Wall clock time and date at job start Wed Apr 1 2020 04:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86789 * 120.00125 * 2 1 4 4 H 1.48503 * 109.47574 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47299 * 299.99895 * 3 2 1 6 6 H 1.48499 * 109.47394 * 59.99847 * 3 2 1 7 7 C 1.38947 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99938 * 179.97438 * 7 2 1 9 9 N 1.37106 * 120.00467 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00034 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00092 * 4.92936 * 10 9 7 12 12 C 1.50701 * 119.99720 * 184.93101 * 10 9 7 13 13 N 1.46903 * 109.46769 * 184.96868 * 12 10 9 14 14 C 1.46901 * 110.99637 * 185.48623 * 13 12 10 15 15 C 1.53000 * 115.55110 * 294.58334 * 14 13 12 16 16 N 1.46500 * 109.47287 * 276.38806 * 15 14 13 17 17 C 1.34774 * 120.00043 * 184.99014 * 16 15 14 18 18 O 1.21601 * 120.00064 * 4.97499 * 17 16 15 19 19 C 1.47430 * 119.99801 * 184.96688 * 17 16 15 20 20 C 1.41202 * 126.44104 * 354.94518 * 19 17 16 21 21 N 1.30292 * 108.02997 * 179.97438 * 20 19 17 22 22 N 1.40512 * 109.01565 * 359.92629 * 21 20 19 23 23 C 1.34018 * 108.17329 * 0.15390 * 22 21 20 24 24 C 1.51383 * 110.34571 * 179.75910 * 23 22 21 25 25 C 1.54578 * 104.14507 * 343.53877 * 24 23 22 26 26 C 1.47253 * 140.81038 * 180.29145 * 22 21 20 27 27 C 1.53004 * 117.49805 * 80.25810 * 14 13 12 28 28 C 1.52999 * 117.49664 * 148.91553 * 14 13 12 29 29 H 0.96997 * 120.00350 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99699 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.46927 * 64.97133 * 12 10 9 32 32 H 1.08998 * 109.46755 * 304.96622 * 12 10 9 33 33 H 1.00900 * 111.00155 * 309.44203 * 13 12 10 34 34 H 1.09004 * 109.46818 * 156.39074 * 15 14 13 35 35 H 1.08995 * 109.46874 * 36.39025 * 15 14 13 36 36 H 0.97002 * 119.99873 * 4.99216 * 16 15 14 37 37 H 1.07998 * 125.98383 * 359.92936 * 20 19 17 38 38 H 1.09004 * 110.50083 * 224.87469 * 24 23 22 39 39 H 1.09006 * 110.49849 * 102.19938 * 24 23 22 40 40 H 1.09006 * 110.98683 * 266.93427 * 25 24 23 41 41 H 1.08995 * 111.02348 * 143.12997 * 25 24 23 42 42 H 1.08995 * 110.23459 * 316.01132 * 26 22 21 43 43 H 1.09002 * 110.23210 * 77.88870 * 26 22 21 44 44 H 1.09003 * 117.49612 * 215.00557 * 27 14 13 45 45 H 1.08999 * 117.49329 * 0.02562 * 27 14 13 46 46 H 1.09003 * 117.50027 * 359.97206 * 28 14 13 47 47 H 1.08998 * 117.50276 * 144.97291 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2066 -3.5598 0.0928 12 6 1.2479 -4.8606 -0.1106 13 7 2.1881 -5.9802 0.0330 14 6 1.5158 -7.2654 -0.2002 15 6 0.4417 -7.6432 0.8218 16 7 1.0738 -8.2675 1.9866 17 6 0.3119 -8.7752 2.9756 18 8 -0.8985 -8.7969 2.8605 19 6 0.9458 -9.3043 4.1969 20 6 2.3317 -9.4382 4.4320 21 7 2.4919 -9.9419 5.6229 22 7 1.2303 -10.1520 6.2047 23 6 0.2952 -9.7626 5.3271 24 6 -1.0884 -9.9739 5.9038 25 6 -0.8600 -10.9381 7.0902 26 6 0.6146 -10.6508 7.4458 27 6 1.2906 -7.6916 -1.6523 28 6 2.3485 -8.3992 -0.8018 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3907 0.0005 31 1 0.7615 -4.9173 -1.0843 32 1 0.4948 -4.9154 0.6755 33 1 2.9795 -5.8690 -0.5830 34 1 -0.2595 -8.3446 0.3694 35 1 -0.0928 -6.7465 1.1354 36 1 2.0409 -8.3154 2.0461 37 1 3.1207 -9.1707 3.7447 38 1 -1.7453 -10.4296 5.1628 39 1 -1.5042 -9.0292 6.2544 40 1 -0.9923 -11.9751 6.7816 41 1 -1.5175 -10.6941 7.9245 42 1 1.1091 -11.5662 7.7705 43 1 0.6744 -9.8932 8.2272 44 1 0.3770 -8.2411 -1.8795 45 1 1.6416 -7.0186 -2.4345 46 1 3.3950 -8.1914 -1.0251 47 1 2.1313 -9.4143 -0.4693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670793672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:30 Heat of formation + Delta-G solvation = 17.200500 kcal Electronic energy + Delta-G solvation = -29516.631874 eV Core-core repulsion = 25314.990620 eV Total energy + Delta-G solvation = -4201.641254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.85297 -40.73002 -40.08187 -39.05149 -37.29867 -36.04117 -35.09296 -33.89644 -33.20916 -32.12468 -30.44215 -29.12167 -28.24462 -27.21175 -25.87349 -23.67560 -23.27546 -22.84684 -21.44100 -21.18401 -20.97497 -20.28301 -19.91772 -18.53774 -17.95882 -17.46164 -17.06351 -16.89242 -16.52462 -16.38311 -15.89135 -15.78925 -15.69131 -15.47613 -15.30841 -14.90728 -14.66816 -14.58989 -14.28224 -14.15847 -14.08629 -13.74371 -13.54362 -13.43003 -13.04305 -12.92469 -12.85482 -12.51096 -12.41907 -12.38944 -12.12148 -12.11915 -12.03616 -11.79299 -11.52619 -11.21914 -10.88717 -10.36519 -10.35754 -10.10228 -10.03271 -9.59648 -9.27067 -8.47776 -5.96798 0.48935 1.10878 1.22722 1.35824 1.41273 1.55628 2.01565 2.16807 2.28013 2.47145 2.69657 3.05067 3.09027 3.19300 3.43428 3.47811 3.62930 3.65552 3.80347 3.89231 3.97809 4.03632 4.14728 4.28474 4.36292 4.48248 4.48529 4.53078 4.53252 4.61793 4.66632 4.77747 4.78565 4.83713 4.89282 4.98915 5.01417 5.07383 5.23476 5.37961 5.39965 5.50424 5.66829 5.86182 6.06087 6.35153 6.53278 6.57412 6.69979 7.10524 7.32491 7.53595 8.07335 8.69920 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.002156 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.077458 B =12983.793840 C =14194.480820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.623 6.623 12 C 0.066 3.934 13 N -0.637 5.637 14 C 0.022 3.978 15 C 0.174 3.826 16 N -0.706 5.706 17 C 0.593 3.407 18 O -0.589 6.589 19 C -0.310 4.310 20 C 0.090 3.910 21 N -0.308 5.308 22 N -0.386 5.386 23 C 0.129 3.871 24 C -0.075 4.075 25 C -0.115 4.115 26 C 0.111 3.889 27 C -0.198 4.198 28 C -0.145 4.145 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.352 0.648 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.411 0.589 37 H 0.218 0.782 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.138 0.862 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 -25.663 9.957 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.509 6.509 12 C -0.065 4.065 13 N -0.269 5.269 14 C -0.070 4.070 15 C 0.050 3.950 16 N -0.357 5.357 17 C 0.382 3.618 18 O -0.471 6.471 19 C -0.325 4.325 20 C -0.097 4.097 21 N -0.126 5.126 22 N -0.165 5.165 23 C -0.007 4.007 24 C -0.114 4.114 25 C -0.153 4.153 26 C -0.007 4.007 27 C -0.238 4.238 28 C -0.182 4.182 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.172 0.828 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.247 0.753 37 H 0.235 0.765 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.156 0.844 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.112 0.888 46 H 0.123 0.877 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.048 -25.983 11.706 28.660 hybrid contribution -0.112 1.582 -1.735 2.351 sum -3.160 -24.401 9.971 26.548 Atomic orbital electron populations 1.69684 1.06888 1.29283 1.50277 1.26077 0.96563 1.02529 0.96266 0.84852 0.78048 0.76998 0.78323 1.19682 1.19449 1.19747 1.19711 0.92704 0.83927 1.49851 0.90179 1.41936 1.09352 1.04779 1.64888 1.20781 0.88166 0.86068 0.82300 1.90484 1.16001 1.87853 1.56599 1.21488 0.94970 0.87923 1.02167 1.59912 1.08714 0.98750 1.59527 1.21793 1.00214 0.91112 0.93902 1.20605 0.92837 0.97071 0.84490 1.45561 1.10727 1.59346 1.20023 1.17423 0.85757 0.76414 0.82166 1.90713 1.15263 1.59830 1.81331 1.19566 0.93546 1.21836 0.97561 1.24485 0.95733 0.95522 0.93964 1.77127 1.00550 1.24364 1.10570 1.50548 1.03494 1.47297 1.15210 1.23105 0.94425 0.92806 0.90324 1.21192 0.89416 1.02474 0.98303 1.22927 0.92969 1.00790 0.98612 1.22954 0.93672 1.02003 0.82064 1.23686 1.02157 1.04445 0.93510 1.23239 0.97403 0.96492 1.01090 0.91277 0.77029 0.91318 0.88764 0.82778 0.89986 0.92783 0.75254 0.76533 0.88015 0.87494 0.88169 0.84434 0.87101 0.87498 0.86966 0.88783 0.87700 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.38 13.05 21.66 0.28 -50.09 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 3 Si 0.99 43.34 29.55 68.60 2.03 45.36 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 8 H 0.08 4.88 7.17 -2.91 -0.02 4.86 16 9 N -0.57 -29.88 5.28 -306.98 -1.62 -31.50 16 10 C 0.44 21.07 7.81 87.66 0.68 21.75 16 11 O -0.62 -34.25 15.62 -3.06 -0.05 -34.29 16 12 C 0.07 2.33 5.94 85.56 0.51 2.84 16 13 N -0.64 -19.43 6.43 -474.14 -3.05 -22.47 16 14 C 0.02 0.50 1.81 3.53 0.01 0.51 16 15 C 0.17 4.22 5.74 86.38 0.50 4.71 16 16 N -0.71 -16.61 5.46 -466.37 -2.55 -19.16 16 17 C 0.59 16.41 7.81 86.66 0.68 17.09 16 18 O -0.59 -19.77 16.88 -4.03 -0.07 -19.84 16 19 C -0.31 -7.70 6.13 -20.13 -0.12 -7.82 16 20 C 0.09 1.98 11.50 85.65 0.98 2.97 16 21 N -0.31 -7.44 12.64 -56.42 -0.71 -8.15 16 22 N -0.39 -7.71 4.81 -328.34 -1.58 -9.28 16 23 C 0.13 2.78 7.31 42.44 0.31 3.09 16 24 C -0.08 -1.01 6.86 30.60 0.21 -0.80 16 25 C -0.11 -0.56 7.18 31.60 0.23 -0.33 16 26 C 0.11 1.02 7.78 86.70 0.67 1.70 16 27 C -0.20 -3.69 10.02 30.62 0.31 -3.39 16 28 C -0.14 -2.46 9.87 30.62 0.30 -2.16 16 29 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 31 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 32 H 0.09 3.19 6.83 -2.39 -0.02 3.17 16 33 H 0.35 11.29 8.02 -89.69 -0.72 10.57 16 34 H 0.08 1.88 7.87 -2.38 -0.02 1.86 16 35 H 0.05 1.54 6.60 -2.39 -0.02 1.53 16 36 H 0.41 8.22 7.41 -92.71 -0.69 7.54 16 37 H 0.22 3.34 7.52 -2.91 -0.02 3.31 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 41 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.11 1.80 8.06 -2.39 -0.02 1.78 16 45 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -79.72 399.01 -1.87 -81.58 By element: Atomic # 1 Polarization: 47.36 SS G_CDS: -1.09 Total: 46.26 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 6.54 Total: 21.58 kcal Atomic # 7 Polarization: -131.43 SS G_CDS: -9.23 Total: -140.66 kcal Atomic # 8 Polarization: -54.02 SS G_CDS: -0.12 Total: -54.13 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -79.72 -1.87 -81.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670793672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.784 kcal (2) G-P(sol) polarization free energy of solvation -79.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds