Wall clock time and date at job start Wed Apr 1 2020 04:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48503 * 109.47140 * 269.99931 * 3 2 1 5 5 H 1.48501 * 109.47097 * 29.99621 * 3 2 1 6 6 H 1.48500 * 109.47158 * 149.99817 * 3 2 1 7 7 C 1.38948 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00196 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00092 * 180.02562 * 7 2 1 10 10 C 1.34778 * 120.00357 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99573 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00201 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47111 * 180.02562 * 12 10 9 14 14 C 1.46849 * 111.00101 * 293.95844 * 13 12 10 15 15 C 1.53035 * 109.52001 * 174.15978 * 14 13 12 16 16 C 1.53119 * 109.28293 * 59.17757 * 15 14 13 17 17 C 1.53120 * 109.15866 * 302.34724 * 16 15 14 18 18 H 1.08991 * 109.50279 * 297.66533 * 17 16 15 19 19 C 1.53005 * 109.50172 * 177.58790 * 17 16 15 20 20 N 1.46505 * 109.46784 * 64.99910 * 19 17 16 21 21 C 1.34777 * 120.00115 * 179.97438 * 20 19 17 22 22 O 1.21282 * 119.99620 * 359.97438 * 21 20 19 23 23 C 1.50697 * 120.00369 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47466 * 180.02562 * 23 21 20 25 25 C 1.53000 * 109.47060 * 180.02562 * 24 23 21 26 26 F 1.39905 * 109.46696 * 175.00228 * 25 24 23 27 27 F 1.39896 * 109.47174 * 294.99637 * 25 24 23 28 28 C 1.46849 * 110.99776 * 169.74523 * 13 12 10 29 29 H 0.96996 * 120.00101 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99924 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47180 * 60.00519 * 12 10 9 32 32 H 1.08994 * 109.47358 * 300.00453 * 12 10 9 33 33 H 1.08991 * 109.46064 * 54.14554 * 14 13 12 34 34 H 1.08991 * 109.45259 * 294.16654 * 14 13 12 35 35 H 1.08999 * 109.50742 * 299.24004 * 15 14 13 36 36 H 1.09002 * 109.50151 * 179.12127 * 15 14 13 37 37 H 1.08993 * 109.52811 * 182.43754 * 16 15 14 38 38 H 1.09005 * 109.57135 * 62.27698 * 16 15 14 39 39 H 1.09002 * 109.47193 * 305.00468 * 19 17 16 40 40 H 1.08992 * 109.47333 * 184.99466 * 19 17 16 41 41 H 0.97003 * 120.00244 * 359.97438 * 20 19 17 42 42 H 1.09002 * 109.47120 * 59.99760 * 23 21 20 43 43 H 1.08998 * 109.46862 * 300.00562 * 23 21 20 44 44 H 1.09002 * 109.47153 * 59.99773 * 24 23 21 45 45 H 1.09001 * 109.46832 * 299.99964 * 24 23 21 46 46 H 1.08990 * 109.47170 * 54.99895 * 25 24 23 47 47 H 1.08998 * 109.45964 * 65.83024 * 28 13 12 48 48 H 1.08994 * 109.46408 * 305.85920 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0021 11 8 3.4473 -3.4209 0.0021 12 6 5.5607 -2.3705 0.0021 13 7 6.0504 -3.7555 0.0027 14 6 5.7010 -4.4367 1.2559 15 6 6.0963 -5.9122 1.1632 16 6 7.6021 -6.0171 0.9062 17 6 7.9466 -5.2586 -0.3786 18 1 7.4337 -5.7202 -1.2223 19 6 9.4581 -5.3075 -0.6109 20 7 9.8699 -6.6919 -0.8562 21 6 11.1662 -6.9783 -1.0885 22 8 11.9918 -6.0899 -1.0948 23 6 11.5898 -8.4023 -1.3414 24 6 13.1012 -8.4513 -1.5736 25 6 13.5311 -9.8969 -1.8310 26 9 14.8916 -9.9281 -2.1555 27 9 13.3084 -10.6615 -0.6807 28 6 7.4977 -3.8020 -0.2413 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0014 31 1 5.9241 -1.8559 0.8917 32 1 5.9241 -1.8574 -0.8882 33 1 4.6271 -4.3583 1.4245 34 1 6.2338 -3.9693 2.0839 35 1 5.5537 -6.3836 0.3439 36 1 5.8511 -6.4141 2.0992 37 1 7.8808 -7.0650 0.7964 38 1 8.1468 -5.5811 1.7437 39 1 9.9737 -4.9259 0.2703 40 1 9.7129 -4.6942 -1.4751 41 1 9.2096 -7.4025 -0.8515 42 1 11.0739 -8.7838 -2.2225 43 1 11.3352 -9.0159 -0.4773 44 1 13.6168 -8.0700 -0.6922 45 1 13.3561 -7.8375 -2.4375 46 1 12.9509 -10.3068 -2.6576 47 1 8.0219 -3.3376 0.5939 48 1 7.7287 -3.2627 -1.1599 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690384865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:05 Heat of formation + Delta-G solvation = -185.947283 kcal Electronic energy + Delta-G solvation = -29836.736106 eV Core-core repulsion = 25175.596517 eV Total energy + Delta-G solvation = -4661.139589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.42157 -47.43390 -40.31042 -39.36710 -37.96439 -35.59385 -34.31222 -33.99768 -33.03327 -31.69223 -31.42030 -28.18103 -27.60079 -25.71069 -24.60499 -22.96325 -22.79091 -21.70882 -20.82225 -19.74473 -19.36244 -18.32720 -18.14469 -17.96508 -17.36113 -16.51441 -16.23421 -16.16870 -15.89309 -15.48329 -14.99958 -14.94633 -14.80918 -14.40626 -14.22523 -14.07116 -13.88145 -13.77394 -13.62921 -13.41008 -13.24034 -13.00256 -12.83928 -12.69905 -12.53297 -12.35467 -12.15411 -11.86742 -11.81810 -11.59332 -11.41962 -11.17433 -11.15177 -10.76286 -10.61221 -10.47813 -10.39804 -10.27151 -9.99028 -9.54283 -9.44204 -8.57695 -8.19511 -7.97507 -6.32670 -3.84036 2.21657 2.64087 3.01116 3.05636 3.13951 3.36517 3.71379 3.72431 3.86118 3.89341 4.04401 4.08877 4.37359 4.50207 4.55403 4.60029 4.68861 4.72908 4.76907 4.88545 5.14405 5.19750 5.23095 5.24442 5.30719 5.38716 5.42880 5.44884 5.51449 5.57564 5.63047 5.74675 5.81092 5.88902 5.93482 5.96879 5.98650 6.10555 6.37428 6.46233 7.06486 7.16595 7.31615 7.57202 7.79667 8.13041 8.58776 8.93775 9.41064 9.81985 10.80436 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.033176 B = 0.001498 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.781536 B =18686.839095 C =19187.452556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.453 3.547 11 O -0.559 6.559 12 C 0.044 3.956 13 N -0.514 5.514 14 C 0.050 3.950 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.095 4.095 18 H 0.089 0.911 19 C 0.124 3.876 20 N -0.725 5.725 21 C 0.514 3.486 22 O -0.540 6.540 23 C -0.143 4.143 24 C -0.157 4.157 25 C 0.262 3.738 26 F -0.205 7.205 27 F -0.206 7.206 28 C 0.064 3.936 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.021 0.979 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.403 0.597 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.112 0.888 47 H 0.033 0.967 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.145 -16.064 -2.147 29.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.238 3.762 11 O -0.441 6.441 12 C -0.088 4.088 13 N -0.238 5.238 14 C -0.078 4.078 15 C -0.151 4.151 16 C -0.152 4.152 17 C -0.114 4.114 18 H 0.107 0.893 19 C 0.001 3.999 20 N -0.378 5.378 21 C 0.300 3.700 22 O -0.417 6.417 23 C -0.183 4.183 24 C -0.195 4.195 25 C 0.208 3.792 26 F -0.187 7.187 27 F -0.188 7.188 28 C -0.065 4.065 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.238 0.762 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.051 0.949 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.898 -16.262 -2.507 29.844 hybrid contribution 0.687 1.549 0.728 1.844 sum 25.585 -14.713 -1.779 29.567 Atomic orbital electron populations 1.69619 1.05639 1.27491 1.49396 1.25030 0.95477 0.97952 0.97652 0.86680 0.79752 0.84086 0.78906 1.19604 1.20201 1.19549 1.19421 0.79222 0.96611 1.48078 0.86272 1.42219 1.07533 1.06158 1.67162 1.19635 0.88069 0.84528 0.83925 1.90524 1.69360 1.30762 1.53435 1.21868 0.95569 0.89732 1.01611 1.61450 1.11598 1.14599 1.36158 1.22287 1.03568 0.93407 0.88499 1.21536 0.94822 0.96637 1.02078 1.21670 0.97232 0.99510 0.96834 1.21406 0.93309 0.97085 0.99638 0.89314 1.21397 0.94563 0.82271 1.01711 1.46006 1.08649 1.10442 1.72655 1.20422 0.82314 0.90832 0.76438 1.90741 1.51417 1.48781 1.50806 1.21578 0.96278 0.95338 1.05105 1.22412 0.96143 0.94128 1.06821 1.21949 0.79082 0.92315 0.85858 1.93002 1.35507 1.97261 1.92888 1.92995 1.94454 1.77899 1.53440 1.21988 0.88462 0.95236 1.00838 0.91620 0.79733 0.93386 0.89208 0.87811 0.96033 0.90773 0.91695 0.92204 0.92209 0.91380 0.91153 0.76248 0.88015 0.87813 0.88564 0.87824 0.87078 0.94902 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.16 27.74 -169.99 -4.71 14.44 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 7 C -0.30 -8.48 10.16 -14.94 -0.15 -8.64 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 9 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 10 C 0.45 9.99 7.46 -10.99 -0.08 9.90 16 11 O -0.56 -14.41 13.92 5.55 0.08 -14.34 16 12 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 13 N -0.51 -7.68 4.39 -236.12 -1.04 -8.72 16 14 C 0.05 0.74 5.11 -3.83 -0.02 0.72 16 15 C -0.11 -1.31 6.09 -26.65 -0.16 -1.47 16 16 C -0.11 -1.01 5.13 -26.61 -0.14 -1.15 16 17 C -0.10 -0.85 2.39 -90.53 -0.22 -1.06 16 18 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 19 C 0.12 1.02 5.07 -4.04 -0.02 1.00 16 20 N -0.73 -4.78 5.31 -60.29 -0.32 -5.10 16 21 C 0.51 4.01 7.83 -10.99 -0.09 3.92 16 22 O -0.54 -6.52 15.98 5.56 0.09 -6.43 16 23 C -0.14 -0.58 5.62 -27.89 -0.16 -0.74 16 24 C -0.16 -0.81 4.73 -26.73 -0.13 -0.94 16 25 C 0.26 1.25 5.29 37.16 0.20 1.45 16 26 F -0.21 -1.54 17.34 2.25 0.04 -1.50 16 27 F -0.21 -1.41 17.02 2.25 0.04 -1.37 16 28 C 0.06 0.70 4.74 -3.83 -0.02 0.69 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 31 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.09 1.27 7.98 -51.93 -0.41 0.85 16 33 H 0.10 1.94 5.80 -51.93 -0.30 1.64 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.41 7.25 -51.93 -0.38 0.03 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.40 1.72 7.67 -40.82 -0.31 1.41 16 42 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.10 0.32 7.94 -51.93 -0.41 -0.09 16 44 H 0.10 0.66 8.10 -51.93 -0.42 0.23 16 45 H 0.10 0.56 8.10 -51.93 -0.42 0.14 16 46 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 47 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -34.92 393.88 -7.79 -42.71 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.51 Total: 7.56 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -1.10 Total: 5.39 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.64 Total: -52.41 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.17 Total: -20.77 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.92 -7.79 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690384865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.233 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds