Wall clock time and date at job start Wed Apr 1 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47017 * 269.99706 * 3 2 1 5 5 H 1.48493 * 109.47379 * 29.99404 * 3 2 1 6 6 H 1.48498 * 109.47268 * 150.00105 * 3 2 1 7 7 C 1.38950 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00303 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99573 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99948 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99553 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99891 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47040 * 175.66744 * 12 10 9 14 14 C 1.49260 * 110.99727 * 66.16571 * 13 12 10 15 15 C 1.55132 * 106.78619 * 145.28177 * 14 13 12 16 16 C 1.52664 * 103.84689 * 2.91827 * 15 14 13 17 17 H 1.08998 * 110.29233 * 89.30561 * 16 15 14 18 18 C 1.46743 * 111.19273 * 182.17529 * 13 12 10 19 19 H 1.09010 * 109.15981 * 313.32045 * 18 13 12 20 20 C 1.51321 * 118.85951 * 79.92663 * 18 13 12 21 21 C 1.53837 * 107.27738 * 180.78815 * 20 18 13 22 22 C 1.53133 * 111.55796 * 302.58347 * 21 20 18 23 23 N 1.45500 * 117.35418 * 216.68479 * 16 15 14 24 24 C 1.34776 * 122.25023 * 353.55409 * 23 16 15 25 25 O 1.21605 * 120.00414 * 6.38585 * 24 23 16 26 26 C 1.47428 * 119.99707 * 186.39236 * 24 23 16 27 27 C 1.41297 * 126.41320 * 30.94363 * 26 24 23 28 28 N 1.30449 * 108.02330 * 179.97438 * 27 26 24 29 29 N 1.39935 * 108.89505 * 0.02562 * 28 27 26 30 30 H 0.96999 * 125.75237 * 180.02562 * 29 28 27 31 31 C 1.34256 * 108.49467 * 0.02562 * 29 28 27 32 32 H 0.96998 * 120.00130 * 0.02562 * 1 2 3 33 33 H 0.97002 * 120.00574 * 0.02562 * 9 7 2 34 34 H 1.08996 * 109.47195 * 55.67086 * 12 10 9 35 35 H 1.08995 * 109.47635 * 295.66839 * 12 10 9 36 36 H 1.08991 * 109.99494 * 25.94961 * 14 13 12 37 37 H 1.08994 * 110.03028 * 264.63128 * 14 13 12 38 38 H 1.08997 * 110.54740 * 244.32538 * 15 14 13 39 39 H 1.09004 * 110.54712 * 121.51058 * 15 14 13 40 40 H 1.09000 * 109.89367 * 300.23499 * 20 18 13 41 41 H 1.08996 * 109.89245 * 61.34359 * 20 18 13 42 42 H 1.09009 * 109.05267 * 63.27667 * 21 20 18 43 43 H 1.08995 * 109.05303 * 182.17680 * 21 20 18 44 44 H 1.09001 * 109.33278 * 288.27490 * 22 21 20 45 45 H 1.09003 * 109.24478 * 168.92925 * 22 21 20 46 46 H 1.07997 * 125.99189 * 359.97438 * 27 26 24 47 47 H 1.08003 * 126.29660 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1949 -5.9775 -0.1036 14 6 3.0526 -6.0650 1.1148 15 6 3.3225 -7.5720 1.3654 16 6 2.6370 -8.2662 0.1912 17 1 3.3277 -8.3626 -0.6465 18 6 1.4970 -7.2672 -0.1582 19 1 0.7336 -7.2940 0.6195 20 6 0.8976 -7.7182 -1.4724 21 6 0.2222 -9.0779 -1.2238 22 6 1.2137 -10.1062 -0.6722 23 7 1.9846 -9.5396 0.4557 24 6 2.0810 -10.1634 1.6465 25 8 2.6311 -9.6108 2.5797 26 6 1.5196 -11.5158 1.8177 27 6 1.4163 -12.5132 0.8222 28 7 0.8672 -13.5665 1.3616 29 7 0.5965 -13.2971 2.7079 30 1 0.1891 -13.9118 3.3380 31 6 0.9957 -12.0446 2.9802 32 1 -0.4850 0.8400 -0.0004 33 1 0.3534 -2.3907 -0.0002 34 1 0.5599 -4.8880 -0.8472 35 1 0.6770 -4.9548 0.9275 36 1 2.5319 -5.6325 1.9690 37 1 3.9934 -5.5407 0.9475 38 1 2.8785 -7.8883 2.3093 39 1 4.3934 -7.7753 1.3580 40 1 0.1578 -6.9929 -1.8111 41 1 1.6828 -7.8254 -2.2207 42 1 -0.5914 -8.9459 -0.5104 43 1 -0.1870 -9.4490 -2.1634 44 1 1.9025 -10.4036 -1.4629 45 1 0.6666 -10.9835 -0.3268 46 1 1.7358 -12.4200 -0.2052 47 1 0.9220 -11.5432 3.9340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672510011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:41 Heat of formation + Delta-G solvation = 11.367141 kcal Electronic energy + Delta-G solvation = -30920.906863 eV Core-core repulsion = 26719.012656 eV Total energy + Delta-G solvation = -4201.894207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.50109 -41.59492 -40.17650 -39.01308 -37.11016 -35.89314 -34.02155 -33.40079 -33.11631 -32.24712 -31.00848 -29.94939 -28.18924 -26.34133 -26.03888 -23.96002 -23.26055 -22.64092 -22.20188 -21.36435 -20.89749 -20.37017 -19.85667 -18.74433 -17.76076 -17.30056 -17.08688 -16.57361 -16.42247 -16.26861 -16.15540 -15.73707 -15.65325 -15.45041 -15.33406 -15.18107 -14.94836 -14.54875 -14.30264 -14.02452 -13.77657 -13.66890 -13.51680 -13.39679 -12.94699 -12.88763 -12.65028 -12.41659 -12.25100 -12.12423 -12.11416 -11.97740 -11.83430 -11.75099 -11.55216 -11.48471 -10.75842 -10.32915 -10.30604 -10.00925 -9.85271 -9.53243 -9.32292 -8.46260 -5.94851 0.60574 1.16382 1.37820 1.41167 1.54190 1.75697 1.98712 2.04816 2.28955 2.31224 2.78764 3.18913 3.22588 3.45604 3.57686 3.85023 3.93902 3.94340 4.05114 4.10852 4.18255 4.20964 4.27686 4.31359 4.39703 4.41018 4.43681 4.49402 4.59859 4.64762 4.74829 4.85063 4.94708 5.00497 5.08390 5.17141 5.22393 5.25798 5.34209 5.40928 5.43266 5.58452 5.84791 5.98307 6.11934 6.23263 6.48163 6.54830 6.60807 7.13035 7.25382 7.55759 8.11890 8.71339 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026230 B = 0.002143 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.241603 B =13060.430128 C =13365.399186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.614 6.614 12 C 0.052 3.948 13 N -0.498 5.498 14 C 0.053 3.947 15 C -0.137 4.137 16 C 0.149 3.851 17 H 0.092 0.908 18 C 0.052 3.948 19 H 0.037 0.963 20 C -0.102 4.102 21 C -0.123 4.123 22 C 0.096 3.904 23 N -0.596 5.596 24 C 0.596 3.404 25 O -0.577 6.577 26 C -0.315 4.315 27 C 0.087 3.913 28 N -0.317 5.317 29 N -0.450 5.450 30 H 0.459 0.541 31 C 0.139 3.861 32 H 0.277 0.723 33 H 0.396 0.604 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.215 0.785 47 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 -29.133 0.675 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.500 6.500 12 C -0.079 4.079 13 N -0.222 5.222 14 C -0.075 4.075 15 C -0.175 4.175 16 C 0.045 3.955 17 H 0.110 0.890 18 C -0.057 4.057 19 H 0.055 0.945 20 C -0.140 4.140 21 C -0.162 4.162 22 C -0.025 4.025 23 N -0.327 5.327 24 C 0.388 3.612 25 O -0.459 6.459 26 C -0.330 4.330 27 C -0.101 4.101 28 N -0.139 5.139 29 N -0.157 5.157 30 H 0.307 0.693 31 C -0.015 4.015 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.127 0.873 46 H 0.232 0.768 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.372 -29.830 0.481 30.152 hybrid contribution -0.390 1.916 1.379 2.392 sum -4.762 -27.914 1.859 28.378 Atomic orbital electron populations 1.69672 1.06806 1.29263 1.50466 1.26047 0.96582 1.02403 0.96359 0.84921 0.77821 0.76851 0.78696 1.19515 1.19496 1.19901 1.19648 0.92653 0.83943 1.49808 0.90373 1.41917 1.09258 1.04667 1.65373 1.20671 0.88280 0.85828 0.82223 1.90481 1.15599 1.87813 1.56079 1.21896 0.94199 0.89129 1.02686 1.64192 1.18801 1.01354 1.37878 1.23163 0.97962 0.96540 0.89863 1.22826 1.01423 0.92188 1.01054 1.21485 0.93761 0.82423 0.97875 0.89022 1.22748 0.95406 0.88297 0.99253 0.94470 1.21329 1.00414 0.97346 0.94921 1.21968 0.97707 0.93489 1.03011 1.22463 0.94691 0.97229 0.88069 1.47727 1.50673 1.21078 1.13266 1.17648 0.77796 0.84461 0.81344 1.90633 1.46695 1.67137 1.41398 1.20241 1.19653 0.96928 0.96140 1.24555 0.95798 0.88999 1.00730 1.77157 1.22431 1.23824 0.90446 1.46250 1.47789 1.11986 1.09691 0.69282 1.23344 0.92615 0.85657 0.99844 0.91309 0.77078 0.87085 0.92222 0.95526 0.91881 0.87411 0.91296 0.91294 0.90309 0.92057 0.87104 0.88655 0.87314 0.76845 0.77452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.58 13.05 21.66 0.28 -50.29 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.86 29.55 68.60 2.03 45.88 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.57 -30.54 5.29 -306.98 -1.62 -32.17 16 10 C 0.44 22.11 7.61 87.66 0.67 22.77 16 11 O -0.61 -35.22 14.23 -3.07 -0.04 -35.26 16 12 C 0.05 1.97 5.24 85.56 0.45 2.42 16 13 N -0.50 -17.52 5.02 -863.14 -4.33 -21.85 16 14 C 0.05 1.97 5.60 86.57 0.48 2.45 16 15 C -0.14 -4.25 5.75 31.21 0.18 -4.07 16 16 C 0.15 3.75 3.17 45.95 0.15 3.90 16 17 H 0.09 2.24 8.06 -2.39 -0.02 2.22 16 18 C 0.05 1.37 1.75 45.28 0.08 1.45 16 19 H 0.04 1.05 7.98 -2.38 -0.02 1.03 16 20 C -0.10 -1.93 5.97 30.33 0.18 -1.74 16 21 C -0.12 -1.45 5.96 30.92 0.18 -1.27 16 22 C 0.10 1.07 5.27 86.15 0.45 1.52 16 23 N -0.60 -11.63 2.91 -795.86 -2.32 -13.95 16 24 C 0.60 13.34 7.65 86.66 0.66 14.00 16 25 O -0.58 -17.27 13.60 -4.05 -0.06 -17.32 16 26 C -0.31 -5.03 5.53 -20.15 -0.11 -5.14 16 27 C 0.09 1.07 9.65 85.65 0.83 1.90 16 28 N -0.32 -4.32 12.63 -56.27 -0.71 -5.03 16 29 N -0.45 -4.06 7.29 -56.32 -0.41 -4.47 16 30 H 0.46 0.98 8.96 -213.43 -1.91 -0.94 16 31 C 0.14 1.61 11.95 84.28 1.01 2.61 16 32 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.40 19.95 7.90 -92.71 -0.73 19.22 16 34 H 0.11 3.63 7.95 -2.39 -0.02 3.61 16 35 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 36 H 0.03 1.04 7.66 -2.39 -0.02 1.02 16 37 H 0.06 2.73 7.19 -2.39 -0.02 2.71 16 38 H 0.11 3.63 5.10 -10.75 -0.05 3.57 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 1.34 7.95 -2.39 -0.02 1.32 16 41 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 42 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.11 0.88 4.54 -2.39 -0.01 0.87 16 46 H 0.22 1.43 6.64 -2.91 -0.02 1.41 16 47 H 0.21 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -79.36 373.15 -2.34 -81.71 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -1.65 Total: 30.74 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 6.49 Total: 22.02 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -9.11 Total: -127.76 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.10 Total: -52.59 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -79.36 -2.34 -81.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672510011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.073 kcal (2) G-P(sol) polarization free energy of solvation -79.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds