Wall clock time and date at job start Wed Apr 1 2020 04:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42094 * 110.54530 * 2 1 4 4 O 1.42097 * 110.54111 * 223.24513 * 2 1 3 5 5 N 1.65605 * 104.44741 * 111.62576 * 2 1 3 6 6 C 1.46497 * 120.00224 * 64.99710 * 5 2 1 7 7 C 1.53007 * 109.46778 * 165.00118 * 6 5 2 8 8 C 1.50701 * 109.46484 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00384 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99745 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00039 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46778 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46932 * 180.02562 * 12 11 10 14 14 C 1.53352 * 109.41800 * 295.12870 * 13 12 11 15 15 C 1.53190 * 109.15070 * 178.67720 * 14 13 12 16 16 N 1.46925 * 108.89356 * 54.57285 * 15 14 13 17 17 C 1.36935 * 120.62758 * 126.30089 * 16 15 14 18 18 H 1.08001 * 120.00088 * 332.62829 * 17 16 15 19 19 C 1.38817 * 119.99782 * 152.62208 * 17 16 15 20 20 N 1.31618 * 119.99923 * 159.36242 * 19 17 16 21 21 Si 1.86801 * 120.00195 * 339.36341 * 19 17 16 22 22 H 1.48501 * 109.47054 * 92.89675 * 21 19 17 23 23 H 1.48497 * 109.47324 * 212.90179 * 21 19 17 24 24 H 1.48501 * 109.46722 * 332.89954 * 21 19 17 25 25 C 1.46926 * 118.73822 * 306.31916 * 16 15 14 26 26 C 1.53037 * 109.46053 * 174.99715 * 13 12 11 27 27 H 1.09001 * 109.46565 * 308.38010 * 1 2 3 28 28 H 1.09001 * 109.47063 * 68.37760 * 1 2 3 29 29 H 1.08992 * 109.47108 * 188.37844 * 1 2 3 30 30 H 0.97003 * 119.99345 * 244.99705 * 5 2 1 31 31 H 1.08996 * 109.47074 * 44.99908 * 6 5 2 32 32 H 1.08998 * 109.46767 * 285.00001 * 6 5 2 33 33 H 1.08996 * 109.46988 * 59.99880 * 7 6 5 34 34 H 1.08996 * 109.46898 * 299.99717 * 7 6 5 35 35 H 0.97010 * 119.99676 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47152 * 60.00595 * 11 10 8 37 37 H 1.08996 * 109.47175 * 299.99598 * 11 10 8 38 38 H 1.08996 * 109.46988 * 59.99880 * 12 11 10 39 39 H 1.08996 * 109.46898 * 299.99717 * 12 11 10 40 40 H 1.09008 * 109.45887 * 55.02514 * 13 12 11 41 41 H 1.09004 * 109.68561 * 58.70472 * 14 13 12 42 42 H 1.09004 * 109.47287 * 298.51133 * 14 13 12 43 43 H 1.09004 * 109.58215 * 294.71811 * 15 14 13 44 44 H 1.08997 * 109.58828 * 174.43980 * 15 14 13 45 45 H 0.96999 * 119.99917 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.58248 * 173.39705 * 25 16 15 47 47 H 1.08994 * 109.58922 * 293.68210 * 25 16 15 48 48 H 1.09003 * 109.49698 * 61.43697 * 26 13 12 49 49 H 1.08994 * 109.52761 * 301.35110 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 7 2.2272 -0.5910 1.4908 6 6 1.8907 -1.9706 1.8509 7 6 2.6875 -2.3830 3.0903 8 6 2.3418 -3.8024 3.4603 9 8 1.5377 -4.4231 2.7977 10 7 2.9269 -4.3823 4.5270 11 6 2.5904 -5.7619 4.8870 12 6 3.3873 -6.1743 6.1264 13 6 3.0364 -7.6154 6.5020 14 6 1.5627 -7.6889 6.9200 15 6 1.2094 -9.1395 7.2629 16 7 2.1514 -9.6315 8.2775 17 6 1.6945 -10.1795 9.4463 18 1 0.7361 -9.8804 9.8445 19 6 2.4631 -11.1193 10.1192 20 7 2.2536 -11.3465 11.3986 21 14 3.7947 -12.0616 9.2091 22 1 5.0912 -11.3525 9.3558 23 1 3.9109 -13.4284 9.7780 24 1 3.4405 -12.1531 7.7698 25 6 3.5929 -9.5241 8.0142 26 6 3.9230 -8.0698 7.6637 27 1 -0.3632 0.6381 0.8056 28 1 -0.3633 0.3787 -0.9554 29 1 -0.3633 -1.0166 0.1497 30 1 2.6921 -0.0236 2.1256 31 1 2.1392 -2.6334 1.0220 32 1 0.8242 -2.0404 2.0647 33 1 2.4389 -1.7202 3.9191 34 1 3.7540 -2.3131 2.8764 35 1 3.5708 -3.8861 5.0563 36 1 2.8386 -6.4246 4.0580 37 1 1.5240 -5.8317 5.1014 38 1 3.1388 -5.5115 6.9552 39 1 4.4538 -6.1044 5.9124 40 1 3.2023 -8.2653 5.6428 41 1 0.9312 -7.3444 6.1011 42 1 1.4012 -7.0586 7.7946 43 1 1.2833 -9.7552 6.3665 44 1 0.1934 -9.1853 7.6548 45 1 2.7909 -12.0030 11.8689 46 1 4.1497 -9.8212 8.9029 47 1 3.8615 -10.1730 7.1808 48 1 3.7393 -7.4358 8.5312 49 1 4.9709 -7.9945 7.3733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698722045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:40 Heat of formation + Delta-G solvation = -133.552430 kcal Electronic energy + Delta-G solvation = -27888.947213 eV Core-core repulsion = 23783.920022 eV Total energy + Delta-G solvation = -4105.027191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.79953 -39.68403 -38.17390 -37.06856 -36.93277 -36.40882 -35.04436 -33.41686 -31.92603 -31.54741 -30.25704 -29.93017 -26.82565 -25.05793 -24.43166 -23.38279 -22.33620 -21.43096 -20.71817 -20.38891 -18.77367 -18.73624 -17.92513 -17.34885 -17.20919 -17.06282 -16.85444 -16.71442 -15.98549 -15.80395 -15.62268 -15.29306 -15.14275 -14.87539 -14.75077 -14.38865 -14.26096 -14.06446 -13.96529 -13.89221 -13.38980 -13.31230 -13.20349 -13.14537 -13.07605 -12.88009 -12.67490 -12.52711 -12.44064 -12.25564 -12.14645 -11.99587 -11.95016 -11.63879 -11.54952 -11.18639 -11.03972 -10.88716 -10.61740 -10.41188 -9.99848 -8.90411 -8.16503 -5.47052 -0.65772 1.28729 1.40962 1.50096 1.69079 1.72280 2.33894 2.41527 2.89942 3.07335 3.29783 3.38548 3.66155 3.81571 3.92185 3.97106 4.06239 4.11007 4.17043 4.22084 4.29967 4.39992 4.43341 4.54121 4.62005 4.63525 4.64278 4.71870 4.77765 4.91416 4.94651 4.97699 5.02119 5.03488 5.09816 5.12330 5.27694 5.30265 5.32658 5.38971 5.52410 5.65697 5.88340 6.12981 6.16044 6.61760 6.94235 7.31616 7.64850 8.05428 9.03628 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.001448 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.898582 B =19328.537372 C =19489.831857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.627 3.373 3 O -0.997 6.997 4 O -1.005 7.005 5 N -1.112 6.112 6 C 0.124 3.876 7 C -0.140 4.140 8 C 0.508 3.492 9 O -0.588 6.588 10 N -0.718 5.718 11 C 0.120 3.880 12 C -0.109 4.109 13 C -0.073 4.073 14 C -0.120 4.120 15 C 0.138 3.862 16 N -0.621 5.621 17 C -0.248 4.248 18 H 0.049 0.951 19 C -0.037 4.037 20 N -0.958 5.958 21 Si 0.949 3.051 22 H -0.272 1.272 23 H -0.312 1.312 24 H -0.265 1.265 25 C 0.116 3.884 26 C -0.118 4.118 27 H 0.152 0.848 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.428 0.572 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.418 0.582 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.030 0.970 44 H 0.048 0.952 45 H 0.261 0.739 46 H 0.045 0.955 47 H 0.029 0.971 48 H 0.055 0.945 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 27.224 -21.046 34.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.723 3.277 3 O -0.988 6.988 4 O -0.995 6.995 5 N -0.874 5.874 6 C -0.003 4.003 7 C -0.181 4.181 8 C 0.296 3.704 9 O -0.468 6.468 10 N -0.370 5.370 11 C -0.004 4.004 12 C -0.147 4.147 13 C -0.092 4.092 14 C -0.159 4.159 15 C 0.014 3.986 16 N -0.346 5.346 17 C -0.378 4.378 18 H 0.067 0.933 19 C -0.231 4.231 20 N -0.605 5.605 21 Si 0.778 3.222 22 H -0.199 1.199 23 H -0.241 1.241 24 H -0.189 1.189 25 C -0.009 4.009 26 C -0.157 4.157 27 H 0.170 0.830 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.264 0.736 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.255 0.745 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.047 0.953 48 H 0.074 0.926 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.290 26.845 -22.203 34.861 hybrid contribution 0.207 -0.912 1.071 1.422 sum 1.497 25.933 -21.132 33.486 Atomic orbital electron populations 1.30362 1.23856 1.13347 1.13476 1.04056 0.78889 0.72138 0.72663 1.93575 1.79845 1.39179 1.86182 1.93574 1.79131 1.62811 1.63983 1.55271 1.74954 1.20973 1.36172 1.21037 1.00278 0.81117 0.97867 1.21811 1.04003 0.92229 1.00066 1.21081 0.80021 0.89621 0.79725 1.90731 1.36335 1.66666 1.53088 1.45958 1.45635 1.15019 1.30418 1.21335 0.99712 0.82343 0.96963 1.21694 1.00813 0.95559 0.96636 1.20981 0.94458 0.96536 0.97238 1.22050 0.96734 0.96344 1.00769 1.21130 0.92706 0.94192 0.90588 1.44500 1.01459 1.71015 1.17640 1.18886 1.04594 1.16776 0.97536 0.93325 1.25909 1.01624 0.99278 0.96327 1.69970 1.44239 1.37211 1.09049 0.85874 0.79790 0.77228 0.79284 1.19858 1.24111 1.18935 1.21428 0.84466 0.96970 0.98019 1.21929 0.99777 0.95580 0.98453 0.82963 0.83926 0.84076 0.73556 0.91376 0.89885 0.84715 0.86003 0.74514 0.92544 0.92207 0.90501 0.89545 0.91184 0.90125 0.92862 0.95241 0.93318 0.93014 0.93630 0.95301 0.92639 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.64 10.89 113.37 1.23 -0.41 16 2 S 2.63 26.38 6.10 -56.49 -0.34 26.04 16 3 O -1.00 -16.89 18.08 -127.65 -2.31 -19.19 16 4 O -1.00 -19.83 17.50 -127.65 -2.23 -22.07 16 5 N -1.11 -6.56 5.89 -187.49 -1.10 -7.67 16 6 C 0.12 1.06 5.42 86.38 0.47 1.53 16 7 C -0.14 -0.79 5.84 29.85 0.17 -0.62 16 8 C 0.51 7.44 7.83 87.66 0.69 8.12 16 9 O -0.59 -14.32 15.98 -3.02 -0.05 -14.36 16 10 N -0.72 -8.50 5.56 -463.06 -2.57 -11.07 16 11 C 0.12 2.03 5.43 86.38 0.47 2.50 16 12 C -0.11 -1.76 4.80 30.60 0.15 -1.61 16 13 C -0.07 -1.78 2.15 -10.66 -0.02 -1.81 16 14 C -0.12 -3.43 5.16 30.78 0.16 -3.27 16 15 C 0.14 5.26 6.50 86.36 0.56 5.82 16 16 N -0.62 -29.03 2.77 -699.10 -1.94 -30.97 16 17 C -0.25 -14.21 10.03 84.03 0.84 -13.37 16 18 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 19 C -0.04 -2.17 5.23 84.86 0.44 -1.73 16 20 N -0.96 -60.59 13.97 21.65 0.30 -60.29 16 21 Si 0.95 46.88 24.34 68.60 1.67 48.55 16 22 H -0.27 -12.54 6.62 99.48 0.66 -11.88 16 23 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 24 H -0.26 -12.61 6.64 99.48 0.66 -11.95 16 25 C 0.12 4.75 4.21 86.36 0.36 5.11 16 26 C -0.12 -3.55 5.36 30.67 0.16 -3.38 16 27 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.43 0.73 8.62 -96.74 -0.83 -0.10 16 31 H 0.07 0.92 7.65 -2.39 -0.02 0.91 16 32 H 0.08 0.57 8.10 -2.39 -0.02 0.55 16 33 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.42 2.13 8.47 -92.70 -0.79 1.35 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.19 6.53 -2.39 -0.02 1.18 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.08 1.93 6.52 -2.38 -0.02 1.92 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 45 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 46 H 0.05 2.09 4.50 -2.39 -0.01 2.08 16 47 H 0.03 1.16 7.07 -2.39 -0.02 1.14 16 48 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -88.86 397.01 -3.64 -92.50 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -0.76 Total: 1.64 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.69 Total: -3.10 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -5.31 Total: -110.00 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -4.59 Total: -55.62 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.67 Total: 48.55 kcal Atomic # 16 Polarization: 26.38 SS G_CDS: -0.34 Total: 26.04 kcal Total: -88.86 -3.64 -92.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698722045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.051 kcal (2) G-P(sol) polarization free energy of solvation -88.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds