Wall clock time and date at job start Wed Apr 1 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86804 * 120.00173 * 2 1 4 4 H 1.48493 * 109.47121 * 240.00098 * 3 2 1 5 5 H 1.48500 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47104 * 119.99680 * 3 2 1 7 7 C 1.38946 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00355 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99916 * 359.97438 * 10 9 7 12 12 C 1.50691 * 120.00400 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47659 * 180.02562 * 12 10 9 14 14 C 1.49738 * 111.50084 * 288.88181 * 13 12 10 15 15 C 1.55467 * 106.86395 * 233.69465 * 14 13 12 16 16 C 1.53403 * 101.74269 * 336.85942 * 15 14 13 17 17 H 1.08998 * 111.69168 * 281.95258 * 16 15 14 18 18 C 1.45464 * 111.00594 * 169.99904 * 13 12 10 19 19 H 1.09004 * 108.32762 * 37.02551 * 18 13 12 20 20 C 1.51097 * 119.09720 * 272.09474 * 18 13 12 21 21 C 1.53866 * 107.33543 * 176.25217 * 20 18 13 22 22 C 1.52709 * 111.53657 * 56.93478 * 21 20 18 23 23 N 1.45710 * 116.42974 * 152.97302 * 16 15 14 24 24 C 1.34770 * 122.23041 * 9.73832 * 23 16 15 25 25 O 1.21599 * 120.00184 * 4.52436 * 24 23 16 26 26 C 1.47434 * 120.00111 * 184.25239 * 24 23 16 27 27 C 1.41289 * 126.41127 * 320.06581 * 26 24 23 28 28 N 1.30445 * 108.02165 * 179.87319 * 27 26 24 29 29 N 1.39933 * 108.89595 * 0.38648 * 28 27 26 30 30 H 0.97009 * 125.75281 * 179.74853 * 29 28 27 31 31 C 1.34259 * 108.49168 * 359.74943 * 29 28 27 32 32 H 0.97006 * 119.99941 * 0.02562 * 1 2 3 33 33 H 0.97004 * 119.99977 * 359.97438 * 9 7 2 34 34 H 1.08994 * 109.47516 * 59.99756 * 12 10 9 35 35 H 1.09005 * 109.47111 * 300.00128 * 12 10 9 36 36 H 1.09001 * 110.37525 * 114.14408 * 14 13 12 37 37 H 1.08998 * 109.63150 * 352.84335 * 14 13 12 38 38 H 1.08999 * 110.97744 * 218.74373 * 15 14 13 39 39 H 1.09001 * 111.00784 * 94.98354 * 15 14 13 40 40 H 1.08997 * 109.88541 * 56.79424 * 20 18 13 41 41 H 1.09003 * 109.94810 * 295.74232 * 20 18 13 42 42 H 1.09004 * 109.06323 * 296.40365 * 21 20 18 43 43 H 1.09003 * 109.06814 * 177.46551 * 21 20 18 44 44 H 1.08995 * 109.16842 * 191.07758 * 22 21 20 45 45 H 1.09001 * 109.16065 * 71.88484 * 22 21 20 46 46 H 1.08001 * 125.99084 * 0.02562 * 27 26 24 47 47 H 1.07998 * 126.28989 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8629 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 2.8986 -6.1037 -1.3170 15 6 2.7004 -7.5692 -1.7967 16 6 2.4280 -8.2966 -0.4738 17 1 3.3468 -8.4731 0.0855 18 6 1.5203 -7.2448 0.2360 19 1 0.5560 -7.2166 -0.2714 20 6 1.3088 -7.7119 1.6573 21 6 0.4927 -9.0148 1.5951 22 6 1.1897 -10.0727 0.7423 23 7 1.6236 -9.5089 -0.5539 24 6 1.3013 -10.0811 -1.7308 25 8 1.7518 -9.6339 -2.7679 26 6 0.4072 -11.2531 -1.7602 27 6 0.4120 -12.3347 -0.8511 28 7 -0.5262 -13.1671 -1.2094 29 7 -1.1608 -12.6698 -2.3531 30 1 -1.8919 -13.0969 -2.8266 31 6 -0.5873 -11.5020 -2.6845 32 1 -0.4850 0.8401 -0.0004 33 1 0.3533 -2.3906 0.0005 34 1 0.6174 -4.9205 -0.8902 35 1 0.6167 -4.9208 0.8897 36 1 3.9613 -5.8898 -1.2036 37 1 2.4542 -5.4138 -2.0343 38 1 3.6043 -7.9497 -2.2723 39 1 1.8456 -7.6482 -2.4685 40 1 0.7586 -6.9563 2.2179 41 1 2.2709 -7.8996 2.1342 42 1 -0.4869 -8.8013 1.1674 43 1 0.3619 -9.4017 2.6057 44 1 0.5003 -10.8972 0.5608 45 1 2.0612 -10.4476 1.2789 46 1 1.0746 -12.4506 -0.0061 47 1 -0.8552 -10.8729 -3.5205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672510010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:39 Heat of formation + Delta-G solvation = 35.428974 kcal Electronic energy + Delta-G solvation = -30955.180365 eV Core-core repulsion = 26754.329557 eV Total energy + Delta-G solvation = -4200.850808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86901 -40.63663 -38.61669 -37.65613 -36.04769 -33.83294 -33.11522 -32.43400 -31.44958 -31.08127 -30.20305 -29.01809 -26.54619 -25.47153 -24.22372 -23.20692 -22.49424 -21.82270 -21.35394 -20.07763 -19.65076 -19.07452 -18.13322 -17.72892 -16.37332 -16.28449 -16.03281 -15.57636 -15.29952 -15.27760 -14.83403 -14.56335 -14.39155 -14.35826 -14.16030 -13.76514 -13.72737 -13.45136 -13.17248 -13.10034 -12.69893 -12.37937 -12.09640 -11.84510 -11.66375 -11.47947 -11.35392 -11.15905 -11.11902 -11.01347 -10.88883 -10.67666 -10.53701 -10.40610 -10.22023 -10.16362 -9.67882 -9.43415 -9.17454 -8.69992 -8.38103 -7.90881 -7.81163 -6.36445 -3.76916 1.20889 1.80052 2.25852 2.70008 3.01434 3.23721 3.28670 3.33394 3.92813 3.99541 4.13333 4.24497 4.37900 4.46326 4.63555 4.69215 4.77435 4.85658 4.91938 5.02112 5.13344 5.15817 5.25872 5.29871 5.33073 5.40774 5.46419 5.52647 5.71542 5.74636 5.77487 5.85453 5.89834 5.97149 6.04209 6.18126 6.24124 6.24513 6.36262 6.45639 6.62400 6.63177 7.02082 7.21958 7.28285 7.40748 7.59934 8.07710 8.11985 8.68273 9.23954 9.60860 10.13459 10.81511 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002184 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.091936 B =12816.216249 C =12897.184514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.296 4.296 8 H 0.102 0.898 9 N -0.568 5.568 10 C 0.446 3.554 11 O -0.575 6.575 12 C 0.044 3.956 13 N -0.496 5.496 14 C 0.054 3.946 15 C -0.126 4.126 16 C 0.137 3.863 17 H 0.093 0.907 18 C 0.059 3.941 19 H 0.041 0.959 20 C -0.103 4.103 21 C -0.131 4.131 22 C 0.099 3.901 23 N -0.598 5.598 24 C 0.598 3.402 25 O -0.534 6.534 26 C -0.286 4.286 27 C 0.079 3.921 28 N -0.294 5.294 29 N -0.464 5.464 30 H 0.445 0.555 31 C 0.125 3.875 32 H 0.271 0.729 33 H 0.391 0.609 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.194 0.806 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 -26.156 -0.796 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.231 3.769 11 O -0.458 6.458 12 C -0.087 4.087 13 N -0.220 5.220 14 C -0.074 4.074 15 C -0.165 4.165 16 C 0.033 3.967 17 H 0.111 0.889 18 C -0.052 4.052 19 H 0.059 0.941 20 C -0.141 4.141 21 C -0.170 4.170 22 C -0.024 4.024 23 N -0.331 5.331 24 C 0.386 3.614 25 O -0.412 6.412 26 C -0.301 4.301 27 C -0.109 4.109 28 N -0.116 5.116 29 N -0.169 5.169 30 H 0.290 0.710 31 C -0.028 4.028 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.210 0.790 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.527 -26.746 -0.691 27.135 hybrid contribution -0.965 1.368 -0.929 1.914 sum -5.492 -25.378 -1.620 26.016 Atomic orbital electron populations 1.69610 1.05908 1.28122 1.50967 1.25244 0.95626 0.99648 0.97525 0.85929 0.78744 0.80558 0.79046 1.19961 1.21053 1.19919 1.19638 0.93301 0.82242 1.47406 0.88014 1.41857 1.09117 1.04577 1.64970 1.19730 0.88434 0.84454 0.84238 1.90518 1.13612 1.86998 1.54647 1.22034 0.93853 0.91554 1.01295 1.62904 1.26922 1.00737 1.31462 1.23429 1.00955 0.94518 0.88453 1.22851 1.03801 0.94184 0.95619 1.22114 0.93646 0.82702 0.98209 0.88879 1.22308 0.96346 0.89834 0.96665 0.94090 1.21232 1.00868 0.96054 0.95964 1.21923 0.99471 0.95519 1.00090 1.22074 0.99886 0.96890 0.83535 1.47784 1.52446 1.27080 1.05746 1.17215 0.79639 0.81666 0.82872 1.90799 1.53905 1.64030 1.32426 1.20319 1.06343 1.00994 1.02428 1.24174 0.96534 0.91356 0.98811 1.77169 1.11352 1.22599 1.00461 1.46207 1.30316 1.17286 1.23139 0.71049 1.22981 0.93254 0.88323 0.98207 0.91927 0.77595 0.93436 0.89626 0.89530 0.92577 0.90331 0.89526 0.91111 0.90727 0.91699 0.90144 0.89013 0.91015 0.78965 0.79384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.65 5.29 -10.97 -0.06 -14.71 16 10 C 0.45 10.76 7.55 -10.99 -0.08 10.67 16 11 O -0.57 -15.78 15.21 5.54 0.08 -15.69 16 12 C 0.04 0.82 5.03 -4.98 -0.03 0.80 16 13 N -0.50 -8.48 4.82 -224.34 -1.08 -9.56 16 14 C 0.05 0.91 5.84 -0.93 -0.01 0.90 16 15 C -0.13 -1.81 4.94 -25.21 -0.12 -1.93 16 16 C 0.14 1.72 3.32 -66.54 -0.22 1.50 16 17 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 18 C 0.06 0.79 1.76 -67.83 -0.12 0.67 16 19 H 0.04 0.58 7.73 -51.93 -0.40 0.18 16 20 C -0.10 -1.11 5.97 -27.24 -0.16 -1.27 16 21 C -0.13 -1.01 5.93 -26.43 -0.16 -1.17 16 22 C 0.10 0.72 5.68 -3.44 -0.02 0.70 16 23 N -0.60 -6.28 2.91 -164.95 -0.48 -6.76 16 24 C 0.60 6.98 7.54 -12.52 -0.09 6.89 16 25 O -0.53 -7.96 14.04 5.28 0.07 -7.89 16 26 C -0.29 -2.59 5.49 -105.07 -0.58 -3.17 16 27 C 0.08 0.60 9.66 -16.98 -0.16 0.44 16 28 N -0.29 -2.42 12.63 30.86 0.39 -2.03 16 29 N -0.46 -2.73 7.29 30.85 0.22 -2.51 16 30 H 0.44 1.11 8.96 -182.72 -1.64 -0.53 16 31 C 0.12 0.87 12.00 -16.56 -0.20 0.67 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 34 H 0.05 0.83 7.93 -51.93 -0.41 0.42 16 35 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.06 1.02 7.46 -51.93 -0.39 0.63 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.34 6.36 -51.93 -0.33 1.01 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.55 4.10 -51.93 -0.21 0.34 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.19 0.97 6.83 -52.49 -0.36 0.62 16 47 H 0.19 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -35.58 375.97 -9.47 -45.05 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.80 Total: 8.66 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -2.19 Total: 7.64 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.28 Total: -59.76 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.16 Total: -23.58 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.58 -9.47 -45.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672510010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.480 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds