Wall clock time and date at job start Wed Apr 1 2020 04:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 119.99794 * 2 1 4 4 H 1.48503 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47244 * 299.99879 * 3 2 1 6 6 H 1.48499 * 109.47154 * 59.99996 * 3 2 1 7 7 C 1.38950 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00085 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00309 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47480 * 180.02562 * 12 10 9 14 14 C 1.48562 * 110.99842 * 290.12664 * 13 12 10 15 15 C 1.54379 * 104.59486 * 200.96032 * 14 13 12 16 16 C 1.54266 * 105.05973 * 23.85004 * 15 14 13 17 17 H 1.09003 * 110.32265 * 241.10234 * 16 15 14 18 18 N 1.46503 * 110.32252 * 118.89953 * 16 15 14 19 19 C 1.34777 * 120.00259 * 86.45264 * 18 16 15 20 20 O 1.21278 * 119.99801 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00103 * 179.97438 * 19 18 16 22 22 C 1.52997 * 109.46946 * 180.02562 * 21 19 18 23 23 C 1.50707 * 109.46766 * 180.02562 * 22 21 19 24 24 C 1.38595 * 120.79627 * 269.71881 * 23 22 21 25 25 N 1.32337 * 119.10296 * 179.71895 * 24 23 22 26 26 C 1.31797 * 120.81414 * 0.56843 * 25 24 23 27 27 N 1.31792 * 121.75761 * 359.70855 * 26 25 24 28 28 C 1.32333 * 120.81749 * 359.97438 * 27 26 25 29 29 C 1.48562 * 111.00142 * 174.70501 * 13 12 10 30 30 H 0.96999 * 120.00697 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00270 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47237 * 60.00115 * 12 10 9 33 33 H 1.09002 * 109.46702 * 300.00548 * 12 10 9 34 34 H 1.08998 * 110.41528 * 82.17831 * 14 13 12 35 35 H 1.08999 * 110.41058 * 319.73593 * 14 13 12 36 36 H 1.08996 * 110.32596 * 264.95760 * 15 14 13 37 37 H 1.08997 * 110.32827 * 142.74551 * 15 14 13 38 38 H 0.96998 * 119.99480 * 266.45141 * 18 16 15 39 39 H 1.09005 * 109.46906 * 300.00298 * 21 19 18 40 40 H 1.09001 * 109.46943 * 60.00135 * 21 19 18 41 41 H 1.09000 * 109.46957 * 299.99416 * 22 21 19 42 42 H 1.08995 * 109.47342 * 59.99817 * 22 21 19 43 43 H 1.07994 * 120.45136 * 359.97438 * 24 23 22 44 44 H 1.08006 * 119.11935 * 179.68217 * 26 25 24 45 45 H 1.08000 * 120.44822 * 179.97438 * 28 27 26 46 46 H 1.09000 * 110.41111 * 40.26361 * 29 13 12 47 47 H 1.08989 * 110.41482 * 277.81625 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2439 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 2.9072 -6.0734 -1.3050 15 6 3.4270 -7.5259 -1.3611 16 6 2.4979 -8.3208 -0.4205 17 1 3.0711 -8.7587 0.3966 18 7 1.7926 -9.3663 -1.1662 19 6 2.3680 -10.5720 -1.3439 20 8 3.4694 -10.7917 -0.8862 21 6 1.6423 -11.6476 -2.1104 22 6 2.5086 -12.9075 -2.1653 23 6 1.7831 -13.9829 -2.9324 24 6 0.9491 -14.8786 -2.2820 25 7 0.3241 -15.8062 -2.9893 26 6 0.4959 -15.8908 -4.2933 27 7 1.2853 -15.0602 -4.9443 28 6 1.9381 -14.1033 -4.3044 29 6 1.4948 -7.2816 0.1247 30 1 -0.4851 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6169 -4.9202 -0.8919 33 1 0.6176 -4.9212 0.8880 34 1 3.7395 -5.3703 -1.3365 35 1 2.2175 -5.8844 -2.1276 36 1 4.4563 -7.5737 -1.0056 37 1 3.3583 -7.9137 -2.3775 38 1 0.9116 -9.1906 -1.5319 39 1 0.7002 -11.8762 -1.6120 40 1 1.4421 -11.2994 -3.1237 41 1 3.4508 -12.6791 -2.6635 42 1 2.7085 -13.2554 -1.1519 43 1 0.8079 -14.8178 -1.2131 44 1 -0.0238 -16.6618 -4.8429 45 1 2.5838 -13.4262 -4.8438 46 1 0.5841 -7.2818 -0.4741 47 1 1.2638 -7.4883 1.1696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698547389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:25 Heat of formation + Delta-G solvation = -19.292038 kcal Electronic energy + Delta-G solvation = -28620.422355 eV Core-core repulsion = 24417.198666 eV Total energy + Delta-G solvation = -4203.223689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54747 -40.31541 -38.94531 -37.57418 -35.30745 -34.56971 -34.19992 -33.83464 -31.60091 -31.17717 -30.47544 -28.55710 -26.77367 -25.70080 -25.10969 -24.21105 -22.76297 -21.51695 -20.92867 -20.36888 -19.17931 -18.14525 -18.12692 -17.90111 -17.58285 -16.68891 -16.08965 -15.86111 -15.43386 -15.31631 -14.93736 -14.67684 -14.53206 -14.27006 -14.16711 -14.09352 -13.80003 -13.61290 -13.53349 -13.25797 -12.85113 -12.71420 -12.28639 -12.00514 -11.82637 -11.68650 -11.52171 -11.36068 -11.33290 -11.27330 -11.24958 -11.02173 -10.69969 -10.35714 -10.25024 -10.23752 -9.84341 -9.72130 -9.52821 -9.30626 -8.57071 -8.09092 -7.97177 -6.43767 -3.84491 0.33827 0.55121 2.32428 2.79092 3.14902 3.25708 3.26294 3.33003 3.64978 3.71073 3.87631 3.99209 4.06056 4.11938 4.25228 4.27776 4.39462 4.45285 4.65675 4.71435 4.73000 4.94272 5.01155 5.04171 5.13959 5.16984 5.23107 5.26620 5.40816 5.52239 5.54527 5.58605 5.68803 5.73297 5.85505 5.86791 5.92478 6.09535 6.23389 6.28765 6.40473 6.42605 7.03144 7.08920 7.20370 7.53679 7.55260 7.91950 8.04355 8.59639 9.16465 9.52201 10.04011 10.74093 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.031278 B = 0.001416 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.979487 B =19763.963115 C =19983.043112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.576 6.576 12 C 0.035 3.965 13 N -0.481 5.481 14 C 0.037 3.963 15 C -0.131 4.131 16 C 0.141 3.859 17 H 0.100 0.900 18 N -0.724 5.724 19 C 0.513 3.487 20 O -0.536 6.536 21 C -0.137 4.137 22 C -0.057 4.057 23 C -0.186 4.186 24 C 0.151 3.849 25 N -0.519 5.519 26 C 0.286 3.714 27 N -0.519 5.519 28 C 0.151 3.849 29 C 0.025 3.975 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.399 0.601 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.168 0.832 44 H 0.196 0.804 45 H 0.169 0.831 46 H 0.046 0.954 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.100 -27.883 -6.596 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.097 4.097 13 N -0.205 5.205 14 C -0.091 4.091 15 C -0.170 4.170 16 C 0.036 3.964 17 H 0.118 0.882 18 N -0.376 5.376 19 C 0.299 3.701 20 O -0.412 6.412 21 C -0.177 4.177 22 C -0.096 4.096 23 C -0.190 4.190 24 C -0.015 4.015 25 N -0.232 5.232 26 C -0.001 4.001 27 N -0.231 5.231 28 C -0.015 4.015 29 C -0.104 4.104 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.186 0.814 44 H 0.212 0.788 45 H 0.186 0.814 46 H 0.064 0.936 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.732 -28.482 -6.324 29.227 hybrid contribution -1.055 1.587 -0.423 1.952 sum -2.787 -26.895 -6.748 27.868 Atomic orbital electron populations 1.69615 1.05943 1.28047 1.50789 1.25253 0.95626 0.99708 0.97350 0.85805 0.79741 0.81142 0.77695 1.19198 1.20800 1.20740 1.19753 0.93402 0.82177 1.47423 0.87843 1.41857 1.09152 1.04578 1.64603 1.19661 0.88397 0.84450 0.84531 1.90513 1.13629 1.86928 1.54933 1.22065 0.94191 0.91730 1.01673 1.65144 1.23287 0.99976 1.32127 1.23196 0.99736 0.96694 0.89470 1.22743 1.00303 0.94744 0.99247 1.21721 0.93189 0.86999 0.94468 0.88158 1.46206 1.21629 1.12985 1.56769 1.20559 0.86390 0.82928 0.80180 1.90740 1.20096 1.80866 1.49542 1.21675 1.00114 0.94026 1.01884 1.20212 0.97648 0.90546 1.01173 1.21737 1.00694 0.99994 0.96601 1.23239 0.89152 0.88271 1.00874 1.68463 1.23166 1.22323 1.09226 1.25019 0.91948 0.95441 0.87726 1.68460 1.08251 1.04967 1.41471 1.23246 0.93758 0.93377 0.91127 1.23378 0.95151 0.90111 1.01715 0.91942 0.77541 0.93212 0.89178 0.87993 0.94430 0.90228 0.91285 0.76642 0.88643 0.88649 0.89278 0.89276 0.81441 0.78763 0.81432 0.93561 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.27 7.59 -10.99 -0.08 10.19 16 11 O -0.58 -15.33 14.42 5.55 0.08 -15.25 16 12 C 0.04 0.60 5.30 -4.98 -0.03 0.57 16 13 N -0.48 -7.60 5.06 -231.42 -1.17 -8.77 16 14 C 0.04 0.56 5.80 -2.18 -0.01 0.55 16 15 C -0.13 -1.62 6.78 -25.35 -0.17 -1.79 16 16 C 0.14 1.52 3.36 -66.54 -0.22 1.30 16 17 H 0.10 1.23 7.65 -51.93 -0.40 0.84 16 18 N -0.72 -5.65 5.04 -52.46 -0.26 -5.91 16 19 C 0.51 4.31 7.82 -10.99 -0.09 4.22 16 20 O -0.54 -6.70 15.68 5.56 0.09 -6.61 16 21 C -0.14 -0.63 5.68 -27.89 -0.16 -0.79 16 22 C -0.06 -0.29 4.68 -27.88 -0.13 -0.42 16 23 C -0.19 -1.00 5.17 -104.35 -0.54 -1.54 16 24 C 0.15 0.89 11.01 -17.20 -0.19 0.70 16 25 N -0.52 -3.94 10.44 -14.58 -0.15 -4.09 16 26 C 0.29 1.99 12.28 -92.15 -1.13 0.86 16 27 N -0.52 -3.99 10.44 -14.58 -0.15 -4.14 16 28 C 0.15 0.91 11.01 -17.20 -0.19 0.72 16 29 C 0.03 0.28 6.19 -2.18 -0.01 0.27 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 32 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 33 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 34 H 0.10 1.89 6.91 -51.93 -0.36 1.53 16 35 H 0.04 0.54 7.82 -51.93 -0.41 0.14 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 38 H 0.40 2.09 8.34 -40.82 -0.34 1.75 16 39 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16 42 H 0.09 0.49 8.06 -51.93 -0.42 0.07 16 43 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.20 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.17 0.65 8.06 -52.49 -0.42 0.22 16 46 H 0.05 0.43 7.59 -51.93 -0.39 0.04 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 396.64 15.07 5.98 5.98 Total: -1.00 -35.06 396.64 -9.92 -44.98 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.77 Total: 8.66 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -3.20 Total: 6.97 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -1.07 Total: -60.56 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.17 Total: -21.86 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.06 -9.92 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698547389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.686 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds