Wall clock time and date at job start Wed Apr 1 2020 05:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47624 * 179.97438 * 14 13 12 16 16 H 1.09007 * 110.43060 * 305.69877 * 15 14 13 17 17 C 1.54889 * 110.48775 * 68.23642 * 15 14 13 18 18 C 1.55026 * 102.68236 * 156.51806 * 17 15 14 19 19 C 1.54265 * 104.28581 * 322.23839 * 18 17 15 20 20 H 1.08996 * 110.07847 * 142.82060 * 19 18 17 21 21 N 1.46504 * 110.03107 * 264.23195 * 19 18 17 22 22 C 1.34770 * 120.00119 * 272.16222 * 21 19 18 23 23 O 1.21556 * 119.99862 * 0.02562 * 22 21 19 24 24 C 1.47831 * 120.00267 * 180.02562 * 22 21 19 25 25 C 1.39950 * 120.93668 * 359.72165 * 24 22 21 26 26 N 1.32147 * 118.92202 * 179.74503 * 25 24 22 27 27 C 1.31872 * 120.96610 * 0.52084 * 26 25 24 28 28 N 1.31863 * 122.09754 * 359.74786 * 27 26 25 29 29 C 1.32151 * 120.96569 * 359.97438 * 28 27 26 30 30 C 1.53880 * 106.59750 * 23.51520 * 19 18 17 31 31 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 34 34 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 35 35 H 1.00898 * 111.00484 * 56.03940 * 13 12 10 36 36 H 1.09004 * 109.46960 * 299.99557 * 14 13 12 37 37 H 1.09004 * 109.47385 * 59.99759 * 14 13 12 38 38 H 1.08996 * 110.75665 * 274.94053 * 17 15 14 39 39 H 1.09004 * 110.75383 * 38.31315 * 17 15 14 40 40 H 1.09001 * 110.52851 * 203.48778 * 18 17 15 41 41 H 1.09005 * 110.48042 * 80.95908 * 18 17 15 42 42 H 0.97006 * 119.99803 * 92.16519 * 21 19 18 43 43 H 1.08000 * 120.53676 * 359.97438 * 25 24 22 44 44 H 1.08001 * 118.94723 * 179.72613 * 27 26 25 45 45 H 1.07995 * 120.53477 * 180.02562 * 29 28 27 46 46 H 1.09000 * 110.03235 * 240.72055 * 30 19 18 47 47 H 1.08996 * 110.03393 * 119.28471 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 7 6.0504 -3.7555 -0.0194 14 6 7.5188 -3.7948 -0.0267 15 6 7.9902 -5.2503 -0.0314 16 1 7.5444 -5.7973 0.7995 17 6 7.6387 -5.9296 -1.3783 18 6 8.6667 -7.0876 -1.4539 19 6 9.9597 -6.4878 -0.8640 20 1 10.4872 -7.2398 -0.2771 21 7 10.8224 -5.9969 -1.9416 22 6 11.7034 -6.8289 -2.5315 23 8 11.7820 -7.9867 -2.1697 24 6 12.5742 -6.3334 -3.6184 25 6 12.4962 -5.0058 -4.0543 26 7 13.2971 -4.6039 -5.0255 27 6 14.1520 -5.4357 -5.5880 28 7 14.2546 -6.6954 -5.2119 29 6 13.4960 -7.1801 -4.2445 30 6 9.5296 -5.3196 0.0405 31 1 -0.4850 0.8400 0.0004 32 1 3.8649 -0.3633 -0.0014 33 1 5.9200 -1.8545 -0.9044 34 1 5.9282 -1.8591 0.8755 35 1 5.6713 -4.2702 -0.8000 36 1 7.8913 -3.2890 -0.9176 37 1 7.9002 -3.2926 0.8624 38 1 6.6194 -6.3154 -1.3619 39 1 7.7774 -5.2366 -2.2082 40 1 8.8246 -7.3915 -2.4887 41 1 8.3316 -7.9348 -0.8554 42 1 10.7594 -5.0730 -2.2305 43 1 11.7953 -4.3200 -3.6017 44 1 14.7882 -5.0736 -6.3821 45 1 13.5861 -8.2128 -3.9418 46 1 9.9626 -4.3874 -0.3223 47 1 9.8475 -5.5050 1.0665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676921152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:21 Heat of formation + Delta-G solvation = -22.645457 kcal Electronic energy + Delta-G solvation = -28815.005247 eV Core-core repulsion = 24611.636143 eV Total energy + Delta-G solvation = -4203.369104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.82288 -40.27695 -38.76192 -38.22202 -35.65312 -34.61317 -34.04421 -33.71837 -32.66661 -31.67993 -29.93875 -28.79222 -26.80581 -25.69093 -25.14083 -24.28403 -22.93818 -21.94765 -20.70125 -20.09920 -19.37673 -18.72079 -18.34558 -18.26871 -17.77769 -16.81189 -16.16260 -15.97857 -15.70757 -15.57749 -15.18652 -14.85431 -14.72141 -14.39738 -14.26594 -14.20786 -13.88635 -13.74838 -13.45547 -13.09929 -12.93880 -12.37785 -12.27409 -12.16329 -12.05502 -11.92751 -11.67117 -11.57072 -11.32919 -11.19244 -11.09488 -10.84751 -10.72740 -10.61633 -10.46045 -10.40907 -9.99462 -9.96843 -9.59382 -9.57597 -8.61667 -8.21980 -8.16203 -6.32946 -3.84504 -0.22720 0.35823 2.25547 2.48549 3.00570 3.04387 3.13107 3.17403 3.36638 3.48967 3.71922 3.75503 3.97335 4.02228 4.08332 4.13929 4.30717 4.35579 4.56313 4.65279 4.82006 5.02230 5.06072 5.07589 5.08962 5.19078 5.20680 5.31446 5.33342 5.44102 5.52090 5.58460 5.59342 5.66735 5.77446 5.80595 5.83588 5.91337 5.96382 6.10919 6.16778 6.20136 6.85925 7.07355 7.31561 7.54810 7.56833 7.57236 8.12628 8.57824 8.93082 9.40455 9.80663 10.80169 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.001658 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.285297 B =16882.979111 C =17979.806651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.668 5.668 14 C 0.067 3.933 15 C -0.090 4.090 16 H 0.091 0.909 17 C -0.124 4.124 18 C -0.132 4.132 19 C 0.141 3.859 20 H 0.095 0.905 21 N -0.714 5.714 22 C 0.569 3.431 23 O -0.527 6.527 24 C -0.243 4.243 25 C 0.184 3.816 26 N -0.521 5.521 27 C 0.315 3.685 28 N -0.521 5.521 29 C 0.209 3.791 30 C -0.124 4.124 31 H 0.273 0.727 32 H 0.370 0.630 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.351 0.649 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.398 0.602 43 H 0.171 0.829 44 H 0.204 0.796 45 H 0.183 0.817 46 H 0.072 0.928 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.086 -8.504 -6.869 32.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.301 5.301 14 C -0.063 4.063 15 C -0.109 4.109 16 H 0.109 0.891 17 C -0.162 4.162 18 C -0.170 4.170 19 C 0.037 3.963 20 H 0.113 0.887 21 N -0.366 5.366 22 C 0.354 3.646 23 O -0.404 6.404 24 C -0.251 4.251 25 C 0.017 3.983 26 N -0.234 5.234 27 C 0.029 3.971 28 N -0.234 5.234 29 C 0.042 3.958 30 C -0.163 4.163 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.170 0.830 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.234 0.766 43 H 0.188 0.812 44 H 0.220 0.780 45 H 0.199 0.801 46 H 0.091 0.909 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 30.054 -9.659 -6.650 32.261 hybrid contribution 0.161 2.026 -0.408 2.073 sum 30.215 -7.633 -7.058 31.954 Atomic orbital electron populations 1.69622 1.05642 1.27502 1.49325 1.25043 0.95497 0.97978 0.97650 0.86667 0.79804 0.84050 0.78834 1.19674 1.20151 1.19488 1.19439 0.79255 0.96642 1.48105 0.86282 1.42211 1.07539 1.06160 1.67107 1.19722 0.88227 0.84560 0.84009 1.90566 1.69442 1.30934 1.53683 1.21704 0.95043 0.90564 1.01186 1.60052 1.05913 1.12623 1.51537 1.22009 0.88583 0.95522 1.00160 1.22026 0.93723 0.96171 0.98938 0.89062 1.22652 0.99708 0.97016 0.96828 1.22783 0.94253 0.98447 1.01535 1.21724 0.90721 0.96677 0.87183 0.88712 1.46120 1.38576 1.14002 1.37884 1.17771 0.79704 0.85724 0.81419 1.90821 1.68975 1.17061 1.63532 1.21849 1.03184 0.97600 1.02420 1.23498 0.92865 0.92478 0.89471 1.68503 1.06466 1.38635 1.09783 1.25347 0.91553 0.85088 0.95117 1.68611 1.24635 1.16015 1.14180 1.23566 0.85429 1.00390 0.86379 1.22487 0.96236 0.97551 1.00030 0.91605 0.79708 0.93888 0.89527 0.82961 0.95625 0.91079 0.90433 0.91758 0.91338 0.90314 0.76600 0.81173 0.77996 0.80053 0.90923 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.96 55.50 0.77 -24.80 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.11 27.74 -169.99 -4.71 14.39 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 7 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 9 N -0.59 -13.87 5.09 -10.96 -0.06 -13.93 16 10 C 0.45 10.00 7.82 -10.99 -0.09 9.92 16 11 O -0.56 -14.97 15.78 5.55 0.09 -14.88 16 12 C 0.05 0.76 6.17 -4.98 -0.03 0.72 16 13 N -0.67 -9.58 6.13 -115.06 -0.70 -10.29 16 14 C 0.07 0.66 5.02 -3.83 -0.02 0.64 16 15 C -0.09 -0.73 3.10 -88.96 -0.28 -1.01 16 16 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.12 -1.02 5.63 -24.66 -0.14 -1.16 16 18 C -0.13 -1.01 6.54 -25.00 -0.16 -1.17 16 19 C 0.14 0.95 3.25 -66.81 -0.22 0.73 16 20 H 0.09 0.75 7.56 -51.93 -0.39 0.36 16 21 N -0.71 -4.12 4.99 -53.67 -0.27 -4.39 16 22 C 0.57 4.45 7.78 -12.34 -0.10 4.35 16 23 O -0.53 -5.91 16.10 5.32 0.09 -5.82 16 24 C -0.24 -1.60 5.91 -104.69 -0.62 -2.22 16 25 C 0.18 1.01 10.81 -16.78 -0.18 0.83 16 26 N -0.52 -3.51 10.42 -14.24 -0.15 -3.66 16 27 C 0.32 1.91 12.27 -92.03 -1.13 0.78 16 28 N -0.52 -3.82 10.42 -14.25 -0.15 -3.96 16 29 C 0.21 1.48 10.88 -16.78 -0.18 1.30 16 30 C -0.12 -0.74 6.14 -25.61 -0.16 -0.90 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.35 5.26 7.62 -39.29 -0.30 4.96 16 36 H 0.03 0.22 8.06 -51.93 -0.42 -0.19 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.74 8.02 -51.93 -0.42 0.33 16 39 H 0.06 0.51 8.00 -51.93 -0.42 0.09 16 40 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.40 1.35 6.46 -40.82 -0.26 1.08 16 43 H 0.17 0.42 6.54 -52.49 -0.34 0.07 16 44 H 0.20 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.18 1.11 7.74 -52.49 -0.41 0.71 16 46 H 0.07 0.35 7.31 -51.93 -0.38 -0.03 16 47 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -35.70 392.05 -9.23 -44.93 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.50 Total: 11.40 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -3.54 Total: 5.10 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.55 Total: -61.03 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.17 Total: -20.70 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.70 -9.23 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676921152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.287 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds