Wall clock time and date at job start Wed Apr 1 2020 05:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86804 * 120.00173 * 2 1 4 4 H 1.48493 * 109.47121 * 240.00098 * 3 2 1 5 5 H 1.48500 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47104 * 119.99680 * 3 2 1 7 7 C 1.38946 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00355 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99916 * 359.97438 * 10 9 7 12 12 C 1.50691 * 120.00400 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47659 * 180.02562 * 12 10 9 14 14 C 1.49738 * 111.50084 * 288.88181 * 13 12 10 15 15 C 1.55467 * 106.86395 * 233.69465 * 14 13 12 16 16 C 1.53403 * 101.74269 * 336.85942 * 15 14 13 17 17 H 1.08998 * 111.69168 * 281.95258 * 16 15 14 18 18 C 1.45464 * 111.00594 * 169.99904 * 13 12 10 19 19 H 1.09004 * 108.32762 * 37.02551 * 18 13 12 20 20 C 1.51097 * 119.09720 * 272.09474 * 18 13 12 21 21 C 1.53866 * 107.33543 * 176.25217 * 20 18 13 22 22 C 1.52709 * 111.53657 * 56.93478 * 21 20 18 23 23 N 1.45710 * 116.42974 * 152.97302 * 16 15 14 24 24 C 1.34770 * 122.23041 * 9.73832 * 23 16 15 25 25 O 1.21599 * 120.00184 * 4.52436 * 24 23 16 26 26 C 1.47434 * 120.00111 * 184.25239 * 24 23 16 27 27 C 1.41289 * 126.41127 * 320.06581 * 26 24 23 28 28 N 1.30445 * 108.02165 * 179.87319 * 27 26 24 29 29 N 1.39933 * 108.89595 * 0.38648 * 28 27 26 30 30 H 0.97009 * 125.75281 * 179.74853 * 29 28 27 31 31 C 1.34259 * 108.49168 * 359.74943 * 29 28 27 32 32 H 0.97006 * 119.99941 * 0.02562 * 1 2 3 33 33 H 0.97004 * 119.99977 * 359.97438 * 9 7 2 34 34 H 1.08994 * 109.47516 * 59.99756 * 12 10 9 35 35 H 1.09005 * 109.47111 * 300.00128 * 12 10 9 36 36 H 1.09001 * 110.37525 * 114.14408 * 14 13 12 37 37 H 1.08998 * 109.63150 * 352.84335 * 14 13 12 38 38 H 1.08999 * 110.97744 * 218.74373 * 15 14 13 39 39 H 1.09001 * 111.00784 * 94.98354 * 15 14 13 40 40 H 1.08997 * 109.88541 * 56.79424 * 20 18 13 41 41 H 1.09003 * 109.94810 * 295.74232 * 20 18 13 42 42 H 1.09004 * 109.06323 * 296.40365 * 21 20 18 43 43 H 1.09003 * 109.06814 * 177.46551 * 21 20 18 44 44 H 1.08995 * 109.16842 * 191.07758 * 22 21 20 45 45 H 1.09001 * 109.16065 * 71.88484 * 22 21 20 46 46 H 1.08001 * 125.99084 * 0.02562 * 27 26 24 47 47 H 1.07998 * 126.28989 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8629 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 2.8986 -6.1037 -1.3170 15 6 2.7004 -7.5692 -1.7967 16 6 2.4280 -8.2966 -0.4738 17 1 3.3468 -8.4731 0.0855 18 6 1.5203 -7.2448 0.2360 19 1 0.5560 -7.2166 -0.2714 20 6 1.3088 -7.7119 1.6573 21 6 0.4927 -9.0148 1.5951 22 6 1.1897 -10.0727 0.7423 23 7 1.6236 -9.5089 -0.5539 24 6 1.3013 -10.0811 -1.7308 25 8 1.7518 -9.6339 -2.7679 26 6 0.4072 -11.2531 -1.7602 27 6 0.4120 -12.3347 -0.8511 28 7 -0.5262 -13.1671 -1.2094 29 7 -1.1608 -12.6698 -2.3531 30 1 -1.8919 -13.0969 -2.8266 31 6 -0.5873 -11.5020 -2.6845 32 1 -0.4850 0.8401 -0.0004 33 1 0.3533 -2.3906 0.0005 34 1 0.6174 -4.9205 -0.8902 35 1 0.6167 -4.9208 0.8897 36 1 3.9613 -5.8898 -1.2036 37 1 2.4542 -5.4138 -2.0343 38 1 3.6043 -7.9497 -2.2723 39 1 1.8456 -7.6482 -2.4685 40 1 0.7586 -6.9563 2.2179 41 1 2.2709 -7.8996 2.1342 42 1 -0.4869 -8.8013 1.1674 43 1 0.3619 -9.4017 2.6057 44 1 0.5003 -10.8972 0.5608 45 1 2.0612 -10.4476 1.2789 46 1 1.0746 -12.4506 -0.0061 47 1 -0.8552 -10.8729 -3.5205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672510010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:38 Heat of formation + Delta-G solvation = 7.774237 kcal Electronic energy + Delta-G solvation = -30956.379565 eV Core-core repulsion = 26754.329557 eV Total energy + Delta-G solvation = -4202.050007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.49864 -41.59266 -40.14137 -39.03378 -37.09785 -35.88459 -34.02662 -33.37663 -33.09483 -32.23839 -31.02263 -29.97771 -28.18629 -26.33494 -26.03436 -24.01497 -23.25530 -22.64419 -22.32002 -21.24138 -20.81866 -20.31854 -19.85399 -18.79487 -17.74983 -17.38739 -17.08207 -16.70578 -16.52794 -16.17448 -16.15554 -15.72641 -15.62532 -15.41227 -15.22586 -15.15217 -14.92627 -14.56157 -14.28890 -14.03441 -13.77175 -13.66614 -13.47570 -13.43264 -12.96562 -12.90456 -12.62182 -12.42375 -12.24950 -12.12511 -12.11870 -11.97574 -11.88544 -11.68847 -11.60082 -11.47919 -10.76743 -10.58213 -10.31931 -10.00130 -9.84908 -9.55740 -9.21075 -8.45469 -5.94163 0.63893 1.18362 1.40169 1.41405 1.52588 1.73811 1.95773 2.06212 2.25221 2.29840 2.74047 3.19099 3.22284 3.46791 3.56237 3.79925 3.90555 3.93398 4.05809 4.12796 4.15702 4.18028 4.27328 4.31183 4.36051 4.39329 4.41568 4.49180 4.60007 4.64983 4.76047 4.84586 4.89758 4.96600 5.04675 5.11680 5.21759 5.26225 5.34056 5.41344 5.44459 5.56279 5.83119 5.99006 6.15589 6.23104 6.47112 6.53773 6.61787 7.13833 7.22753 7.57013 8.13199 8.71926 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002184 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.091936 B =12816.216249 C =12897.184514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.612 6.612 12 C 0.058 3.942 13 N -0.511 5.511 14 C 0.056 3.944 15 C -0.112 4.112 16 C 0.144 3.856 17 H 0.099 0.901 18 C 0.061 3.939 19 H 0.035 0.965 20 C -0.102 4.102 21 C -0.123 4.123 22 C 0.095 3.905 23 N -0.595 5.595 24 C 0.595 3.405 25 O -0.577 6.577 26 C -0.312 4.312 27 C 0.085 3.915 28 N -0.316 5.316 29 N -0.451 5.451 30 H 0.459 0.541 31 C 0.134 3.866 32 H 0.277 0.723 33 H 0.395 0.605 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.094 0.906 46 H 0.216 0.784 47 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 -27.881 0.243 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.214 5.214 10 C 0.231 3.769 11 O -0.498 6.498 12 C -0.073 4.073 13 N -0.236 5.236 14 C -0.072 4.072 15 C -0.150 4.150 16 C 0.039 3.961 17 H 0.117 0.883 18 C -0.049 4.049 19 H 0.053 0.947 20 C -0.140 4.140 21 C -0.161 4.161 22 C -0.026 4.026 23 N -0.327 5.327 24 C 0.385 3.615 25 O -0.457 6.457 26 C -0.327 4.327 27 C -0.102 4.102 28 N -0.138 5.138 29 N -0.158 5.158 30 H 0.307 0.693 31 C -0.019 4.019 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.112 0.888 46 H 0.232 0.768 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.839 -28.525 0.376 29.118 hybrid contribution -0.592 1.861 -1.284 2.337 sum -6.431 -26.664 -0.908 27.443 Atomic orbital electron populations 1.69674 1.06826 1.29301 1.50508 1.26045 0.96568 1.02400 0.96372 0.84988 0.77754 0.76635 0.78953 1.19805 1.19447 1.19613 1.19616 0.92668 0.83954 1.49843 0.90332 1.41925 1.09236 1.04699 1.65521 1.20685 0.88303 0.85762 0.82186 1.90486 1.15573 1.87828 1.55903 1.21859 0.93513 0.89083 1.02855 1.62879 1.27332 1.02024 1.31338 1.23311 0.99649 0.95887 0.88317 1.22641 1.03232 0.92677 0.96460 1.21940 0.94082 0.83531 0.96558 0.88331 1.22426 0.95686 0.88048 0.98732 0.94669 1.21290 1.01550 0.97484 0.93717 1.21900 0.98485 0.93931 1.01819 1.22352 1.01250 0.97046 0.81943 1.47856 1.51803 1.26125 1.06924 1.17596 0.79401 0.82030 0.82428 1.90774 1.55536 1.65532 1.33882 1.20212 1.07264 1.00899 1.04299 1.24491 0.96379 0.90384 0.98978 1.77143 1.11952 1.23250 1.01422 1.46232 1.30223 1.16776 1.22526 0.69311 1.23291 0.92366 0.88402 0.97887 0.91332 0.77144 0.92223 0.87397 0.91434 0.94645 0.90463 0.90622 0.91657 0.90490 0.92095 0.87270 0.87241 0.88808 0.76776 0.77596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.63 13.05 21.66 0.28 -50.35 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.72 29.55 68.60 2.03 45.75 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.58 -30.53 5.29 -306.99 -1.62 -32.15 16 10 C 0.44 22.01 7.55 87.65 0.66 22.68 16 11 O -0.61 -34.99 15.21 -3.09 -0.05 -35.04 16 12 C 0.06 2.18 5.03 85.55 0.43 2.61 16 13 N -0.51 -17.66 4.82 -863.69 -4.16 -21.82 16 14 C 0.06 1.98 5.84 86.60 0.51 2.48 16 15 C -0.11 -3.29 4.94 31.58 0.16 -3.13 16 16 C 0.14 3.49 3.32 46.32 0.15 3.64 16 17 H 0.10 2.31 8.14 -2.39 -0.02 2.30 16 18 C 0.06 1.57 1.76 45.61 0.08 1.65 16 19 H 0.04 0.96 7.73 -2.38 -0.02 0.94 16 20 C -0.10 -1.98 5.97 30.27 0.18 -1.80 16 21 C -0.12 -1.49 5.93 30.79 0.18 -1.31 16 22 C 0.10 1.07 5.68 86.02 0.49 1.56 16 23 N -0.60 -11.50 2.91 -794.04 -2.31 -13.81 16 24 C 0.60 13.26 7.54 86.67 0.65 13.92 16 25 O -0.58 -17.23 14.04 -4.03 -0.06 -17.29 16 26 C -0.31 -5.05 5.49 -20.15 -0.11 -5.16 16 27 C 0.08 1.07 9.66 85.65 0.83 1.90 16 28 N -0.32 -4.40 12.63 -56.28 -0.71 -5.11 16 29 N -0.45 -4.26 7.29 -56.32 -0.41 -4.67 16 30 H 0.46 1.21 8.96 -213.42 -1.91 -0.71 16 31 C 0.13 1.60 12.00 84.27 1.01 2.61 16 32 H 0.28 14.26 8.31 -92.70 -0.77 13.49 16 33 H 0.39 19.91 7.90 -92.71 -0.73 19.18 16 34 H 0.06 2.09 7.93 -2.39 -0.02 2.07 16 35 H 0.11 3.54 8.07 -2.38 -0.02 3.52 16 36 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.03 1.36 7.46 -2.39 -0.02 1.34 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 2.43 6.36 -2.39 -0.02 2.41 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 42 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.11 0.91 4.10 -2.39 -0.01 0.90 16 45 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.22 1.44 6.83 -2.91 -0.02 1.42 16 47 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -79.04 375.97 -2.12 -81.16 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -1.61 Total: 30.43 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 6.50 Total: 22.90 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -8.93 Total: -127.91 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.10 Total: -52.33 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -79.04 -2.12 -81.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672510010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.931 kcal (2) G-P(sol) polarization free energy of solvation -79.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds