Wall clock time and date at job start Wed Apr 1 2020 04:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42094 * 110.54530 * 2 1 4 4 O 1.42097 * 110.54111 * 223.24513 * 2 1 3 5 5 N 1.65605 * 104.44741 * 111.62576 * 2 1 3 6 6 C 1.46497 * 120.00224 * 64.99710 * 5 2 1 7 7 C 1.53007 * 109.46778 * 165.00118 * 6 5 2 8 8 C 1.50701 * 109.46484 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00384 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99745 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00039 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46778 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46932 * 180.02562 * 12 11 10 14 14 C 1.53352 * 109.41800 * 295.12870 * 13 12 11 15 15 C 1.53190 * 109.15070 * 178.67720 * 14 13 12 16 16 N 1.46925 * 108.89356 * 54.57285 * 15 14 13 17 17 C 1.36935 * 120.62758 * 126.30089 * 16 15 14 18 18 H 1.08001 * 120.00088 * 332.62829 * 17 16 15 19 19 C 1.38817 * 119.99782 * 152.62208 * 17 16 15 20 20 N 1.31618 * 119.99923 * 159.36242 * 19 17 16 21 21 Si 1.86801 * 120.00195 * 339.36341 * 19 17 16 22 22 H 1.48501 * 109.47054 * 92.89675 * 21 19 17 23 23 H 1.48497 * 109.47324 * 212.90179 * 21 19 17 24 24 H 1.48501 * 109.46722 * 332.89954 * 21 19 17 25 25 C 1.46926 * 118.73822 * 306.31916 * 16 15 14 26 26 C 1.53037 * 109.46053 * 174.99715 * 13 12 11 27 27 H 1.09001 * 109.46565 * 308.38010 * 1 2 3 28 28 H 1.09001 * 109.47063 * 68.37760 * 1 2 3 29 29 H 1.08992 * 109.47108 * 188.37844 * 1 2 3 30 30 H 0.97003 * 119.99345 * 244.99705 * 5 2 1 31 31 H 1.08996 * 109.47074 * 44.99908 * 6 5 2 32 32 H 1.08998 * 109.46767 * 285.00001 * 6 5 2 33 33 H 1.08996 * 109.46988 * 59.99880 * 7 6 5 34 34 H 1.08996 * 109.46898 * 299.99717 * 7 6 5 35 35 H 0.97010 * 119.99676 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47152 * 60.00595 * 11 10 8 37 37 H 1.08996 * 109.47175 * 299.99598 * 11 10 8 38 38 H 1.08996 * 109.46988 * 59.99880 * 12 11 10 39 39 H 1.08996 * 109.46898 * 299.99717 * 12 11 10 40 40 H 1.09008 * 109.45887 * 55.02514 * 13 12 11 41 41 H 1.09004 * 109.68561 * 58.70472 * 14 13 12 42 42 H 1.09004 * 109.47287 * 298.51133 * 14 13 12 43 43 H 1.09004 * 109.58215 * 294.71811 * 15 14 13 44 44 H 1.08997 * 109.58828 * 174.43980 * 15 14 13 45 45 H 0.96999 * 119.99917 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58248 * 173.39705 * 25 16 15 47 47 H 1.08994 * 109.58922 * 293.68210 * 25 16 15 48 48 H 1.09003 * 109.49698 * 61.43697 * 26 13 12 49 49 H 1.08994 * 109.52761 * 301.35110 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 7 2.2272 -0.5910 1.4908 6 6 1.8907 -1.9706 1.8509 7 6 2.6875 -2.3830 3.0903 8 6 2.3418 -3.8024 3.4603 9 8 1.5377 -4.4231 2.7977 10 7 2.9269 -4.3823 4.5270 11 6 2.5904 -5.7619 4.8870 12 6 3.3873 -6.1743 6.1264 13 6 3.0364 -7.6154 6.5020 14 6 1.5627 -7.6889 6.9200 15 6 1.2094 -9.1395 7.2629 16 7 2.1514 -9.6315 8.2775 17 6 1.6945 -10.1795 9.4463 18 1 0.7361 -9.8804 9.8445 19 6 2.4631 -11.1193 10.1192 20 7 2.2536 -11.3465 11.3986 21 14 3.7947 -12.0616 9.2091 22 1 5.0912 -11.3525 9.3558 23 1 3.9109 -13.4284 9.7780 24 1 3.4405 -12.1531 7.7698 25 6 3.5929 -9.5241 8.0142 26 6 3.9230 -8.0698 7.6637 27 1 -0.3632 0.6381 0.8056 28 1 -0.3633 0.3787 -0.9554 29 1 -0.3633 -1.0166 0.1497 30 1 2.6921 -0.0236 2.1256 31 1 2.1392 -2.6334 1.0220 32 1 0.8242 -2.0404 2.0647 33 1 2.4389 -1.7202 3.9191 34 1 3.7540 -2.3131 2.8764 35 1 3.5708 -3.8861 5.0563 36 1 2.8386 -6.4246 4.0580 37 1 1.5240 -5.8317 5.1014 38 1 3.1388 -5.5115 6.9552 39 1 4.4538 -6.1044 5.9124 40 1 3.2023 -8.2653 5.6428 41 1 0.9312 -7.3444 6.1011 42 1 1.4012 -7.0586 7.7946 43 1 1.2833 -9.7552 6.3665 44 1 0.1934 -9.1853 7.6548 45 1 2.7909 -12.0030 11.8689 46 1 4.1497 -9.8212 8.9029 47 1 3.8615 -10.1730 7.1808 48 1 3.7393 -7.4358 8.5312 49 1 4.9709 -7.9945 7.3733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698722045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:41 Heat of formation + Delta-G solvation = -100.292446 kcal Electronic energy + Delta-G solvation = -27887.504952 eV Core-core repulsion = 23783.920022 eV Total energy + Delta-G solvation = -4103.584930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.12144 -38.33269 -37.61408 -36.51075 -36.28101 -35.54753 -33.69342 -31.68634 -30.92832 -30.38469 -30.01280 -28.81601 -25.46088 -23.96179 -23.25811 -22.11837 -21.19113 -20.66622 -19.97013 -19.33468 -18.26192 -17.41490 -16.91403 -16.84466 -16.55385 -16.27362 -16.01360 -15.28108 -15.18371 -15.12995 -14.26926 -14.13608 -14.03822 -13.80231 -13.75858 -13.65575 -13.37171 -13.15993 -12.83999 -12.82196 -12.60861 -12.49256 -12.36400 -12.25860 -12.12591 -11.88539 -11.71723 -11.55362 -11.48865 -11.18727 -10.79966 -10.58843 -10.42854 -10.24509 -10.09760 -10.05923 -9.79624 -9.62858 -9.40926 -9.28511 -8.60745 -6.95744 -5.94681 -3.29684 -0.26589 2.11602 2.30159 2.90584 3.28099 3.31306 3.48380 3.51611 3.67656 4.04455 4.23629 4.37726 4.47692 4.50608 4.53319 4.76439 4.86573 4.89664 4.95002 4.98283 5.11712 5.13276 5.26152 5.34500 5.38584 5.46954 5.53629 5.62475 5.81947 5.83311 5.96748 5.97505 6.10027 6.19384 6.23338 6.36832 6.39194 6.44436 6.55961 6.66168 6.67996 6.72374 6.99510 7.16684 7.88655 7.97799 8.33403 8.95759 9.73238 10.11939 11.21474 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.001448 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.898582 B =19328.537372 C =19489.831857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.617 3.383 3 O -0.961 6.961 4 O -0.954 6.954 5 N -1.123 6.123 6 C 0.127 3.873 7 C -0.149 4.149 8 C 0.513 3.487 9 O -0.540 6.540 10 N -0.728 5.728 11 C 0.116 3.884 12 C -0.125 4.125 13 C -0.076 4.076 14 C -0.132 4.132 15 C 0.147 3.853 16 N -0.606 5.606 17 C -0.258 4.258 18 H 0.085 0.915 19 C 0.022 3.978 20 N -0.910 5.910 21 Si 0.884 3.116 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.125 3.875 26 C -0.127 4.127 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.418 0.582 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.021 0.979 44 H 0.061 0.939 45 H 0.262 0.738 46 H 0.071 0.929 47 H 0.023 0.977 48 H 0.064 0.936 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 25.048 -19.572 31.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.709 3.291 3 O -0.951 6.951 4 O -0.944 6.944 5 N -0.882 5.882 6 C 0.001 3.999 7 C -0.190 4.190 8 C 0.298 3.702 9 O -0.417 6.417 10 N -0.380 5.380 11 C -0.007 4.007 12 C -0.163 4.163 13 C -0.095 4.095 14 C -0.171 4.171 15 C 0.021 3.979 16 N -0.330 5.330 17 C -0.387 4.387 18 H 0.102 0.898 19 C -0.177 4.177 20 N -0.553 5.553 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.196 1.196 25 C -0.001 4.001 26 C -0.166 4.166 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.252 0.748 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.041 0.959 48 H 0.083 0.917 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.163 24.608 -20.710 32.164 hybrid contribution 0.681 -0.270 0.606 0.950 sum 0.843 24.339 -20.104 31.579 Atomic orbital electron populations 1.30521 1.28198 1.11937 1.11681 1.04632 0.77593 0.73734 0.73134 1.93627 1.78067 1.37720 1.85681 1.93636 1.76987 1.61738 1.62075 1.55608 1.74530 1.21328 1.36766 1.21056 0.99470 0.81191 0.98180 1.21795 1.03139 0.94573 0.99507 1.20397 0.81000 0.88393 0.80394 1.90747 1.34119 1.65243 1.51552 1.46089 1.45591 1.15823 1.30460 1.21557 1.00572 0.81144 0.97467 1.21887 0.99607 0.98337 0.96480 1.21029 0.96386 0.93816 0.98313 1.22179 0.94814 0.99796 1.00268 1.20919 0.93967 0.91454 0.91545 1.44351 0.99666 1.70927 1.18074 1.18933 1.06046 1.17348 0.96340 0.89789 1.25282 0.98517 0.98074 0.95805 1.69839 1.42058 1.35952 1.07441 0.86938 0.81675 0.79314 0.80642 1.21708 1.23211 1.19626 1.21323 0.86280 0.93420 0.99034 1.22037 0.97413 0.99470 0.97701 0.85185 0.85250 0.85126 0.74785 0.89064 0.90740 0.87973 0.87818 0.76516 0.91411 0.90809 0.91313 0.91657 0.91531 0.92581 0.91960 0.96105 0.92027 0.92824 0.91077 0.95882 0.91724 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.67 10.89 101.05 1.10 -0.57 16 2 S 2.62 14.16 6.10 -107.50 -0.66 13.51 16 3 O -0.96 -8.36 18.08 -57.54 -1.04 -9.40 16 4 O -0.95 -9.25 17.50 -57.54 -1.01 -10.26 16 5 N -1.12 -4.32 5.89 -10.61 -0.06 -4.38 16 6 C 0.13 0.66 5.42 -4.04 -0.02 0.64 16 7 C -0.15 -0.65 5.84 -27.88 -0.16 -0.82 16 8 C 0.51 4.37 7.83 -10.98 -0.09 4.29 16 9 O -0.54 -6.87 15.98 5.56 0.09 -6.79 16 10 N -0.73 -5.51 5.56 -60.29 -0.33 -5.84 16 11 C 0.12 1.14 5.43 -4.04 -0.02 1.12 16 12 C -0.13 -1.26 4.80 -26.73 -0.13 -1.39 16 13 C -0.08 -1.05 2.15 -90.42 -0.19 -1.25 16 14 C -0.13 -2.00 5.16 -26.45 -0.14 -2.14 16 15 C 0.15 2.84 6.50 -3.71 -0.02 2.81 16 16 N -0.61 -14.21 2.77 -172.32 -0.48 -14.69 16 17 C -0.26 -7.19 10.03 -15.06 -0.15 -7.34 16 18 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 19 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 20 N -0.91 -27.83 13.97 55.49 0.78 -27.05 16 21 Si 0.88 22.37 24.34 -169.99 -4.14 18.24 16 22 H -0.29 -7.03 6.62 56.52 0.37 -6.66 16 23 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 24 H -0.27 -6.77 6.64 56.52 0.38 -6.40 16 25 C 0.12 2.66 4.21 -3.71 -0.02 2.65 16 26 C -0.13 -2.08 5.36 -26.61 -0.14 -2.23 16 27 H 0.13 0.14 8.14 -51.92 -0.42 -0.28 16 28 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 29 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.42 0.84 8.62 -34.47 -0.30 0.55 16 31 H 0.09 0.64 7.65 -51.93 -0.40 0.24 16 32 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.40 1.88 8.47 -40.82 -0.35 1.53 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.83 6.53 -51.93 -0.34 0.49 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 41 H 0.06 0.74 6.52 -51.93 -0.34 0.40 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.07 1.68 4.50 -51.93 -0.23 1.44 16 47 H 0.02 0.49 7.07 -51.93 -0.37 0.13 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -39.02 397.01 -9.20 -48.23 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -8.26 Total: -3.87 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.08 Total: -3.68 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.10 Total: -51.96 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -1.96 Total: -26.44 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.24 kcal Atomic # 16 Polarization: 14.16 SS G_CDS: -0.66 Total: 13.51 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -39.02 -9.20 -48.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698722045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.064 kcal (2) G-P(sol) polarization free energy of solvation -39.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds