Wall clock time and date at job start Wed Apr 1 2020 04:26:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31411 * 1
3 3 Si 1.86789 * 120.00125 * 2 1
4 4 H 1.48503 * 109.47574 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47299 * 299.99895 * 3 2 1
6 6 H 1.48499 * 109.47394 * 59.99847 * 3 2 1
7 7 C 1.38947 * 119.99614 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99938 * 179.97438 * 7 2 1
9 9 N 1.37106 * 120.00467 * 0.02562 * 7 2 1
10 10 C 1.34775 * 120.00034 * 180.02562 * 9 7 2
11 11 O 1.21290 * 120.00092 * 4.92936 * 10 9 7
12 12 C 1.50701 * 119.99720 * 184.93101 * 10 9 7
13 13 N 1.46903 * 109.46769 * 184.96868 * 12 10 9
14 14 C 1.46901 * 110.99637 * 185.48623 * 13 12 10
15 15 C 1.53000 * 115.55110 * 294.58334 * 14 13 12
16 16 N 1.46500 * 109.47287 * 276.38806 * 15 14 13
17 17 C 1.34774 * 120.00043 * 184.99014 * 16 15 14
18 18 O 1.21601 * 120.00064 * 4.97499 * 17 16 15
19 19 C 1.47430 * 119.99801 * 184.96688 * 17 16 15
20 20 C 1.41202 * 126.44104 * 354.94518 * 19 17 16
21 21 N 1.30292 * 108.02997 * 179.97438 * 20 19 17
22 22 N 1.40512 * 109.01565 * 359.92629 * 21 20 19
23 23 C 1.34018 * 108.17329 * 0.15390 * 22 21 20
24 24 C 1.51383 * 110.34571 * 179.75910 * 23 22 21
25 25 C 1.54578 * 104.14507 * 343.53877 * 24 23 22
26 26 C 1.47253 * 140.81038 * 180.29145 * 22 21 20
27 27 C 1.53004 * 117.49805 * 80.25810 * 14 13 12
28 28 C 1.52999 * 117.49664 * 148.91553 * 14 13 12
29 29 H 0.96997 * 120.00350 * 0.02562 * 1 2 3
30 30 H 0.96998 * 119.99699 * 359.97438 * 9 7 2
31 31 H 1.08993 * 109.46927 * 64.97133 * 12 10 9
32 32 H 1.08998 * 109.46755 * 304.96622 * 12 10 9
33 33 H 1.00900 * 111.00155 * 309.44203 * 13 12 10
34 34 H 1.09004 * 109.46818 * 156.39074 * 15 14 13
35 35 H 1.08995 * 109.46874 * 36.39025 * 15 14 13
36 36 H 0.97002 * 119.99873 * 4.99216 * 16 15 14
37 37 H 1.07998 * 125.98383 * 359.92936 * 20 19 17
38 38 H 1.09004 * 110.50083 * 224.87469 * 24 23 22
39 39 H 1.09006 * 110.49849 * 102.19938 * 24 23 22
40 40 H 1.09006 * 110.98683 * 266.93427 * 25 24 23
41 41 H 1.08995 * 111.02348 * 143.12997 * 25 24 23
42 42 H 1.08995 * 110.23459 * 316.01132 * 26 22 21
43 43 H 1.09002 * 110.23210 * 77.88870 * 26 22 21
44 44 H 1.09003 * 117.49612 * 215.00557 * 27 14 13
45 45 H 1.08999 * 117.49329 * 0.02562 * 27 14 13
46 46 H 1.09003 * 117.50027 * 359.97206 * 28 14 13
47 47 H 1.08998 * 117.50276 * 144.97291 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6176 0.0000
4 1 3.7081 1.3463 0.0006
5 1 1.8894 2.3964 -1.2125
6 1 1.8894 2.3964 1.2125
7 6 2.0088 -1.2034 0.0005
8 1 3.0888 -1.2034 0.0001
9 7 1.3233 -2.3907 0.0005
10 6 1.9971 -3.5579 0.0016
11 8 3.2066 -3.5598 0.0928
12 6 1.2479 -4.8606 -0.1106
13 7 2.1881 -5.9802 0.0330
14 6 1.5158 -7.2654 -0.2002
15 6 0.4417 -7.6432 0.8218
16 7 1.0738 -8.2675 1.9866
17 6 0.3119 -8.7752 2.9756
18 8 -0.8985 -8.7969 2.8605
19 6 0.9458 -9.3043 4.1969
20 6 2.3317 -9.4382 4.4320
21 7 2.4919 -9.9419 5.6229
22 7 1.2303 -10.1520 6.2047
23 6 0.2952 -9.7626 5.3271
24 6 -1.0884 -9.9739 5.9038
25 6 -0.8600 -10.9381 7.0902
26 6 0.6146 -10.6508 7.4458
27 6 1.2906 -7.6916 -1.6523
28 6 2.3485 -8.3992 -0.8018
29 1 -0.4850 0.8400 -0.0004
30 1 0.3533 -2.3907 0.0005
31 1 0.7615 -4.9173 -1.0843
32 1 0.4948 -4.9154 0.6755
33 1 2.9795 -5.8690 -0.5830
34 1 -0.2595 -8.3446 0.3694
35 1 -0.0928 -6.7465 1.1354
36 1 2.0409 -8.3154 2.0461
37 1 3.1207 -9.1707 3.7447
38 1 -1.7453 -10.4296 5.1628
39 1 -1.5042 -9.0292 6.2544
40 1 -0.9923 -11.9751 6.7816
41 1 -1.5175 -10.6941 7.9245
42 1 1.1091 -11.5662 7.7705
43 1 0.6744 -9.8932 8.2272
44 1 0.3770 -8.2411 -1.8795
45 1 1.6416 -7.0186 -2.4345
46 1 3.3950 -8.1914 -1.0251
47 1 2.1313 -9.4143 -0.4693
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001670793672.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:26:30
Heat of formation + Delta-G solvation = 17.200500 kcal
Electronic energy + Delta-G solvation = -29516.631874 eV
Core-core repulsion = 25314.990620 eV
Total energy + Delta-G solvation = -4201.641254 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.85297 -40.73002 -40.08187 -39.05149 -37.29867 -36.04117 -35.09296 -33.89644
-33.20916 -32.12468 -30.44215 -29.12167 -28.24462 -27.21175 -25.87349 -23.67560
-23.27546 -22.84684 -21.44100 -21.18401 -20.97497 -20.28301 -19.91772 -18.53774
-17.95882 -17.46164 -17.06351 -16.89242 -16.52462 -16.38311 -15.89135 -15.78925
-15.69131 -15.47613 -15.30841 -14.90728 -14.66816 -14.58989 -14.28224 -14.15847
-14.08629 -13.74371 -13.54362 -13.43003 -13.04305 -12.92469 -12.85482 -12.51096
-12.41907 -12.38944 -12.12148 -12.11915 -12.03616 -11.79299 -11.52619 -11.21914
-10.88717 -10.36519 -10.35754 -10.10228 -10.03271 -9.59648 -9.27067 -8.47776
-5.96798 0.48935 1.10878 1.22722 1.35824 1.41273 1.55628 2.01565
2.16807 2.28013 2.47145 2.69657 3.05067 3.09027 3.19300 3.43428
3.47811 3.62930 3.65552 3.80347 3.89231 3.97809 4.03632 4.14728
4.28474 4.36292 4.48248 4.48529 4.53078 4.53252 4.61793 4.66632
4.77747 4.78565 4.83713 4.89282 4.98915 5.01417 5.07383 5.23476
5.37961 5.39965 5.50424 5.66829 5.86182 6.06087 6.35153 6.53278
6.57412 6.69979 7.10524 7.32491 7.53595 8.07335 8.69920
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011572 B = 0.002156 C = 0.001972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2419.077458 B =12983.793840 C =14194.480820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.015 4.015
3 Si 0.994 3.006
4 H -0.272 1.272
5 H -0.269 1.269
6 H -0.272 1.272
7 C -0.332 4.332
8 H 0.080 0.920
9 N -0.573 5.573
10 C 0.439 3.561
11 O -0.623 6.623
12 C 0.066 3.934
13 N -0.637 5.637
14 C 0.022 3.978
15 C 0.174 3.826
16 N -0.706 5.706
17 C 0.593 3.407
18 O -0.589 6.589
19 C -0.310 4.310
20 C 0.090 3.910
21 N -0.308 5.308
22 N -0.386 5.386
23 C 0.129 3.871
24 C -0.075 4.075
25 C -0.115 4.115
26 C 0.111 3.889
27 C -0.198 4.198
28 C -0.145 4.145
29 H 0.278 0.722
30 H 0.396 0.604
31 H 0.069 0.931
32 H 0.094 0.906
33 H 0.352 0.648
34 H 0.082 0.918
35 H 0.054 0.946
36 H 0.411 0.589
37 H 0.218 0.782
38 H 0.101 0.899
39 H 0.107 0.893
40 H 0.100 0.900
41 H 0.138 0.862
42 H 0.111 0.889
43 H 0.107 0.893
44 H 0.112 0.888
45 H 0.094 0.906
46 H 0.105 0.895
47 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.823 -25.663 9.957 27.791
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.214 4.214
3 Si 0.818 3.182
4 H -0.197 1.197
5 H -0.194 1.194
6 H -0.197 1.197
7 C -0.462 4.462
8 H 0.098 0.902
9 N -0.210 5.210
10 C 0.227 3.773
11 O -0.509 6.509
12 C -0.065 4.065
13 N -0.269 5.269
14 C -0.070 4.070
15 C 0.050 3.950
16 N -0.357 5.357
17 C 0.382 3.618
18 O -0.471 6.471
19 C -0.325 4.325
20 C -0.097 4.097
21 N -0.126 5.126
22 N -0.165 5.165
23 C -0.007 4.007
24 C -0.114 4.114
25 C -0.153 4.153
26 C -0.007 4.007
27 C -0.238 4.238
28 C -0.182 4.182
29 H 0.087 0.913
30 H 0.230 0.770
31 H 0.087 0.913
32 H 0.112 0.888
33 H 0.172 0.828
34 H 0.100 0.900
35 H 0.072 0.928
36 H 0.247 0.753
37 H 0.235 0.765
38 H 0.120 0.880
39 H 0.125 0.875
40 H 0.118 0.882
41 H 0.156 0.844
42 H 0.129 0.871
43 H 0.125 0.875
44 H 0.130 0.870
45 H 0.112 0.888
46 H 0.123 0.877
47 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -3.048 -25.983 11.706 28.660
hybrid contribution -0.112 1.582 -1.735 2.351
sum -3.160 -24.401 9.971 26.548
Atomic orbital electron populations
1.69684 1.06888 1.29283 1.50277 1.26077 0.96563 1.02529 0.96266
0.84852 0.78048 0.76998 0.78323 1.19682 1.19449 1.19747 1.19711
0.92704 0.83927 1.49851 0.90179 1.41936 1.09352 1.04779 1.64888
1.20781 0.88166 0.86068 0.82300 1.90484 1.16001 1.87853 1.56599
1.21488 0.94970 0.87923 1.02167 1.59912 1.08714 0.98750 1.59527
1.21793 1.00214 0.91112 0.93902 1.20605 0.92837 0.97071 0.84490
1.45561 1.10727 1.59346 1.20023 1.17423 0.85757 0.76414 0.82166
1.90713 1.15263 1.59830 1.81331 1.19566 0.93546 1.21836 0.97561
1.24485 0.95733 0.95522 0.93964 1.77127 1.00550 1.24364 1.10570
1.50548 1.03494 1.47297 1.15210 1.23105 0.94425 0.92806 0.90324
1.21192 0.89416 1.02474 0.98303 1.22927 0.92969 1.00790 0.98612
1.22954 0.93672 1.02003 0.82064 1.23686 1.02157 1.04445 0.93510
1.23239 0.97403 0.96492 1.01090 0.91277 0.77029 0.91318 0.88764
0.82778 0.89986 0.92783 0.75254 0.76533 0.88015 0.87494 0.88169
0.84434 0.87101 0.87498 0.86966 0.88783 0.87700 0.86415
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -50.38 13.05 21.66 0.28 -50.09 16
2 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16
3 Si 0.99 43.34 29.55 68.60 2.03 45.36 16
4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16
6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16
7 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16
8 H 0.08 4.88 7.17 -2.91 -0.02 4.86 16
9 N -0.57 -29.88 5.28 -306.98 -1.62 -31.50 16
10 C 0.44 21.07 7.81 87.66 0.68 21.75 16
11 O -0.62 -34.25 15.62 -3.06 -0.05 -34.29 16
12 C 0.07 2.33 5.94 85.56 0.51 2.84 16
13 N -0.64 -19.43 6.43 -474.14 -3.05 -22.47 16
14 C 0.02 0.50 1.81 3.53 0.01 0.51 16
15 C 0.17 4.22 5.74 86.38 0.50 4.71 16
16 N -0.71 -16.61 5.46 -466.37 -2.55 -19.16 16
17 C 0.59 16.41 7.81 86.66 0.68 17.09 16
18 O -0.59 -19.77 16.88 -4.03 -0.07 -19.84 16
19 C -0.31 -7.70 6.13 -20.13 -0.12 -7.82 16
20 C 0.09 1.98 11.50 85.65 0.98 2.97 16
21 N -0.31 -7.44 12.64 -56.42 -0.71 -8.15 16
22 N -0.39 -7.71 4.81 -328.34 -1.58 -9.28 16
23 C 0.13 2.78 7.31 42.44 0.31 3.09 16
24 C -0.08 -1.01 6.86 30.60 0.21 -0.80 16
25 C -0.11 -0.56 7.18 31.60 0.23 -0.33 16
26 C 0.11 1.02 7.78 86.70 0.67 1.70 16
27 C -0.20 -3.69 10.02 30.62 0.31 -3.39 16
28 C -0.14 -2.46 9.87 30.62 0.30 -2.16 16
29 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16
30 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16
31 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16
32 H 0.09 3.19 6.83 -2.39 -0.02 3.17 16
33 H 0.35 11.29 8.02 -89.69 -0.72 10.57 16
34 H 0.08 1.88 7.87 -2.38 -0.02 1.86 16
35 H 0.05 1.54 6.60 -2.39 -0.02 1.53 16
36 H 0.41 8.22 7.41 -92.71 -0.69 7.54 16
37 H 0.22 3.34 7.52 -2.91 -0.02 3.31 16
38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16
39 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16
40 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16
41 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16
42 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16
43 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16
44 H 0.11 1.80 8.06 -2.39 -0.02 1.78 16
45 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16
46 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16
47 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16
Total: -1.00 -79.72 399.01 -1.87 -81.58
By element:
Atomic # 1 Polarization: 47.36 SS G_CDS: -1.09 Total: 46.26 kcal
Atomic # 6 Polarization: 15.04 SS G_CDS: 6.54 Total: 21.58 kcal
Atomic # 7 Polarization: -131.43 SS G_CDS: -9.23 Total: -140.66 kcal
Atomic # 8 Polarization: -54.02 SS G_CDS: -0.12 Total: -54.13 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal
Total: -79.72 -1.87 -81.58 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001670793672.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.784 kcal
(2) G-P(sol) polarization free energy of solvation -79.718 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.066 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.866 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.584 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.200 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds