Wall clock time and date at job start Wed Apr 1 2020 05:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99952 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99914 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00007 * 3 2 1 7 7 C 1.38950 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99959 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46946 * 180.02562 * 12 10 9 14 14 C 1.48478 * 111.00208 * 69.87714 * 13 12 10 15 15 C 1.54928 * 103.22266 * 159.82386 * 14 13 12 16 16 C 1.54446 * 102.94002 * 322.29395 * 15 14 13 17 17 N 1.46500 * 111.71706 * 260.16487 * 16 15 14 18 18 C 1.34774 * 120.00102 * 298.98752 * 17 16 15 19 19 O 1.21610 * 119.99949 * 359.97438 * 18 17 16 20 20 C 1.47425 * 120.00272 * 180.02562 * 18 17 16 21 21 C 1.41299 * 126.41218 * 0.02562 * 20 18 17 22 22 N 1.30447 * 108.02038 * 179.97438 * 21 20 18 23 23 N 1.39937 * 108.89984 * 0.02562 * 22 21 20 24 24 H 0.96999 * 125.75325 * 180.02562 * 23 22 21 25 25 C 1.34260 * 108.48978 * 359.75131 * 23 22 21 26 26 C 1.54113 * 109.02962 * 136.23156 * 16 15 14 27 27 C 1.54881 * 104.15804 * 222.52214 * 26 16 15 28 28 C 1.54826 * 102.74045 * 38.45270 * 27 26 16 29 29 C 1.47926 * 110.99877 * 187.48935 * 13 12 10 30 30 H 1.08995 * 111.35125 * 336.24879 * 29 13 12 31 31 H 0.96996 * 120.00340 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00486 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.47178 * 300.00469 * 12 10 9 34 34 H 1.09006 * 109.46629 * 60.00665 * 12 10 9 35 35 H 1.08996 * 110.66644 * 278.26329 * 14 13 12 36 36 H 1.09006 * 110.66463 * 41.39192 * 14 13 12 37 37 H 1.09002 * 110.71894 * 80.65805 * 15 14 13 38 38 H 1.09006 * 110.71781 * 203.93124 * 15 14 13 39 39 H 0.96997 * 119.99665 * 118.98908 * 17 16 15 40 40 H 1.07998 * 125.98737 * 359.97438 * 21 20 18 41 41 H 1.08001 * 126.29134 * 180.25220 * 25 23 22 42 42 H 1.09006 * 110.48873 * 341.19013 * 26 16 15 43 43 H 1.08997 * 110.49529 * 103.84904 * 26 16 15 44 44 H 1.08999 * 110.75601 * 156.76284 * 27 26 16 45 45 H 1.08997 * 110.75623 * 279.95337 * 27 26 16 46 46 H 1.08990 * 110.44599 * 80.94029 * 28 27 26 47 47 H 1.09008 * 110.44329 * 203.47220 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2832 2.7465 -0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0034 13 7 2.1982 -5.9794 0.0036 14 6 2.9075 -6.0729 1.3047 15 6 3.4315 -7.5308 1.3188 16 6 2.2794 -8.3187 0.6575 17 7 1.4348 -8.9824 1.6537 18 6 1.9650 -9.9078 2.4777 19 8 3.1444 -10.1922 2.3939 20 6 1.1150 -10.5761 3.4798 21 6 -0.2639 -10.3527 3.6931 22 7 -0.6537 -11.1327 4.6633 23 7 0.4408 -11.8810 5.1110 24 1 0.4246 -12.5377 5.8247 25 6 1.5158 -11.5409 4.3820 26 6 2.8714 -9.3249 -0.3486 27 6 1.9395 -9.2209 -1.5813 28 6 1.6317 -7.7051 -1.6497 29 6 1.5018 -7.2723 -0.1747 30 1 0.4602 -7.2086 0.1397 31 1 -0.4850 -0.8400 -0.0004 32 1 0.3533 -2.3906 0.0016 33 1 0.6180 -4.9200 0.8940 34 1 0.6160 -4.9212 -0.8860 35 1 3.7361 -5.3658 1.3427 36 1 2.2179 -5.9039 2.1318 37 1 4.3454 -7.6178 0.7311 38 1 3.5951 -7.8719 2.3411 39 1 0.4940 -8.7558 1.7202 40 1 -0.8859 -9.6580 3.1484 41 1 2.5116 -11.9463 4.4841 42 1 3.8901 -9.0432 -0.6154 43 1 2.8490 -10.3340 0.0628 44 1 2.4540 -9.5517 -2.4835 45 1 1.0272 -9.7966 -1.4254 46 1 2.4506 -7.1717 -2.1322 47 1 0.6964 -7.5301 -2.1815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676791504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:29 Heat of formation + Delta-G solvation = -12.949979 kcal Electronic energy + Delta-G solvation = -30820.811343 eV Core-core repulsion = 26617.862666 eV Total energy + Delta-G solvation = -4202.948677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40145 -41.70526 -40.23810 -39.23210 -36.57046 -35.81142 -34.76924 -33.24130 -32.91101 -32.24032 -31.09071 -29.49774 -27.75567 -27.10900 -25.56309 -24.39757 -22.96027 -22.61553 -21.73873 -21.36635 -20.66708 -20.34395 -19.93409 -19.47086 -18.31183 -17.52375 -17.00729 -16.70044 -16.55138 -16.27310 -16.07621 -15.69859 -15.55523 -15.50913 -15.34196 -15.15287 -14.87829 -14.70789 -14.39572 -14.04688 -13.82507 -13.43331 -13.33881 -12.95987 -12.84583 -12.64553 -12.52994 -12.21178 -12.13641 -11.93736 -11.91775 -11.91501 -11.84746 -11.72738 -11.48572 -11.39923 -10.86952 -10.79604 -10.35147 -10.10079 -10.06877 -9.75177 -9.39230 -8.90236 -6.03667 0.56145 1.15231 1.53730 1.54868 1.75830 1.82776 2.04168 2.19975 2.42020 2.48207 2.76422 3.12033 3.18770 3.35853 3.57495 3.66078 3.81992 3.91232 4.08059 4.11823 4.14864 4.22639 4.24461 4.32784 4.37829 4.38469 4.43682 4.50992 4.67049 4.71526 4.79618 4.85273 4.93258 5.03821 5.07347 5.14580 5.22362 5.26755 5.33364 5.44803 5.62274 5.62696 5.84969 5.98929 6.07867 6.20989 6.45745 6.61089 6.66039 6.78914 7.33831 7.47631 7.97856 8.57875 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.002368 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.850041 B =11821.135770 C =12683.257684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.043 4.043 3 Si 1.131 2.869 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.407 4.407 8 H 0.071 0.929 9 N -0.589 5.589 10 C 0.446 3.554 11 O -0.610 6.610 12 C 0.049 3.951 13 N -0.500 5.500 14 C 0.043 3.957 15 C -0.110 4.110 16 C 0.175 3.825 17 N -0.701 5.701 18 C 0.597 3.403 19 O -0.577 6.577 20 C -0.318 4.318 21 C 0.088 3.912 22 N -0.323 5.323 23 N -0.452 5.452 24 H 0.459 0.541 25 C 0.145 3.855 26 C -0.113 4.113 27 C -0.113 4.113 28 C -0.107 4.107 29 C 0.065 3.935 30 H 0.090 0.910 31 H 0.260 0.740 32 H 0.384 0.616 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.410 0.590 40 H 0.213 0.787 41 H 0.212 0.788 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.199 -26.650 5.577 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.241 4.241 3 Si 0.952 3.048 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.536 4.536 8 H 0.089 0.911 9 N -0.229 5.229 10 C 0.234 3.766 11 O -0.495 6.495 12 C -0.082 4.082 13 N -0.224 5.224 14 C -0.084 4.084 15 C -0.149 4.149 16 C 0.088 3.912 17 N -0.353 5.353 18 C 0.386 3.614 19 O -0.457 6.457 20 C -0.333 4.333 21 C -0.100 4.100 22 N -0.144 5.144 23 N -0.158 5.158 24 H 0.307 0.693 25 C -0.009 4.009 26 C -0.152 4.152 27 C -0.150 4.150 28 C -0.146 4.146 29 C -0.044 4.044 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.218 0.782 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.248 0.752 40 H 0.229 0.771 41 H 0.229 0.771 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.401 -25.438 5.818 26.315 hybrid contribution -0.350 -1.359 0.683 1.561 sum -3.751 -26.797 6.501 27.828 Atomic orbital electron populations 1.70967 1.06922 1.29494 1.48380 1.27753 0.96726 1.05200 0.94389 0.82653 0.73833 0.70517 0.77839 1.19678 1.19981 1.19910 1.20470 0.93778 0.85705 1.53642 0.91131 1.41978 1.08551 1.05425 1.66928 1.20770 0.88323 0.85744 0.81762 1.90498 1.15849 1.87756 1.55411 1.21964 0.93858 0.88728 1.03691 1.64588 1.24581 1.01294 1.31959 1.23165 0.98206 0.97445 0.89631 1.22765 0.98107 0.92756 1.01320 1.21332 0.90059 0.91912 0.87905 1.45602 1.13369 1.40847 1.35450 1.17415 0.86210 0.78160 0.79589 1.90773 1.17459 1.65508 1.71998 1.20307 0.95404 1.09905 1.07714 1.24488 0.93674 0.97282 0.94571 1.77151 1.10230 1.10586 1.16481 1.46283 1.05613 1.33684 1.30227 0.69297 1.23425 0.94491 0.93456 0.89567 1.22586 0.99111 0.98576 0.94943 1.22483 0.99618 0.95344 0.97577 1.22352 1.02665 0.95940 0.93617 1.23338 0.96904 0.87179 0.96976 0.89233 0.92948 0.78169 0.90986 0.86738 0.92304 0.94167 0.91015 0.91135 0.75248 0.77091 0.77105 0.91711 0.91393 0.90484 0.89983 0.91845 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.25 13.68 21.66 0.30 -50.95 16 2 C -0.04 -2.33 5.50 84.93 0.47 -1.86 16 3 Si 1.13 49.01 29.92 68.60 2.05 51.07 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.41 -23.38 9.68 84.04 0.81 -22.57 16 8 H 0.07 4.38 7.16 -2.91 -0.02 4.36 16 9 N -0.59 -29.90 5.28 -306.99 -1.62 -31.52 16 10 C 0.45 21.18 7.59 87.66 0.66 21.85 16 11 O -0.61 -34.26 14.42 -3.07 -0.04 -34.31 16 12 C 0.05 1.63 5.21 85.56 0.45 2.07 16 13 N -0.50 -15.76 4.42 -858.91 -3.79 -19.56 16 14 C 0.04 1.44 5.86 86.66 0.51 1.95 16 15 C -0.11 -3.15 5.82 31.74 0.18 -2.97 16 16 C 0.18 3.87 0.85 5.04 0.00 3.88 16 17 N -0.70 -12.38 5.25 -419.66 -2.20 -14.58 16 18 C 0.60 12.29 6.83 86.66 0.59 12.88 16 19 O -0.58 -15.75 14.38 -4.06 -0.06 -15.81 16 20 C -0.32 -5.05 6.13 -20.15 -0.12 -5.17 16 21 C 0.09 1.18 11.50 85.65 0.99 2.17 16 22 N -0.32 -4.93 12.63 -56.27 -0.71 -5.65 16 23 N -0.45 -4.48 7.29 -56.32 -0.41 -4.89 16 24 H 0.46 1.35 8.96 -213.43 -1.91 -0.56 16 25 C 0.15 1.70 11.82 84.28 1.00 2.69 16 26 C -0.11 -2.45 5.63 31.61 0.18 -2.27 16 27 C -0.11 -1.90 6.90 31.86 0.22 -1.68 16 28 C -0.11 -2.17 6.51 31.65 0.21 -1.96 16 29 C 0.06 1.43 3.09 45.72 0.14 1.57 16 30 H 0.09 1.53 7.41 -2.39 -0.02 1.52 16 31 H 0.26 13.94 6.78 -92.71 -0.63 13.31 16 32 H 0.38 17.76 6.73 -92.71 -0.62 17.13 16 33 H 0.07 2.07 7.90 -2.39 -0.02 2.05 16 34 H 0.11 3.23 8.11 -2.38 -0.02 3.21 16 35 H 0.06 2.45 6.91 -2.39 -0.02 2.43 16 36 H 0.04 1.28 7.85 -2.38 -0.02 1.26 16 37 H 0.07 2.20 7.22 -2.39 -0.02 2.18 16 38 H 0.07 2.09 6.76 -2.38 -0.02 2.07 16 39 H 0.41 4.87 7.29 -92.71 -0.68 4.19 16 40 H 0.21 1.50 7.50 -2.91 -0.02 1.47 16 41 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.06 1.57 7.21 -2.38 -0.02 1.56 16 43 H 0.07 1.55 6.71 -2.39 -0.02 1.54 16 44 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.62 7.97 -2.39 -0.02 1.60 16 47 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -80.90 378.45 -2.23 -83.13 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: -2.02 Total: 32.49 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 6.28 Total: 10.58 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -8.44 Total: -127.15 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -0.10 Total: -50.11 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.05 Total: 51.07 kcal Total: -80.90 -2.23 -83.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676791504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.181 kcal (2) G-P(sol) polarization free energy of solvation -80.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds