.23149 0.97382 0.96701 1.03090 0.91882 0.77364 0.93230 0.89536 0.82271 0.90735 0.90678 0.76183 0.78622 0.87579 0.87866 0.89219 0.87624 0.88620 0.88826 0.88419 0.88433 0.88186 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.03 7.17 -52.49 -0.38 2.65 16 9 N -0.56 -14.31 5.28 -10.96 -0.06 -14.37 16 10 C 0.44 10.37 7.81 -10.99 -0.09 10.29 16 11 O -0.59 -15.76 15.62 5.55 0.09 -15.67 16 12 C 0.05 0.87 5.94 -4.97 -0.03 0.84 16 13 N -0.63 -9.74 6.43 -101.22 -0.65 -10.39 16 14 C 0.04 0.44 1.81 -131.60 -0.24 0.20 16 15 C 0.17 2.12 5.74 -4.04 -0.02 2.09 16 16 N -0.71 -8.53 5.46 -61.38 -0.34 -8.87 16 17 C 0.59 8.14 7.81 -12.52 -0.10 8.04 16 18 O -0.55 -9.13 16.88 5.28 0.09 -9.04 16 19 C -0.28 -3.44 6.13 -105.03 -0.64 -4.08 16 20 C 0.09 0.97 11.50 -17.08 -0.20 0.78 16 21 N -0.28 -3.38 12.64 30.82 0.39 -2.99 16 22 N -0.39 -4.00 4.81 -55.13 -0.27 -4.26 16 23 C 0.14 1.51 7.31 -81.31 -0.59 0.92 16 24 C -0.07 -0.51 6.86 -26.72 -0.18 -0.70 16 25 C -0.13 -0.50 7.18 -25.18 -0.18 -0.68 16 26 C 0.13 0.70 7.78 -2.91 -0.02 0.68 16 27 C -0.21 -2.15 10.02 -26.69 -0.27 -2.41 16 28 C -0.17 -1.60 9.87 -26.69 -0.26 -1.86 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 31 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.09 1.46 6.83 -51.93 -0.35 1.11 16 33 H 0.36 5.78 8.02 -39.29 -0.31 5.47 16 34 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 35 H 0.08 1.07 6.60 -51.93 -0.34 0.72 16 36 H 0.40 4.17 7.41 -40.82 -0.30 3.87 16 37 H 0.20 1.55 7.52 -52.49 -0.39 1.16 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.92 8.06 -51.93 -0.42 0.50 16 45 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -36.01 399.01 -8.69 -44.70 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -6.59 Total: 16.60 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -3.07 Total: 6.09 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -0.20 Total: -64.81 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.18 Total: -24.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.01 -8.69 -44.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670793672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.467 kcal (2) G-P(sol) polarization free energy of solvation -36.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds