Wall clock time and date at job start Wed Apr 1 2020 05:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47017 * 269.99706 * 3 2 1 5 5 H 1.48493 * 109.47379 * 29.99404 * 3 2 1 6 6 H 1.48498 * 109.47268 * 150.00105 * 3 2 1 7 7 C 1.38950 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00303 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99573 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99948 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99553 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99891 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47040 * 175.66744 * 12 10 9 14 14 C 1.49260 * 110.99727 * 66.16571 * 13 12 10 15 15 C 1.55132 * 106.78619 * 145.28177 * 14 13 12 16 16 C 1.52664 * 103.84689 * 2.91827 * 15 14 13 17 17 H 1.08998 * 110.29233 * 89.30561 * 16 15 14 18 18 C 1.46743 * 111.19273 * 182.17529 * 13 12 10 19 19 H 1.09010 * 109.15981 * 313.32045 * 18 13 12 20 20 C 1.51321 * 118.85951 * 79.92663 * 18 13 12 21 21 C 1.53837 * 107.27738 * 180.78815 * 20 18 13 22 22 C 1.53133 * 111.55796 * 302.58347 * 21 20 18 23 23 N 1.45500 * 117.35418 * 216.68479 * 16 15 14 24 24 C 1.34776 * 122.25023 * 353.55409 * 23 16 15 25 25 O 1.21605 * 120.00414 * 6.38585 * 24 23 16 26 26 C 1.47428 * 119.99707 * 186.39236 * 24 23 16 27 27 C 1.41297 * 126.41320 * 30.94363 * 26 24 23 28 28 N 1.30449 * 108.02330 * 179.97438 * 27 26 24 29 29 N 1.39935 * 108.89505 * 0.02562 * 28 27 26 30 30 H 0.96999 * 125.75237 * 180.02562 * 29 28 27 31 31 C 1.34256 * 108.49467 * 0.02562 * 29 28 27 32 32 H 0.96998 * 120.00130 * 0.02562 * 1 2 3 33 33 H 0.97002 * 120.00574 * 0.02562 * 9 7 2 34 34 H 1.08996 * 109.47195 * 55.67086 * 12 10 9 35 35 H 1.08995 * 109.47635 * 295.66839 * 12 10 9 36 36 H 1.08991 * 109.99494 * 25.94961 * 14 13 12 37 37 H 1.08994 * 110.03028 * 264.63128 * 14 13 12 38 38 H 1.08997 * 110.54740 * 244.32538 * 15 14 13 39 39 H 1.09004 * 110.54712 * 121.51058 * 15 14 13 40 40 H 1.09000 * 109.89367 * 300.23499 * 20 18 13 41 41 H 1.08996 * 109.89245 * 61.34359 * 20 18 13 42 42 H 1.09009 * 109.05267 * 63.27667 * 21 20 18 43 43 H 1.08995 * 109.05303 * 182.17680 * 21 20 18 44 44 H 1.09001 * 109.33278 * 288.27490 * 22 21 20 45 45 H 1.09003 * 109.24478 * 168.92925 * 22 21 20 46 46 H 1.07997 * 125.99189 * 359.97438 * 27 26 24 47 47 H 1.08003 * 126.29660 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1949 -5.9775 -0.1036 14 6 3.0526 -6.0650 1.1148 15 6 3.3225 -7.5720 1.3654 16 6 2.6370 -8.2662 0.1912 17 1 3.3277 -8.3626 -0.6465 18 6 1.4970 -7.2672 -0.1582 19 1 0.7336 -7.2940 0.6195 20 6 0.8976 -7.7182 -1.4724 21 6 0.2222 -9.0779 -1.2238 22 6 1.2137 -10.1062 -0.6722 23 7 1.9846 -9.5396 0.4557 24 6 2.0810 -10.1634 1.6465 25 8 2.6311 -9.6108 2.5797 26 6 1.5196 -11.5158 1.8177 27 6 1.4163 -12.5132 0.8222 28 7 0.8672 -13.5665 1.3616 29 7 0.5965 -13.2971 2.7079 30 1 0.1891 -13.9118 3.3380 31 6 0.9957 -12.0446 2.9802 32 1 -0.4850 0.8400 -0.0004 33 1 0.3534 -2.3907 -0.0002 34 1 0.5599 -4.8880 -0.8472 35 1 0.6770 -4.9548 0.9275 36 1 2.5319 -5.6325 1.9690 37 1 3.9934 -5.5407 0.9475 38 1 2.8785 -7.8883 2.3093 39 1 4.3934 -7.7753 1.3580 40 1 0.1578 -6.9929 -1.8111 41 1 1.6828 -7.8254 -2.2207 42 1 -0.5914 -8.9459 -0.5104 43 1 -0.1870 -9.4490 -2.1634 44 1 1.9025 -10.4036 -1.4629 45 1 0.6666 -10.9835 -0.3268 46 1 1.7358 -12.4200 -0.2052 47 1 0.9220 -11.5432 3.9340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672510011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:42 Heat of formation + Delta-G solvation = 39.190593 kcal Electronic energy + Delta-G solvation = -30919.700348 eV Core-core repulsion = 26719.012656 eV Total energy + Delta-G solvation = -4200.687692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.87580 -40.63176 -38.62900 -37.65311 -36.03984 -33.84493 -33.11030 -32.44437 -31.46742 -31.09823 -30.19157 -28.97565 -26.53587 -25.47304 -24.22722 -23.16475 -22.50150 -21.80873 -21.17706 -20.23540 -19.73075 -19.08058 -18.10315 -17.72951 -16.38090 -16.19077 -15.99721 -15.47665 -15.30106 -15.20149 -14.87933 -14.56891 -14.45810 -14.38564 -14.13585 -13.78492 -13.70113 -13.51859 -13.19957 -13.18060 -12.59387 -12.38186 -12.15932 -11.82141 -11.67134 -11.49340 -11.31044 -11.15017 -11.09862 -11.00353 -10.86872 -10.66623 -10.53266 -10.35813 -10.23177 -10.17156 -9.45499 -9.39449 -9.11278 -8.68049 -8.41408 -7.92741 -7.84650 -6.36925 -3.77328 1.17582 1.76941 2.25160 2.73953 3.07222 3.21223 3.29372 3.35580 3.93437 4.02612 4.12935 4.25553 4.37564 4.50243 4.63205 4.70007 4.78163 4.85038 4.91310 5.02884 5.13510 5.20382 5.27570 5.30528 5.32802 5.44534 5.51586 5.55715 5.71708 5.77382 5.79193 5.87461 5.92178 5.97941 6.04621 6.18669 6.25374 6.32690 6.37381 6.61095 6.61669 6.73123 7.01323 7.25904 7.28207 7.40379 7.59866 8.10812 8.11831 8.67465 9.23388 9.60092 10.12374 10.81060 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026230 B = 0.002143 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.241603 B =13060.430128 C =13365.399186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.020 3.980 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.447 3.553 11 O -0.577 6.577 12 C 0.039 3.961 13 N -0.484 5.484 14 C 0.049 3.951 15 C -0.147 4.147 16 C 0.143 3.857 17 H 0.087 0.913 18 C 0.049 3.951 19 H 0.045 0.955 20 C -0.103 4.103 21 C -0.131 4.131 22 C 0.101 3.899 23 N -0.598 5.598 24 C 0.600 3.400 25 O -0.535 6.535 26 C -0.289 4.289 27 C 0.080 3.920 28 N -0.295 5.295 29 N -0.464 5.464 30 H 0.445 0.555 31 C 0.128 3.872 32 H 0.271 0.729 33 H 0.391 0.609 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.194 0.806 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 -27.218 1.641 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.425 4.425 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.232 3.768 11 O -0.461 6.461 12 C -0.093 4.093 13 N -0.208 5.208 14 C -0.078 4.078 15 C -0.185 4.185 16 C 0.039 3.961 17 H 0.105 0.895 18 C -0.061 4.061 19 H 0.063 0.937 20 C -0.141 4.141 21 C -0.170 4.170 22 C -0.022 4.022 23 N -0.331 5.331 24 C 0.389 3.611 25 O -0.413 6.413 26 C -0.304 4.304 27 C -0.108 4.108 28 N -0.117 5.117 29 N -0.170 5.170 30 H 0.289 0.711 31 C -0.024 4.024 32 H 0.080 0.920 33 H 0.224 0.776 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.210 0.790 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.840 -27.855 1.468 28.038 hybrid contribution -0.842 1.374 1.035 1.915 sum -3.682 -26.481 2.503 26.852 Atomic orbital electron populations 1.69612 1.05915 1.28039 1.50963 1.25249 0.95633 0.99672 0.97516 0.85864 0.79219 0.80885 0.78354 1.20440 1.21007 1.19450 1.19692 0.93337 0.82215 1.47306 0.87942 1.41855 1.09136 1.04572 1.64801 1.19705 0.88386 0.84499 0.84202 1.90504 1.13657 1.86991 1.54916 1.22051 0.94505 0.91664 1.01080 1.64231 1.18320 0.99940 1.38325 1.23328 0.99442 0.94946 0.90119 1.22981 1.01268 0.93978 1.00282 1.21679 0.94006 0.81284 0.99118 0.89491 1.22634 0.95612 0.90437 0.97434 0.93683 1.21261 1.00353 0.95643 0.96865 1.21981 0.98152 0.95273 1.01563 1.22164 0.94381 0.97004 0.88638 1.47657 1.50814 1.22163 1.12433 1.17252 0.78403 0.83651 0.81760 1.90662 1.44741 1.65919 1.40021 1.20371 1.17629 0.97826 0.94584 1.24253 0.96619 0.89878 1.00019 1.77181 1.21693 1.23342 0.89451 1.46227 1.48644 1.12105 1.09989 0.71055 1.23034 0.94131 0.85570 0.99668 0.91964 0.77558 0.89506 0.93435 0.93939 0.88641 0.86578 0.91123 0.91162 0.90622 0.91628 0.90131 0.91008 0.89091 0.78960 0.79262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.65 5.29 -10.96 -0.06 -14.71 16 10 C 0.45 10.80 7.61 -10.98 -0.08 10.72 16 11 O -0.58 -15.80 14.23 5.55 0.08 -15.72 16 12 C 0.04 0.72 5.24 -4.98 -0.03 0.70 16 13 N -0.48 -8.40 5.02 -224.17 -1.12 -9.53 16 14 C 0.05 0.87 5.60 -1.38 -0.01 0.86 16 15 C -0.15 -2.20 5.75 -25.78 -0.15 -2.35 16 16 C 0.14 1.84 3.17 -67.28 -0.21 1.63 16 17 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 18 C 0.05 0.66 1.75 -67.28 -0.12 0.54 16 19 H 0.05 0.65 7.98 -51.92 -0.41 0.24 16 20 C -0.10 -1.09 5.97 -27.14 -0.16 -1.26 16 21 C -0.13 -1.00 5.96 -26.23 -0.16 -1.16 16 22 C 0.10 0.73 5.27 -3.20 -0.02 0.71 16 23 N -0.60 -6.33 2.91 -165.53 -0.48 -6.81 16 24 C 0.60 7.01 7.65 -12.52 -0.10 6.91 16 25 O -0.54 -7.94 13.60 5.27 0.07 -7.87 16 26 C -0.29 -2.59 5.53 -105.06 -0.58 -3.17 16 27 C 0.08 0.61 9.65 -16.98 -0.16 0.44 16 28 N -0.30 -2.39 12.63 30.86 0.39 -2.00 16 29 N -0.46 -2.65 7.29 30.85 0.22 -2.43 16 30 H 0.44 1.01 8.96 -182.72 -1.64 -0.63 16 31 C 0.13 0.87 11.95 -16.56 -0.20 0.67 16 32 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 34 H 0.09 1.46 7.95 -51.93 -0.41 1.05 16 35 H 0.05 0.84 7.93 -51.93 -0.41 0.43 16 36 H 0.04 0.78 7.66 -51.93 -0.40 0.38 16 37 H 0.10 1.91 7.19 -51.93 -0.37 1.54 16 38 H 0.12 1.87 5.10 -52.46 -0.27 1.60 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.77 7.95 -51.93 -0.41 0.35 16 41 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 42 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.54 4.54 -51.93 -0.24 0.31 16 46 H 0.19 0.98 6.64 -52.49 -0.35 0.63 16 47 H 0.19 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -35.40 373.15 -9.48 -44.89 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.70 Total: 9.19 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -2.21 Total: 7.20 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.33 Total: -59.66 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.15 Total: -23.59 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.40 -9.48 -44.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672510011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.077 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds