Wall clock time and date at job start Wed Apr 1 2020 05:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99914 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00007 * 3 2 1 7 7 C 1.38950 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99959 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46946 * 180.02562 * 12 10 9 14 14 C 1.48478 * 111.00208 * 69.87714 * 13 12 10 15 15 C 1.54928 * 103.22266 * 159.82386 * 14 13 12 16 16 C 1.54446 * 102.94002 * 322.29395 * 15 14 13 17 17 N 1.46500 * 111.71706 * 260.16487 * 16 15 14 18 18 C 1.34774 * 120.00102 * 298.98752 * 17 16 15 19 19 O 1.21610 * 119.99949 * 359.97438 * 18 17 16 20 20 C 1.47425 * 120.00272 * 180.02562 * 18 17 16 21 21 C 1.41299 * 126.41218 * 0.02562 * 20 18 17 22 22 N 1.30447 * 108.02038 * 179.97438 * 21 20 18 23 23 N 1.39937 * 108.89984 * 0.02562 * 22 21 20 24 24 H 0.96999 * 125.75325 * 180.02562 * 23 22 21 25 25 C 1.34260 * 108.48978 * 359.75131 * 23 22 21 26 26 C 1.54113 * 109.02962 * 136.23156 * 16 15 14 27 27 C 1.54881 * 104.15804 * 222.52214 * 26 16 15 28 28 C 1.54826 * 102.74045 * 38.45270 * 27 26 16 29 29 C 1.47926 * 110.99877 * 187.48935 * 13 12 10 30 30 H 1.08995 * 111.35125 * 336.24879 * 29 13 12 31 31 H 0.96996 * 120.00340 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00486 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.47178 * 300.00469 * 12 10 9 34 34 H 1.09006 * 109.46629 * 60.00665 * 12 10 9 35 35 H 1.08996 * 110.66644 * 278.26329 * 14 13 12 36 36 H 1.09006 * 110.66463 * 41.39192 * 14 13 12 37 37 H 1.09002 * 110.71894 * 80.65805 * 15 14 13 38 38 H 1.09006 * 110.71781 * 203.93124 * 15 14 13 39 39 H 0.96997 * 119.99665 * 118.98908 * 17 16 15 40 40 H 1.07998 * 125.98737 * 359.97438 * 21 20 18 41 41 H 1.08001 * 126.29134 * 180.25220 * 25 23 22 42 42 H 1.09006 * 110.48873 * 341.19013 * 26 16 15 43 43 H 1.08997 * 110.49529 * 103.84904 * 26 16 15 44 44 H 1.08999 * 110.75601 * 156.76284 * 27 26 16 45 45 H 1.08997 * 110.75623 * 279.95337 * 27 26 16 46 46 H 1.08990 * 110.44599 * 80.94029 * 28 27 26 47 47 H 1.09008 * 110.44329 * 203.47220 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2832 2.7465 -0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0034 13 7 2.1982 -5.9794 0.0036 14 6 2.9075 -6.0729 1.3047 15 6 3.4315 -7.5308 1.3188 16 6 2.2794 -8.3187 0.6575 17 7 1.4348 -8.9824 1.6537 18 6 1.9650 -9.9078 2.4777 19 8 3.1444 -10.1922 2.3939 20 6 1.1150 -10.5761 3.4798 21 6 -0.2639 -10.3527 3.6931 22 7 -0.6537 -11.1327 4.6633 23 7 0.4408 -11.8810 5.1110 24 1 0.4246 -12.5377 5.8247 25 6 1.5158 -11.5409 4.3820 26 6 2.8714 -9.3249 -0.3486 27 6 1.9395 -9.2209 -1.5813 28 6 1.6317 -7.7051 -1.6497 29 6 1.5018 -7.2723 -0.1747 30 1 0.4602 -7.2086 0.1397 31 1 -0.4850 -0.8400 -0.0004 32 1 0.3533 -2.3906 0.0016 33 1 0.6180 -4.9200 0.8940 34 1 0.6160 -4.9212 -0.8860 35 1 3.7361 -5.3658 1.3427 36 1 2.2179 -5.9039 2.1318 37 1 4.3454 -7.6178 0.7311 38 1 3.5951 -7.8719 2.3411 39 1 0.4940 -8.7558 1.7202 40 1 -0.8859 -9.6580 3.1484 41 1 2.5116 -11.9463 4.4841 42 1 3.8901 -9.0432 -0.6154 43 1 2.8490 -10.3340 0.0628 44 1 2.4540 -9.5517 -2.4835 45 1 1.0272 -9.7966 -1.4254 46 1 2.4506 -7.1717 -2.1322 47 1 0.6964 -7.5301 -2.1815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676791504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:30 Heat of formation + Delta-G solvation = 15.881610 kcal Electronic energy + Delta-G solvation = -30819.561111 eV Core-core repulsion = 26617.862666 eV Total energy + Delta-G solvation = -4201.698445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78077 -40.72436 -38.74967 -37.91176 -35.07759 -34.07175 -33.89311 -32.29682 -31.45882 -30.98522 -30.33022 -28.28938 -26.74780 -25.56699 -23.83776 -23.60650 -22.40076 -21.49815 -20.78279 -19.97578 -19.56752 -19.37932 -18.76060 -17.87873 -17.05014 -16.14946 -16.05796 -15.60109 -15.37122 -15.08984 -14.99553 -14.73978 -14.54891 -14.31633 -13.98206 -13.81666 -13.66258 -13.55836 -13.29623 -12.94214 -12.69268 -12.12570 -11.94985 -11.62897 -11.57037 -11.29695 -11.16708 -11.08107 -11.01139 -10.90857 -10.78771 -10.76513 -10.47296 -10.33094 -10.19182 -9.91741 -9.83404 -9.50275 -9.31712 -9.01791 -8.51231 -8.05982 -7.98343 -6.72658 -3.85549 1.14091 1.76195 2.23437 3.00692 3.23521 3.33036 3.36525 3.56725 3.87403 3.98976 4.14731 4.24591 4.35605 4.39224 4.53256 4.74324 4.80956 4.89942 4.97426 5.19215 5.20054 5.23345 5.24987 5.29155 5.34419 5.51311 5.59342 5.63717 5.73651 5.76413 5.87476 5.88904 5.90679 6.00669 6.03879 6.09853 6.15691 6.23143 6.36588 6.48505 6.54850 6.60354 6.99683 7.12493 7.20372 7.40028 7.83726 8.10949 8.13152 8.63392 8.83898 9.50756 9.92253 10.70923 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.002368 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.850041 B =11821.135770 C =12683.257684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.010 4.010 3 Si 1.091 2.909 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.578 5.578 10 C 0.449 3.551 11 O -0.569 6.569 12 C 0.036 3.964 13 N -0.480 5.480 14 C 0.039 3.961 15 C -0.118 4.118 16 C 0.167 3.833 17 N -0.711 5.711 18 C 0.596 3.404 19 O -0.541 6.541 20 C -0.293 4.293 21 C 0.084 3.916 22 N -0.295 5.295 23 N -0.464 5.464 24 H 0.445 0.555 25 C 0.134 3.866 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.109 4.109 29 C 0.062 3.938 30 H 0.062 0.938 31 H 0.260 0.740 32 H 0.375 0.625 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.396 0.604 40 H 0.190 0.810 41 H 0.192 0.808 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -25.116 5.543 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.213 4.213 3 Si 0.917 3.083 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.509 4.509 8 H 0.116 0.884 9 N -0.217 5.217 10 C 0.234 3.766 11 O -0.452 6.452 12 C -0.096 4.096 13 N -0.204 5.204 14 C -0.088 4.088 15 C -0.157 4.157 16 C 0.080 3.920 17 N -0.361 5.361 18 C 0.384 3.616 19 O -0.419 6.419 20 C -0.308 4.308 21 C -0.104 4.104 22 N -0.116 5.116 23 N -0.169 5.169 24 H 0.290 0.710 25 C -0.019 4.019 26 C -0.154 4.154 27 C -0.162 4.162 28 C -0.147 4.147 29 C -0.048 4.048 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.207 0.793 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.231 0.769 40 H 0.206 0.794 41 H 0.209 0.791 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.422 -23.858 5.765 24.586 hybrid contribution -1.007 -1.729 0.646 2.103 sum -2.429 -25.587 6.411 26.490 Atomic orbital electron populations 1.70902 1.06509 1.29322 1.47510 1.26485 0.96556 1.02593 0.95623 0.83140 0.74432 0.73695 0.77063 1.20458 1.21058 1.21003 1.20511 0.94623 0.83844 1.51910 0.88368 1.41932 1.08110 1.05536 1.66116 1.19605 0.88429 0.84186 0.84349 1.90515 1.13558 1.86798 1.54310 1.22081 0.94283 0.91900 1.01321 1.64660 1.23758 0.99808 1.32181 1.23352 0.99251 0.97155 0.89075 1.22887 0.97485 0.93723 1.01612 1.21520 0.90703 0.91964 0.87765 1.45764 1.12902 1.41370 1.36109 1.17137 0.86493 0.78447 0.79547 1.90788 1.15872 1.64299 1.70943 1.20371 0.94971 1.08477 1.06974 1.24117 0.93929 0.97425 0.94961 1.77186 1.09007 1.09664 1.15728 1.46259 1.06376 1.34013 1.30299 0.71029 1.23074 0.93691 0.94537 0.90609 1.22646 0.99329 0.99201 0.94194 1.22531 0.99252 0.96250 0.98198 1.22365 1.02574 0.95252 0.94505 1.23229 0.95925 0.89488 0.96132 0.92022 0.92820 0.79267 0.93491 0.89413 0.88098 0.94612 0.89755 0.90518 0.76945 0.79353 0.79093 0.90249 0.90922 0.91350 0.91932 0.89429 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 13.68 55.50 0.76 -24.59 16 2 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 3 Si 1.09 24.42 29.92 -169.99 -5.09 19.33 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.38 -10.69 9.68 -14.93 -0.14 -10.83 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.58 -14.53 5.28 -10.97 -0.06 -14.59 16 10 C 0.45 10.55 7.59 -10.98 -0.08 10.46 16 11 O -0.57 -15.42 14.42 5.55 0.08 -15.34 16 12 C 0.04 0.63 5.21 -4.98 -0.03 0.60 16 13 N -0.48 -7.77 4.42 -222.83 -0.98 -8.75 16 14 C 0.04 0.64 5.86 -1.93 -0.01 0.63 16 15 C -0.12 -1.66 5.82 -24.96 -0.15 -1.80 16 16 C 0.17 1.96 0.85 -129.60 -0.11 1.85 16 17 N -0.71 -7.02 5.25 -46.62 -0.24 -7.26 16 18 C 0.60 6.55 6.83 -12.52 -0.09 6.47 16 19 O -0.54 -7.52 14.38 5.27 0.08 -7.45 16 20 C -0.29 -2.60 6.13 -105.06 -0.64 -3.24 16 21 C 0.08 0.66 11.50 -16.98 -0.20 0.47 16 22 N -0.29 -2.56 12.63 30.86 0.39 -2.17 16 23 N -0.46 -2.79 7.29 30.85 0.22 -2.56 16 24 H 0.44 1.12 8.96 -182.72 -1.64 -0.51 16 25 C 0.13 0.91 11.82 -16.56 -0.20 0.72 16 26 C -0.12 -1.31 5.63 -25.16 -0.14 -1.45 16 27 C -0.12 -1.22 6.90 -24.78 -0.17 -1.39 16 28 C -0.11 -1.23 6.51 -25.11 -0.16 -1.40 16 29 C 0.06 0.76 3.09 -65.61 -0.20 0.55 16 30 H 0.06 0.67 7.41 -51.93 -0.38 0.28 16 31 H 0.26 7.02 6.78 -40.82 -0.28 6.74 16 32 H 0.37 8.68 6.73 -40.82 -0.27 8.41 16 33 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 34 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 35 H 0.10 1.97 6.91 -51.93 -0.36 1.61 16 36 H 0.04 0.57 7.85 -51.93 -0.41 0.16 16 37 H 0.08 1.22 7.22 -51.93 -0.37 0.85 16 38 H 0.08 1.11 6.76 -51.93 -0.35 0.76 16 39 H 0.40 2.98 7.29 -40.82 -0.30 2.68 16 40 H 0.19 0.95 7.50 -52.49 -0.39 0.56 16 41 H 0.19 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.08 0.96 7.21 -51.93 -0.37 0.59 16 43 H 0.07 0.87 6.71 -51.93 -0.35 0.53 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.17 7.97 -51.93 -0.41 0.75 16 47 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -36.30 378.45 -9.14 -45.45 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.59 Total: 10.98 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.42 Total: 1.26 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.09 Total: -59.93 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.16 Total: -22.79 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.09 Total: 19.33 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.30 -9.14 -45.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676791504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.327 kcal (2) G-P(sol) polarization free energy of solvation -36.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds