Wall clock time and date at job start Wed Apr 1 2020 05:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47624 * 179.97438 * 14 13 12 16 16 H 1.09007 * 110.43060 * 305.69877 * 15 14 13 17 17 C 1.54889 * 110.48775 * 68.23642 * 15 14 13 18 18 C 1.55026 * 102.68236 * 156.51806 * 17 15 14 19 19 C 1.54265 * 104.28581 * 322.23839 * 18 17 15 20 20 H 1.08996 * 110.07847 * 142.82060 * 19 18 17 21 21 N 1.46504 * 110.03107 * 264.23195 * 19 18 17 22 22 C 1.34770 * 120.00119 * 272.16222 * 21 19 18 23 23 O 1.21556 * 119.99862 * 0.02562 * 22 21 19 24 24 C 1.47831 * 120.00267 * 180.02562 * 22 21 19 25 25 C 1.39950 * 120.93668 * 359.72165 * 24 22 21 26 26 N 1.32147 * 118.92202 * 179.74503 * 25 24 22 27 27 C 1.31872 * 120.96610 * 0.52084 * 26 25 24 28 28 N 1.31863 * 122.09754 * 359.74786 * 27 26 25 29 29 C 1.32151 * 120.96569 * 359.97438 * 28 27 26 30 30 C 1.53880 * 106.59750 * 23.51520 * 19 18 17 31 31 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 34 34 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 35 35 H 1.00898 * 111.00484 * 56.03940 * 13 12 10 36 36 H 1.09004 * 109.46960 * 299.99557 * 14 13 12 37 37 H 1.09004 * 109.47385 * 59.99759 * 14 13 12 38 38 H 1.08996 * 110.75665 * 274.94053 * 17 15 14 39 39 H 1.09004 * 110.75383 * 38.31315 * 17 15 14 40 40 H 1.09001 * 110.52851 * 203.48778 * 18 17 15 41 41 H 1.09005 * 110.48042 * 80.95908 * 18 17 15 42 42 H 0.97006 * 119.99803 * 92.16519 * 21 19 18 43 43 H 1.08000 * 120.53676 * 359.97438 * 25 24 22 44 44 H 1.08001 * 118.94723 * 179.72613 * 27 26 25 45 45 H 1.07995 * 120.53477 * 180.02562 * 29 28 27 46 46 H 1.09000 * 110.03235 * 240.72055 * 30 19 18 47 47 H 1.08996 * 110.03393 * 119.28471 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 7 6.0504 -3.7555 -0.0194 14 6 7.5188 -3.7948 -0.0267 15 6 7.9902 -5.2503 -0.0314 16 1 7.5444 -5.7973 0.7995 17 6 7.6387 -5.9296 -1.3783 18 6 8.6667 -7.0876 -1.4539 19 6 9.9597 -6.4878 -0.8640 20 1 10.4872 -7.2398 -0.2771 21 7 10.8224 -5.9969 -1.9416 22 6 11.7034 -6.8289 -2.5315 23 8 11.7820 -7.9867 -2.1697 24 6 12.5742 -6.3334 -3.6184 25 6 12.4962 -5.0058 -4.0543 26 7 13.2971 -4.6039 -5.0255 27 6 14.1520 -5.4357 -5.5880 28 7 14.2546 -6.6954 -5.2119 29 6 13.4960 -7.1801 -4.2445 30 6 9.5296 -5.3196 0.0405 31 1 -0.4850 0.8400 0.0004 32 1 3.8649 -0.3633 -0.0014 33 1 5.9200 -1.8545 -0.9044 34 1 5.9282 -1.8591 0.8755 35 1 5.6713 -4.2702 -0.8000 36 1 7.8913 -3.2890 -0.9176 37 1 7.9002 -3.2926 0.8624 38 1 6.6194 -6.3154 -1.3619 39 1 7.7774 -5.2366 -2.2082 40 1 8.8246 -7.3915 -2.4887 41 1 8.3316 -7.9348 -0.8554 42 1 10.7594 -5.0730 -2.2305 43 1 11.7953 -4.3200 -3.6017 44 1 14.7882 -5.0736 -6.3821 45 1 13.5861 -8.2128 -3.9418 46 1 9.9626 -4.3874 -0.3223 47 1 9.8475 -5.5050 1.0665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676921152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:20 Heat of formation + Delta-G solvation = -51.031028 kcal Electronic energy + Delta-G solvation = -28816.236138 eV Core-core repulsion = 24611.636143 eV Total energy + Delta-G solvation = -4204.599995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30333 -40.87064 -40.27940 -39.15478 -36.66653 -35.88806 -35.12807 -34.47729 -33.73583 -33.20236 -30.77715 -29.45568 -28.07775 -26.36006 -25.79354 -25.48949 -23.96268 -22.52988 -21.41548 -21.16678 -20.74915 -20.18598 -19.19976 -18.73094 -18.25754 -17.89192 -17.25061 -17.02593 -16.71149 -16.45902 -16.24158 -15.86278 -15.61909 -15.36311 -15.12806 -14.91972 -14.76935 -14.69855 -14.55912 -14.32972 -14.08046 -14.00653 -13.40337 -13.08939 -12.82203 -12.76876 -12.72466 -12.50870 -12.40290 -12.04976 -11.99352 -11.93662 -11.74182 -11.53752 -11.50294 -11.40424 -11.08186 -10.91407 -10.43750 -10.41501 -10.23905 -10.14265 -9.24500 -8.40406 -6.01567 -0.69327 -0.10094 1.31366 1.36827 1.46106 1.69370 1.95646 1.97750 2.24294 2.69943 2.77326 3.00428 3.06825 3.16280 3.31645 3.43957 3.55047 3.59080 3.72044 3.81954 3.96129 4.18606 4.28947 4.37587 4.41838 4.49194 4.53393 4.57498 4.60144 4.61989 4.63547 4.72378 4.90195 4.90608 5.06566 5.14732 5.16369 5.17261 5.33086 5.49795 5.54562 5.57188 5.71713 5.93007 6.13079 6.38007 6.46493 6.61211 6.86821 6.89378 7.04960 7.41271 7.98468 8.77317 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.001658 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.285297 B =16882.979111 C =17979.806651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.967 3.033 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.229 1.229 7 C -0.330 4.330 8 H 0.053 0.947 9 N -0.591 5.591 10 C 0.446 3.554 11 O -0.616 6.616 12 C 0.063 3.937 13 N -0.691 5.691 14 C 0.069 3.931 15 C -0.085 4.085 16 H 0.073 0.927 17 C -0.121 4.121 18 C -0.129 4.129 19 C 0.145 3.855 20 H 0.083 0.917 21 N -0.699 5.699 22 C 0.571 3.429 23 O -0.568 6.568 24 C -0.249 4.249 25 C 0.192 3.808 26 N -0.535 5.535 27 C 0.314 3.686 28 N -0.540 5.540 29 C 0.200 3.800 30 C -0.112 4.112 31 H 0.279 0.721 32 H 0.390 0.610 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.343 0.657 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.413 0.587 43 H 0.203 0.797 44 H 0.230 0.770 45 H 0.181 0.819 46 H 0.096 0.904 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.616 -5.288 -7.110 34.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.786 3.214 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.153 1.153 7 C -0.460 4.460 8 H 0.071 0.929 9 N -0.233 5.233 10 C 0.234 3.766 11 O -0.501 6.501 12 C -0.070 4.070 13 N -0.324 5.324 14 C -0.060 4.060 15 C -0.104 4.104 16 H 0.091 0.909 17 C -0.159 4.159 18 C -0.168 4.168 19 C 0.041 3.959 20 H 0.101 0.899 21 N -0.351 5.351 22 C 0.357 3.643 23 O -0.448 6.448 24 C -0.256 4.256 25 C 0.025 3.975 26 N -0.248 5.248 27 C 0.028 3.972 28 N -0.253 5.253 29 C 0.033 3.967 30 C -0.150 4.150 31 H 0.088 0.912 32 H 0.226 0.774 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.161 0.839 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.252 0.748 43 H 0.220 0.780 44 H 0.247 0.753 45 H 0.198 0.802 46 H 0.115 0.885 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 33.620 -6.422 -6.890 34.915 hybrid contribution -0.998 0.868 -0.358 1.371 sum 32.622 -5.554 -7.247 33.876 Atomic orbital electron populations 1.69812 1.08217 1.29249 1.50323 1.26151 0.96484 1.02822 0.96037 0.85341 0.79526 0.76533 0.79960 1.18060 1.20171 1.15255 1.19012 0.81647 0.94876 1.50418 0.92855 1.42037 1.05734 1.07681 1.67841 1.21118 0.91264 0.83223 0.80980 1.90546 1.71516 1.32883 1.55129 1.21629 0.89150 0.92185 1.04009 1.60059 1.08868 1.11801 1.51688 1.22121 0.85576 0.96509 1.01749 1.21937 0.95272 0.95248 0.97990 0.90899 1.22596 0.98564 0.97259 0.97437 1.22725 0.94847 0.98243 1.00948 1.21604 0.90015 0.96956 0.87339 0.89925 1.45975 1.37538 1.14494 1.37134 1.17927 0.79740 0.85261 0.81352 1.90805 1.70268 1.18840 1.64852 1.21718 1.03259 0.98226 1.02430 1.23979 0.92577 0.92257 0.88668 1.68603 1.07044 1.38821 1.10381 1.25936 0.91418 0.84621 0.95231 1.68655 1.25192 1.16832 1.14631 1.23669 0.85707 1.00731 0.86562 1.22394 0.94232 0.98044 1.00347 0.91175 0.77414 0.90367 0.86855 0.83862 0.93227 0.89933 0.92565 0.90757 0.92199 0.91116 0.74812 0.78040 0.75348 0.80155 0.88546 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.16 13.96 21.66 0.30 -55.86 16 2 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 3 Si 0.97 37.94 27.74 68.60 1.90 39.84 16 4 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 5 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.23 -7.46 6.52 99.48 0.65 -6.81 16 7 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 8 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 9 N -0.59 -27.28 5.09 -306.98 -1.56 -28.84 16 10 C 0.45 19.62 7.82 87.66 0.69 20.30 16 11 O -0.62 -33.84 15.78 -3.07 -0.05 -33.89 16 12 C 0.06 1.75 6.17 85.56 0.53 2.28 16 13 N -0.69 -18.26 6.13 -517.94 -3.17 -21.43 16 14 C 0.07 1.08 5.02 86.30 0.43 1.52 16 15 C -0.09 -1.20 3.10 -9.72 -0.03 -1.23 16 16 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 17 C -0.12 -1.84 5.63 31.93 0.18 -1.66 16 18 C -0.13 -1.91 6.54 31.72 0.21 -1.70 16 19 C 0.15 1.70 3.25 45.72 0.15 1.85 16 20 H 0.08 1.24 7.56 -2.39 -0.02 1.22 16 21 N -0.70 -6.41 4.99 -441.98 -2.20 -8.61 16 22 C 0.57 8.29 7.78 86.78 0.68 8.96 16 23 O -0.57 -12.78 16.10 -3.89 -0.06 -12.84 16 24 C -0.25 -2.95 5.91 -19.91 -0.12 -3.07 16 25 C 0.19 1.61 10.81 85.06 0.92 2.53 16 26 N -0.54 -5.96 10.42 -198.98 -2.07 -8.03 16 27 C 0.31 3.26 12.27 180.84 2.22 5.48 16 28 N -0.54 -7.45 10.42 -198.99 -2.07 -9.53 16 29 C 0.20 2.75 10.88 85.06 0.93 3.68 16 30 C -0.11 -0.96 6.14 31.32 0.19 -0.77 16 31 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.39 14.67 5.76 -92.71 -0.53 14.14 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.34 9.94 7.62 -89.70 -0.68 9.26 16 36 H 0.05 0.59 8.06 -2.38 -0.02 0.57 16 37 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.06 1.10 8.02 -2.39 -0.02 1.08 16 39 H 0.07 0.99 8.00 -2.38 -0.02 0.97 16 40 H 0.06 0.99 8.04 -2.39 -0.02 0.97 16 41 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.41 1.20 6.46 -92.70 -0.60 0.61 16 43 H 0.20 0.16 6.54 -2.91 -0.02 0.14 16 44 H 0.23 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.18 2.34 7.74 -2.91 -0.02 2.31 16 46 H 0.10 0.42 7.31 -2.39 -0.02 0.40 16 47 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -84.82 392.05 -1.55 -86.36 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.84 Total: 33.48 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 8.29 Total: 19.35 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -10.79 Total: -132.31 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -0.11 Total: -46.73 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.90 Total: 39.84 kcal Total: -84.82 -1.55 -86.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676921152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.333 kcal (2) G-P(sol) polarization free energy of solvation -84.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds