Wall clock time and date at job start Wed Apr 1 2020 04:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48503 * 109.47140 * 269.99931 * 3 2 1 5 5 H 1.48501 * 109.47097 * 29.99621 * 3 2 1 6 6 H 1.48500 * 109.47158 * 149.99817 * 3 2 1 7 7 C 1.38948 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00196 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00092 * 180.02562 * 7 2 1 10 10 C 1.34778 * 120.00357 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99573 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00201 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47111 * 180.02562 * 12 10 9 14 14 C 1.46849 * 111.00101 * 293.95844 * 13 12 10 15 15 C 1.53035 * 109.52001 * 174.15978 * 14 13 12 16 16 C 1.53119 * 109.28293 * 59.17757 * 15 14 13 17 17 C 1.53120 * 109.15866 * 302.34724 * 16 15 14 18 18 H 1.08991 * 109.50279 * 297.66533 * 17 16 15 19 19 C 1.53005 * 109.50172 * 177.58790 * 17 16 15 20 20 N 1.46505 * 109.46784 * 64.99910 * 19 17 16 21 21 C 1.34777 * 120.00115 * 179.97438 * 20 19 17 22 22 O 1.21282 * 119.99620 * 359.97438 * 21 20 19 23 23 C 1.50697 * 120.00369 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47466 * 180.02562 * 23 21 20 25 25 C 1.53000 * 109.47060 * 180.02562 * 24 23 21 26 26 F 1.39905 * 109.46696 * 175.00228 * 25 24 23 27 27 F 1.39896 * 109.47174 * 294.99637 * 25 24 23 28 28 C 1.46849 * 110.99776 * 169.74523 * 13 12 10 29 29 H 0.96996 * 120.00101 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99924 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47180 * 60.00519 * 12 10 9 32 32 H 1.08994 * 109.47358 * 300.00453 * 12 10 9 33 33 H 1.08991 * 109.46064 * 54.14554 * 14 13 12 34 34 H 1.08991 * 109.45259 * 294.16654 * 14 13 12 35 35 H 1.08999 * 109.50742 * 299.24004 * 15 14 13 36 36 H 1.09002 * 109.50151 * 179.12127 * 15 14 13 37 37 H 1.08993 * 109.52811 * 182.43754 * 16 15 14 38 38 H 1.09005 * 109.57135 * 62.27698 * 16 15 14 39 39 H 1.09002 * 109.47193 * 305.00468 * 19 17 16 40 40 H 1.08992 * 109.47333 * 184.99466 * 19 17 16 41 41 H 0.97003 * 120.00244 * 359.97438 * 20 19 17 42 42 H 1.09002 * 109.47120 * 59.99760 * 23 21 20 43 43 H 1.08998 * 109.46862 * 300.00562 * 23 21 20 44 44 H 1.09002 * 109.47153 * 59.99773 * 24 23 21 45 45 H 1.09001 * 109.46832 * 299.99964 * 24 23 21 46 46 H 1.08990 * 109.47170 * 54.99895 * 25 24 23 47 47 H 1.08998 * 109.45964 * 65.83024 * 28 13 12 48 48 H 1.08994 * 109.46408 * 305.85920 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0021 11 8 3.4473 -3.4209 0.0021 12 6 5.5607 -2.3705 0.0021 13 7 6.0504 -3.7555 0.0027 14 6 5.7010 -4.4367 1.2559 15 6 6.0963 -5.9122 1.1632 16 6 7.6021 -6.0171 0.9062 17 6 7.9466 -5.2586 -0.3786 18 1 7.4337 -5.7202 -1.2223 19 6 9.4581 -5.3075 -0.6109 20 7 9.8699 -6.6919 -0.8562 21 6 11.1662 -6.9783 -1.0885 22 8 11.9918 -6.0899 -1.0948 23 6 11.5898 -8.4023 -1.3414 24 6 13.1012 -8.4513 -1.5736 25 6 13.5311 -9.8969 -1.8310 26 9 14.8916 -9.9281 -2.1555 27 9 13.3084 -10.6615 -0.6807 28 6 7.4977 -3.8020 -0.2413 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0014 31 1 5.9241 -1.8559 0.8917 32 1 5.9241 -1.8574 -0.8882 33 1 4.6271 -4.3583 1.4245 34 1 6.2338 -3.9693 2.0839 35 1 5.5537 -6.3836 0.3439 36 1 5.8511 -6.4141 2.0992 37 1 7.8808 -7.0650 0.7964 38 1 8.1468 -5.5811 1.7437 39 1 9.9737 -4.9259 0.2703 40 1 9.7129 -4.6942 -1.4751 41 1 9.2096 -7.4025 -0.8515 42 1 11.0739 -8.7838 -2.2225 43 1 11.3352 -9.0159 -0.4773 44 1 13.6168 -8.0700 -0.6922 45 1 13.3561 -7.8375 -2.4375 46 1 12.9509 -10.3068 -2.6576 47 1 8.0219 -3.3376 0.5939 48 1 7.7287 -3.2627 -1.1599 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690384865.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:04 Heat of formation + Delta-G solvation = -212.985576 kcal Electronic energy + Delta-G solvation = -29837.908574 eV Core-core repulsion = 25175.596517 eV Total energy + Delta-G solvation = -4662.312057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.86035 -47.89343 -41.05310 -40.57242 -39.37031 -36.51476 -35.85398 -34.75419 -34.06359 -33.67759 -32.28726 -29.24172 -28.47127 -26.46056 -26.26809 -23.96825 -23.37815 -22.60064 -21.40389 -21.22481 -20.58878 -20.15374 -18.61282 -18.43815 -17.87224 -17.73229 -17.02682 -16.87197 -16.72624 -16.65368 -16.40257 -16.28735 -15.55869 -15.53297 -15.10163 -14.99415 -14.85551 -14.72604 -14.53284 -14.38129 -14.31034 -14.19558 -13.77528 -13.66586 -13.47567 -13.27161 -13.08773 -13.04389 -12.81991 -12.65339 -12.40544 -12.20107 -12.03709 -11.98574 -11.79038 -11.61363 -11.57573 -11.35316 -11.24653 -10.94793 -10.30986 -10.21360 -10.05843 -9.17846 -8.40580 -6.00933 1.30188 1.35539 1.44124 1.65839 1.97425 2.11036 2.23155 2.64982 3.01203 3.15123 3.23966 3.42266 3.53981 3.68677 3.74340 3.82256 3.92195 3.98267 4.14449 4.24826 4.28368 4.34945 4.38455 4.42388 4.46253 4.52112 4.57184 4.60390 4.67292 4.75291 4.80920 4.90390 4.96127 5.05512 5.05783 5.10746 5.20948 5.32121 5.43767 5.53624 5.54967 5.92187 6.06610 6.26033 6.57222 6.61193 6.89886 7.27201 7.41468 7.98931 8.77067 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.033176 B = 0.001498 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.781536 B =18686.839095 C =19187.452556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.963 3.037 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.233 1.233 7 C -0.326 4.326 8 H 0.056 0.944 9 N -0.594 5.594 10 C 0.452 3.548 11 O -0.603 6.603 12 C 0.054 3.946 13 N -0.533 5.533 14 C 0.050 3.950 15 C -0.108 4.108 16 C -0.107 4.107 17 C -0.084 4.084 18 H 0.086 0.914 19 C 0.134 3.866 20 N -0.716 5.716 21 C 0.510 3.490 22 O -0.589 6.589 23 C -0.134 4.134 24 C -0.154 4.154 25 C 0.259 3.741 26 F -0.224 7.224 27 F -0.219 7.219 28 C 0.062 3.938 29 H 0.278 0.722 30 H 0.389 0.611 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.055 0.945 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.417 0.583 42 H 0.137 0.863 43 H 0.120 0.880 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.154 0.846 47 H 0.044 0.956 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.205 -15.807 -2.600 32.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.213 4.213 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.156 1.156 7 C -0.456 4.456 8 H 0.074 0.926 9 N -0.236 5.236 10 C 0.240 3.760 11 O -0.487 6.487 12 C -0.077 4.077 13 N -0.258 5.258 14 C -0.078 4.078 15 C -0.146 4.146 16 C -0.144 4.144 17 C -0.103 4.103 18 H 0.104 0.896 19 C 0.009 3.991 20 N -0.368 5.368 21 C 0.298 3.702 22 O -0.470 6.470 23 C -0.174 4.174 24 C -0.193 4.193 25 C 0.206 3.794 26 F -0.205 7.205 27 F -0.200 7.200 28 C -0.066 4.066 29 H 0.088 0.912 30 H 0.224 0.776 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.254 0.746 42 H 0.154 0.846 43 H 0.138 0.862 44 H 0.091 0.909 45 H 0.118 0.882 46 H 0.171 0.829 47 H 0.062 0.938 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 27.969 -16.047 -2.955 32.381 hybrid contribution -0.337 1.333 0.877 1.631 sum 27.632 -14.714 -2.078 31.374 Atomic orbital electron populations 1.69802 1.08106 1.29167 1.50509 1.26078 0.96428 1.02606 0.96170 0.85384 0.79442 0.76893 0.79916 1.18164 1.20119 1.15602 1.18995 0.81485 0.94892 1.50185 0.92613 1.42053 1.05807 1.07595 1.68105 1.20885 0.90805 0.83311 0.81040 1.90514 1.71241 1.32486 1.54463 1.21809 0.90353 0.91405 1.04180 1.61412 1.14330 1.13826 1.36246 1.22181 1.00692 0.95812 0.89106 1.21488 0.96877 0.94244 1.02014 1.21623 0.94722 1.01228 0.96835 1.21276 0.93663 0.95784 0.99598 0.89584 1.21182 0.93590 0.83159 1.01167 1.45924 1.08804 1.10244 1.71877 1.21054 0.81970 0.91866 0.75288 1.90726 1.52689 1.50510 1.53036 1.21603 0.95468 0.92953 1.07337 1.22351 0.96947 0.94409 1.05601 1.22347 0.78480 0.92011 0.86545 1.92965 1.37243 1.97311 1.93000 1.92969 1.94433 1.78155 1.54465 1.22109 0.85774 0.96981 1.01753 0.91209 0.77611 0.90860 0.86177 0.92678 0.95015 0.92334 0.90816 0.89592 0.91800 0.92061 0.91763 0.74611 0.84553 0.86211 0.90938 0.88229 0.82867 0.93814 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.24 13.96 21.66 0.30 -55.94 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.96 38.66 27.74 68.60 1.90 40.57 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.23 -7.86 6.52 99.48 0.65 -7.22 16 7 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 8 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 9 N -0.59 -27.80 5.09 -306.99 -1.56 -29.36 16 10 C 0.45 20.14 7.46 87.66 0.65 20.80 16 11 O -0.60 -32.73 13.92 -3.07 -0.04 -32.78 16 12 C 0.05 1.62 5.45 85.56 0.47 2.09 16 13 N -0.53 -15.16 4.39 -900.96 -3.96 -19.11 16 14 C 0.05 1.46 5.11 86.32 0.44 1.90 16 15 C -0.11 -2.40 6.09 30.65 0.19 -2.21 16 16 C -0.11 -1.57 5.13 30.67 0.16 -1.42 16 17 C -0.08 -1.27 2.39 -10.74 -0.03 -1.29 16 18 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 19 C 0.13 1.84 5.07 86.38 0.44 2.28 16 20 N -0.72 -7.35 5.31 -463.05 -2.46 -9.81 16 21 C 0.51 6.83 7.83 87.66 0.69 7.52 16 22 O -0.59 -13.67 15.98 -3.04 -0.05 -13.72 16 23 C -0.13 -0.69 5.62 29.85 0.17 -0.52 16 24 C -0.15 -1.36 4.73 30.59 0.14 -1.22 16 25 C 0.26 1.92 5.29 71.98 0.38 2.30 16 26 F -0.22 -3.12 17.34 44.97 0.78 -2.34 16 27 F -0.22 -2.58 17.02 44.97 0.77 -1.81 16 28 C 0.06 1.19 4.74 86.33 0.41 1.60 16 29 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 31 H 0.07 1.89 8.12 -2.38 -0.02 1.88 16 32 H 0.12 2.95 7.98 -2.39 -0.02 2.93 16 33 H 0.05 2.16 5.80 -2.39 -0.01 2.15 16 34 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 0.86 7.25 -2.39 -0.02 0.84 16 38 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.42 2.00 7.67 -92.71 -0.71 1.29 16 42 H 0.14 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.12 0.30 7.94 -2.39 -0.02 0.28 16 44 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 45 H 0.10 0.96 8.10 -2.39 -0.02 0.94 16 46 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.09 1.51 8.01 -2.39 -0.02 1.49 16 Total: -1.00 -84.32 393.88 0.79 -83.53 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.32 Total: 27.44 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.43 Total: 13.33 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -7.67 Total: -114.22 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.09 Total: -46.50 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 1.54 Total: -4.15 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.90 Total: 40.57 kcal Total: -84.32 0.79 -83.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690384865.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.454 kcal (2) G-P(sol) polarization free energy of solvation -84.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds