Wall clock time and date at job start Wed Apr 1 2020 04:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42105 * 110.54486 * 2 1 4 4 O 1.42099 * 110.54209 * 223.24856 * 2 1 3 5 5 N 1.65597 * 104.44741 * 111.62413 * 2 1 3 6 6 C 1.46500 * 120.00194 * 65.00078 * 5 2 1 7 7 C 1.53002 * 109.47166 * 164.99944 * 6 5 2 8 8 C 1.50699 * 109.46775 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00183 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99728 * 179.97438 * 8 7 6 11 11 C 1.45322 * 120.37822 * 359.94955 * 10 8 7 12 12 C 1.53446 * 108.42480 * 136.67193 * 11 10 8 13 13 C 1.52872 * 109.39571 * 282.30218 * 12 11 10 14 14 C 1.53953 * 109.72991 * 72.88239 * 13 12 11 15 15 C 1.52444 * 110.72772 * 44.35930 * 14 13 12 16 16 C 1.53800 * 109.41245 * 246.26720 * 15 14 13 17 17 H 1.08997 * 109.52423 * 317.93540 * 16 15 14 18 18 N 1.46501 * 109.52252 * 197.74043 * 16 15 14 19 19 C 1.36943 * 119.99662 * 155.00117 * 18 16 15 20 20 H 1.07993 * 119.99907 * 0.02562 * 19 18 16 21 21 C 1.38809 * 119.99821 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00056 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00004 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47253 * 60.00068 * 23 21 19 25 25 H 1.48501 * 109.46942 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46993 * 299.99839 * 23 21 19 27 27 C 1.46960 * 120.36562 * 180.02562 * 10 8 7 28 28 H 1.08997 * 109.47221 * 308.38114 * 1 2 3 29 29 H 1.09006 * 109.47173 * 68.37463 * 1 2 3 30 30 H 1.08999 * 109.47406 * 188.37403 * 1 2 3 31 31 H 0.97002 * 119.99819 * 244.99474 * 5 2 1 32 32 H 1.09000 * 109.47158 * 44.99936 * 6 5 2 33 33 H 1.09003 * 109.47139 * 284.99738 * 6 5 2 34 34 H 1.09000 * 109.47089 * 59.99950 * 7 6 5 35 35 H 1.09002 * 109.47247 * 299.99488 * 7 6 5 36 36 H 1.08997 * 109.65577 * 16.94766 * 11 10 8 37 37 H 1.09000 * 109.68512 * 256.41611 * 11 10 8 38 38 H 1.09002 * 109.48579 * 162.31970 * 12 11 10 39 39 H 1.09002 * 109.48481 * 42.28241 * 12 11 10 40 40 H 1.09002 * 109.43120 * 192.96139 * 13 12 11 41 41 H 1.09001 * 109.43167 * 312.80305 * 13 12 11 42 42 H 1.09002 * 109.23027 * 164.68333 * 14 13 12 43 43 H 1.09002 * 109.22487 * 284.08043 * 14 13 12 44 44 H 1.09003 * 109.47972 * 6.24973 * 15 14 13 45 45 H 1.09001 * 109.48459 * 126.28690 * 15 14 13 46 46 H 0.96996 * 120.00382 * 335.00820 * 18 16 15 47 47 H 0.97000 * 119.99938 * 180.02562 * 22 21 19 48 48 H 1.08991 * 109.53741 * 171.71571 * 27 10 8 49 49 H 1.09004 * 109.59429 * 51.52535 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2271 -0.5910 1.4907 6 6 1.8906 -1.9706 1.8508 7 6 2.6874 -2.3830 3.0902 8 6 2.3408 -3.8020 3.4609 9 8 1.5361 -4.4224 2.7987 10 7 2.9257 -4.3818 4.5277 11 6 3.8926 -3.6467 5.3256 12 6 3.5979 -3.9096 6.8083 13 6 2.3997 -3.0666 7.2450 14 6 1.1073 -3.6513 6.6467 15 6 1.0842 -5.1687 6.7911 16 6 1.1560 -5.8159 5.3977 17 1 0.5107 -5.2706 4.7091 18 7 0.7161 -7.2107 5.4825 19 6 0.2066 -7.8363 4.3760 20 1 0.1295 -7.3016 3.4409 21 6 -0.2108 -9.1577 4.4564 22 7 -0.1173 -9.8092 5.5962 23 14 -0.9051 -10.0114 2.9469 24 1 0.1177 -10.0232 1.8704 25 1 -1.2742 -11.4074 3.2936 26 1 -2.1105 -9.2825 2.4766 27 6 2.5941 -5.7653 4.8962 28 1 -0.3633 0.6380 0.8056 29 1 -0.3634 0.3788 -0.9554 30 1 -0.3634 -1.0167 0.1497 31 1 2.6920 -0.0236 2.1255 32 1 2.1392 -2.6334 1.0219 33 1 0.8241 -2.0405 2.0647 34 1 2.4388 -1.7202 3.9191 35 1 3.7539 -2.3132 2.8764 36 1 3.8047 -2.5804 5.1174 37 1 4.9003 -3.9860 5.0858 38 1 4.4691 -3.6401 7.4055 39 1 3.3711 -4.9660 6.9522 40 1 2.3302 -3.0714 8.3328 41 1 2.5301 -2.0425 6.8954 42 1 0.2476 -3.2282 7.1665 43 1 1.0513 -3.3910 5.5897 44 1 1.9392 -5.4903 7.3858 45 1 0.1619 -5.4729 7.2860 46 1 0.7856 -7.6910 6.3223 47 1 -0.4086 -10.7327 5.6523 48 1 3.2669 -6.1039 5.6840 49 1 2.6996 -6.4110 4.0243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692322054.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:22 Heat of formation + Delta-G solvation = -119.748641 kcal Electronic energy + Delta-G solvation = -30158.810394 eV Core-core repulsion = 26054.381780 eV Total energy + Delta-G solvation = -4104.428614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51980 -38.90307 -38.15021 -37.02897 -36.67722 -36.51270 -35.04545 -33.89387 -31.49912 -31.23700 -30.25323 -28.67259 -27.34514 -25.82428 -24.57162 -23.52574 -22.21608 -20.93504 -20.56090 -19.60658 -19.08000 -18.60095 -18.03714 -17.43427 -17.29880 -17.10789 -16.83785 -16.43874 -16.05277 -15.66137 -15.49178 -15.34298 -15.14065 -14.81081 -14.23891 -14.13311 -14.05372 -13.96490 -13.85952 -13.49886 -13.41681 -13.20075 -13.10960 -13.05005 -12.99012 -12.78692 -12.68825 -12.58634 -12.36913 -12.24819 -12.01596 -11.95291 -11.92090 -11.70239 -11.39467 -11.35154 -11.23510 -10.99268 -10.60165 -10.40771 -9.55278 -8.90417 -7.95717 -5.23093 -0.65241 1.42881 1.45501 1.52292 1.71031 1.76162 2.20659 2.55892 2.89223 3.29940 3.37262 3.58517 3.72969 3.91653 4.01050 4.05729 4.06886 4.14890 4.17109 4.20935 4.24190 4.33153 4.50018 4.52083 4.57381 4.60326 4.68632 4.80190 4.87845 4.90949 4.92757 4.97110 5.00303 5.10895 5.11390 5.21620 5.32624 5.37992 5.48663 5.50563 5.54470 5.62509 5.78965 6.18313 6.28472 6.62824 7.33864 7.34584 8.09158 8.33572 9.27014 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.003132 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.925807 B = 8936.975894 C =10985.841500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.630 3.370 3 O -0.992 6.992 4 O -1.006 7.006 5 N -1.109 6.109 6 C 0.127 3.873 7 C -0.136 4.136 8 C 0.499 3.501 9 O -0.585 6.585 10 N -0.598 5.598 11 C 0.099 3.901 12 C -0.151 4.151 13 C -0.106 4.106 14 C -0.112 4.112 15 C -0.121 4.121 16 C 0.166 3.834 17 H 0.032 0.968 18 N -0.732 5.732 19 C -0.232 4.232 20 H 0.060 0.940 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.964 3.036 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.282 1.282 27 C 0.115 3.885 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.429 0.571 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.088 0.912 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.964 25.940 0.455 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.812 4.812 2 S 2.726 3.274 3 O -0.983 6.983 4 O -0.996 6.996 5 N -0.870 5.870 6 C 0.000 4.000 7 C -0.177 4.177 8 C 0.288 3.712 9 O -0.465 6.465 10 N -0.331 5.331 11 C -0.023 4.023 12 C -0.188 4.188 13 C -0.143 4.143 14 C -0.150 4.150 15 C -0.159 4.159 16 C 0.057 3.943 17 H 0.051 0.949 18 N -0.372 5.372 19 C -0.364 4.364 20 H 0.078 0.922 21 C -0.263 4.263 22 N -0.617 5.617 23 Si 0.794 3.206 24 H -0.211 1.211 25 H -0.214 1.214 26 H -0.208 1.208 27 C -0.010 4.010 28 H 0.172 0.828 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.266 0.734 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.106 0.894 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 8.016 25.740 -0.865 26.973 hybrid contribution -1.023 -1.481 -0.063 1.801 sum 6.993 24.258 -0.928 25.263 Atomic orbital electron populations 1.30378 1.24258 1.13097 1.13502 1.03971 0.78703 0.72170 0.72582 1.93573 1.79704 1.38862 1.86157 1.93577 1.79064 1.62886 1.64035 1.55223 1.74913 1.20643 1.36250 1.20960 1.00036 0.81269 0.97779 1.21864 1.03939 0.91994 0.99929 1.21216 0.80390 0.89869 0.79727 1.90778 1.36083 1.66545 1.53057 1.47933 1.42921 1.13654 1.28563 1.21988 0.91532 0.98196 0.90554 1.22319 0.99596 1.01415 0.95469 1.21715 0.92535 0.99483 1.00610 1.21621 0.99133 0.93288 1.00973 1.21995 1.01360 0.96736 0.95814 1.20827 0.93176 0.84553 0.95719 0.94944 1.42535 1.74581 1.09770 1.10340 1.19427 1.31903 0.94329 0.90749 0.92232 1.25416 1.03574 0.97696 0.99609 1.69779 1.55351 1.10884 1.25690 0.85349 0.78373 0.77451 0.79444 1.21052 1.21440 1.20814 1.22007 0.98154 0.81968 0.98890 0.82850 0.83840 0.84624 0.73434 0.91763 0.90385 0.84459 0.85822 0.86608 0.90645 0.88352 0.91850 0.91387 0.89457 0.92376 0.92940 0.90463 0.94146 0.79346 0.93973 0.89401 0.95469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.29 10.89 113.37 1.23 -4.06 16 2 S 2.63 38.99 6.10 -56.49 -0.34 38.65 16 3 O -0.99 -20.18 18.08 -127.65 -2.31 -22.48 16 4 O -1.01 -25.18 17.50 -127.65 -2.23 -27.42 16 5 N -1.11 -12.58 5.88 -187.48 -1.10 -13.68 16 6 C 0.13 2.11 5.42 86.38 0.47 2.58 16 7 C -0.14 -1.95 4.23 29.85 0.13 -1.83 16 8 C 0.50 13.46 6.15 87.66 0.54 14.00 16 9 O -0.58 -22.86 14.73 -3.03 -0.04 -22.90 16 10 N -0.60 -14.93 1.68 -823.89 -1.38 -16.32 16 11 C 0.10 1.38 5.88 86.75 0.51 1.89 16 12 C -0.15 -2.14 5.45 30.70 0.17 -1.97 16 13 C -0.11 -1.49 5.75 30.87 0.18 -1.31 16 14 C -0.11 -2.54 5.41 30.73 0.17 -2.37 16 15 C -0.12 -3.79 4.97 30.68 0.15 -3.64 16 16 C 0.17 6.76 2.39 45.06 0.11 6.87 16 17 H 0.03 1.52 6.14 -2.39 -0.01 1.50 16 18 N -0.73 -38.23 5.12 -322.62 -1.65 -39.89 16 19 C -0.23 -13.73 9.91 84.03 0.83 -12.90 16 20 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 21 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 22 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 23 Si 0.96 48.85 29.55 68.60 2.03 50.88 16 24 H -0.28 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 27 C 0.12 4.07 4.76 86.09 0.41 4.48 16 28 H 0.15 0.56 8.14 -2.39 -0.02 0.55 16 29 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.43 2.60 8.62 -96.75 -0.83 1.77 16 32 H 0.06 1.45 7.65 -2.39 -0.02 1.43 16 33 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.14 0.92 7.51 -2.39 -0.02 0.91 16 35 H 0.12 1.23 8.09 -2.39 -0.02 1.21 16 36 H 0.12 0.79 5.76 -2.39 -0.01 0.78 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 1.28 3.35 -2.39 -0.01 1.27 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 41 H 0.09 0.77 7.87 -2.39 -0.02 0.75 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.05 1.29 5.38 -2.39 -0.01 1.28 16 44 H 0.08 2.19 5.47 -2.39 -0.01 2.18 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.37 20.48 7.80 -92.71 -0.72 19.76 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.09 2.79 6.07 -2.39 -0.01 2.77 16 49 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 Total: -1.00 -89.62 386.90 -1.98 -91.60 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.57 Total: 23.50 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.36 Total: -2.02 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -3.86 Total: -129.80 kcal Atomic # 8 Polarization: -68.22 SS G_CDS: -4.59 Total: -72.80 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.03 Total: 50.88 kcal Atomic # 16 Polarization: 38.99 SS G_CDS: -0.34 Total: 38.65 kcal Total: -89.62 -1.98 -91.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692322054.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.149 kcal (2) G-P(sol) polarization free energy of solvation -89.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds