Wall clock time and date at job start Wed Apr 1 2020 04:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 119.99794 * 2 1 4 4 H 1.48503 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47244 * 299.99879 * 3 2 1 6 6 H 1.48499 * 109.47154 * 59.99996 * 3 2 1 7 7 C 1.38950 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00085 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00309 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47480 * 180.02562 * 12 10 9 14 14 C 1.48562 * 110.99842 * 290.12664 * 13 12 10 15 15 C 1.54379 * 104.59486 * 200.96032 * 14 13 12 16 16 C 1.54266 * 105.05973 * 23.85004 * 15 14 13 17 17 H 1.09003 * 110.32265 * 241.10234 * 16 15 14 18 18 N 1.46503 * 110.32252 * 118.89953 * 16 15 14 19 19 C 1.34777 * 120.00259 * 86.45264 * 18 16 15 20 20 O 1.21278 * 119.99801 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00103 * 179.97438 * 19 18 16 22 22 C 1.52997 * 109.46946 * 180.02562 * 21 19 18 23 23 C 1.50707 * 109.46766 * 180.02562 * 22 21 19 24 24 C 1.38595 * 120.79627 * 269.71881 * 23 22 21 25 25 N 1.32337 * 119.10296 * 179.71895 * 24 23 22 26 26 C 1.31797 * 120.81414 * 0.56843 * 25 24 23 27 27 N 1.31792 * 121.75761 * 359.70855 * 26 25 24 28 28 C 1.32333 * 120.81749 * 359.97438 * 27 26 25 29 29 C 1.48562 * 111.00142 * 174.70501 * 13 12 10 30 30 H 0.96999 * 120.00697 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00270 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47237 * 60.00115 * 12 10 9 33 33 H 1.09002 * 109.46702 * 300.00548 * 12 10 9 34 34 H 1.08998 * 110.41528 * 82.17831 * 14 13 12 35 35 H 1.08999 * 110.41058 * 319.73593 * 14 13 12 36 36 H 1.08996 * 110.32596 * 264.95760 * 15 14 13 37 37 H 1.08997 * 110.32827 * 142.74551 * 15 14 13 38 38 H 0.96998 * 119.99480 * 266.45141 * 18 16 15 39 39 H 1.09005 * 109.46906 * 300.00298 * 21 19 18 40 40 H 1.09001 * 109.46943 * 60.00135 * 21 19 18 41 41 H 1.09000 * 109.46957 * 299.99416 * 22 21 19 42 42 H 1.08995 * 109.47342 * 59.99817 * 22 21 19 43 43 H 1.07994 * 120.45136 * 359.97438 * 24 23 22 44 44 H 1.08006 * 119.11935 * 179.68217 * 26 25 24 45 45 H 1.08000 * 120.44822 * 179.97438 * 28 27 26 46 46 H 1.09000 * 110.41111 * 40.26361 * 29 13 12 47 47 H 1.08989 * 110.41482 * 277.81625 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2439 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 2.9072 -6.0734 -1.3050 15 6 3.4270 -7.5259 -1.3611 16 6 2.4979 -8.3208 -0.4205 17 1 3.0711 -8.7587 0.3966 18 7 1.7926 -9.3663 -1.1662 19 6 2.3680 -10.5720 -1.3439 20 8 3.4694 -10.7917 -0.8862 21 6 1.6423 -11.6476 -2.1104 22 6 2.5086 -12.9075 -2.1653 23 6 1.7831 -13.9829 -2.9324 24 6 0.9491 -14.8786 -2.2820 25 7 0.3241 -15.8062 -2.9893 26 6 0.4959 -15.8908 -4.2933 27 7 1.2853 -15.0602 -4.9443 28 6 1.9381 -14.1033 -4.3044 29 6 1.4948 -7.2816 0.1247 30 1 -0.4851 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6169 -4.9202 -0.8919 33 1 0.6176 -4.9212 0.8880 34 1 3.7395 -5.3703 -1.3365 35 1 2.2175 -5.8844 -2.1276 36 1 4.4563 -7.5737 -1.0056 37 1 3.3583 -7.9137 -2.3775 38 1 0.9116 -9.1906 -1.5319 39 1 0.7002 -11.8762 -1.6120 40 1 1.4421 -11.2994 -3.1237 41 1 3.4508 -12.6791 -2.6635 42 1 2.7085 -13.2554 -1.1519 43 1 0.8079 -14.8178 -1.2131 44 1 -0.0238 -16.6618 -4.8429 45 1 2.5838 -13.4262 -4.8438 46 1 0.5841 -7.2818 -0.4741 47 1 1.2638 -7.4883 1.1696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698547389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:24 Heat of formation + Delta-G solvation = -46.018413 kcal Electronic energy + Delta-G solvation = -28621.581297 eV Core-core repulsion = 24417.198666 eV Total energy + Delta-G solvation = -4204.382632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99502 -41.15642 -40.29167 -39.00754 -36.04554 -35.74652 -35.30028 -34.66193 -33.30376 -32.37918 -31.18866 -29.54300 -28.14204 -26.47917 -25.79800 -25.54316 -23.30058 -22.63519 -21.74339 -21.26107 -20.82567 -19.85805 -18.58169 -18.53920 -18.21779 -17.88232 -17.39407 -16.84926 -16.50109 -16.22752 -16.14420 -15.81696 -15.69294 -15.45703 -15.07158 -14.80274 -14.56985 -14.51356 -14.41815 -14.14760 -14.10225 -13.65593 -13.44613 -13.25514 -13.14907 -12.95304 -12.75796 -12.41690 -12.38424 -12.34156 -12.11435 -12.09654 -11.82698 -11.81694 -11.75608 -11.48319 -10.92441 -10.33130 -10.31329 -10.18826 -10.06938 -9.99403 -9.38405 -8.46198 -5.94346 -0.09393 0.11285 1.36545 1.42070 1.55798 1.68877 2.06988 2.10512 2.30447 2.80039 2.91573 3.20850 3.27069 3.31438 3.37431 3.49797 3.65821 3.68333 3.83013 3.86971 3.98816 4.08128 4.24188 4.29451 4.31564 4.36661 4.39045 4.47400 4.54289 4.56116 4.68400 4.71175 4.79765 4.81563 5.02197 5.06408 5.13724 5.15395 5.17168 5.41900 5.45140 5.48364 5.82799 5.92971 5.99334 6.08476 6.59371 6.62179 7.10553 7.14593 7.31272 7.58064 8.14607 8.71404 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.031278 B = 0.001416 C = 0.001401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.979487 B =19763.963115 C =19983.043112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.618 6.618 12 C 0.049 3.951 13 N -0.510 5.510 14 C 0.040 3.960 15 C -0.122 4.122 16 C 0.151 3.849 17 H 0.083 0.917 18 N -0.712 5.712 19 C 0.513 3.487 20 O -0.581 6.581 21 C -0.126 4.126 22 C -0.050 4.050 23 C -0.177 4.177 24 C 0.144 3.856 25 N -0.540 5.540 26 C 0.277 3.723 27 N -0.541 5.541 28 C 0.143 3.857 29 C 0.033 3.967 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.416 0.584 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.189 0.811 44 H 0.214 0.786 45 H 0.186 0.814 46 H 0.077 0.923 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.012 -28.787 -6.989 30.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.504 6.504 12 C -0.082 4.082 13 N -0.235 5.235 14 C -0.088 4.088 15 C -0.161 4.161 16 C 0.045 3.955 17 H 0.101 0.899 18 N -0.365 5.365 19 C 0.301 3.699 20 O -0.461 6.461 21 C -0.166 4.166 22 C -0.089 4.089 23 C -0.181 4.181 24 C -0.021 4.021 25 N -0.254 5.254 26 C -0.011 4.011 27 N -0.255 5.255 28 C -0.022 4.022 29 C -0.095 4.095 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.254 0.746 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.206 0.794 44 H 0.230 0.770 45 H 0.203 0.797 46 H 0.095 0.905 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.704 -29.400 -6.729 30.387 hybrid contribution -0.416 1.816 -0.291 1.885 sum -4.120 -27.585 -7.019 28.760 Atomic orbital electron populations 1.69665 1.06727 1.29165 1.50542 1.25979 0.96516 1.02232 0.96371 0.84906 0.78011 0.77318 0.78318 1.19976 1.19598 1.19639 1.19672 0.92625 0.84088 1.49765 0.90529 1.41916 1.09292 1.04632 1.65390 1.20815 0.88299 0.86021 0.82131 1.90493 1.15878 1.87879 1.56101 1.21920 0.93753 0.88611 1.03955 1.65039 1.24311 1.01620 1.32530 1.23039 0.98631 0.97286 0.89857 1.22640 0.99683 0.93354 1.00472 1.21393 0.92936 0.87373 0.93795 0.89855 1.46039 1.22098 1.12153 1.56167 1.21204 0.85849 0.83381 0.79479 1.90734 1.22266 1.81615 1.51445 1.21665 1.00177 0.92202 1.02515 1.20123 0.97420 0.90669 1.00735 1.21673 1.00342 0.99843 0.96245 1.23641 0.88771 0.87840 1.01852 1.68508 1.24064 1.23184 1.09609 1.25429 0.91958 0.95793 0.87881 1.68500 1.09058 1.05776 1.42132 1.23619 0.93643 0.93296 0.91691 1.23402 0.95733 0.87334 1.03059 0.91340 0.76963 0.90589 0.86844 0.92436 0.93399 0.92008 0.89830 0.74633 0.86325 0.86659 0.89981 0.89717 0.79445 0.76978 0.79695 0.90531 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.95 13.05 21.66 0.28 -48.67 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -29.00 5.29 -306.99 -1.62 -30.62 16 10 C 0.44 20.58 7.59 87.66 0.66 21.24 16 11 O -0.62 -34.12 14.42 -3.06 -0.04 -34.16 16 12 C 0.05 1.58 5.30 85.56 0.45 2.04 16 13 N -0.51 -15.52 5.06 -886.07 -4.49 -20.00 16 14 C 0.04 1.21 5.80 86.45 0.50 1.71 16 15 C -0.12 -2.94 6.78 31.49 0.21 -2.72 16 16 C 0.15 2.98 3.36 45.89 0.15 3.13 16 17 H 0.08 1.99 7.65 -2.39 -0.02 1.97 16 18 N -0.71 -8.96 5.04 -438.28 -2.21 -11.17 16 19 C 0.51 7.39 7.82 87.66 0.69 8.07 16 20 O -0.58 -13.94 15.68 -3.02 -0.05 -13.99 16 21 C -0.13 -0.76 5.68 29.85 0.17 -0.59 16 22 C -0.05 -0.40 4.68 29.85 0.14 -0.26 16 23 C -0.18 -1.55 5.17 -19.69 -0.10 -1.65 16 24 C 0.14 1.45 11.01 84.70 0.93 2.38 16 25 N -0.54 -7.52 10.44 -200.04 -2.09 -9.61 16 26 C 0.28 3.57 12.28 180.88 2.22 5.79 16 27 N -0.54 -7.73 10.44 -200.04 -2.09 -9.81 16 28 C 0.14 1.50 11.01 84.70 0.93 2.43 16 29 C 0.03 0.64 6.19 86.45 0.54 1.17 16 30 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 32 H 0.08 2.08 7.88 -2.39 -0.02 2.06 16 33 H 0.11 3.16 8.13 -2.39 -0.02 3.14 16 34 H 0.06 2.25 6.91 -2.39 -0.02 2.23 16 35 H 0.05 1.32 7.82 -2.39 -0.02 1.30 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.74 7.95 -2.39 -0.02 1.72 16 38 H 0.42 2.58 8.34 -92.71 -0.77 1.81 16 39 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16 40 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.08 0.81 8.06 -2.39 -0.02 0.79 16 42 H 0.08 0.79 8.06 -2.39 -0.02 0.77 16 43 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 46 H 0.08 1.07 7.59 -2.39 -0.02 1.06 16 47 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -78.90 396.64 -1.98 -80.88 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.49 Total: 27.69 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 8.78 Total: 24.68 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -12.21 Total: -129.88 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -0.09 Total: -48.15 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -78.90 -1.98 -80.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698547389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.866 kcal (2) G-P(sol) polarization free energy of solvation -78.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds