Wall clock time and date at job start Wed Apr 1 2020 04:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48497 * 109.47512 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47046 * 300.00355 * 3 2 1 6 6 H 1.48504 * 109.46968 * 59.99764 * 3 2 1 7 7 C 1.38947 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00678 * 180.02562 * 7 2 1 9 9 N 1.37107 * 119.99638 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99852 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00306 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99981 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.46973 * 180.02562 * 12 10 9 14 14 C 1.46908 * 110.99658 * 179.97438 * 13 12 10 15 15 C 1.50710 * 109.46749 * 180.02562 * 14 13 12 16 16 C 1.30992 * 119.99640 * 127.00981 * 15 14 13 17 17 C 1.50699 * 120.00237 * 7.55614 * 16 15 14 18 18 N 1.46505 * 109.47477 * 127.15992 * 17 16 15 19 19 C 1.34772 * 120.00440 * 180.02562 * 18 17 16 20 20 O 1.21605 * 119.99992 * 359.97438 * 19 18 17 21 21 C 1.47429 * 120.00291 * 180.27183 * 19 18 17 22 22 C 1.41203 * 126.43346 * 359.41167 * 21 19 18 23 23 N 1.30296 * 108.02644 * 179.77996 * 22 21 19 24 24 N 1.40514 * 109.01361 * 0.37762 * 23 22 21 25 25 C 1.34015 * 108.17016 * 359.86957 * 24 23 22 26 26 C 1.51396 * 110.33936 * 179.72103 * 25 24 23 27 27 C 1.54571 * 104.14549 * 343.54631 * 26 25 24 28 28 C 1.47255 * 140.80971 * 179.97438 * 24 23 22 29 29 H 0.97001 * 119.99398 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00241 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46932 * 60.00242 * 12 10 9 32 32 H 1.08999 * 109.46832 * 300.00541 * 12 10 9 33 33 H 1.00903 * 111.00614 * 303.95374 * 13 12 10 34 34 H 1.08996 * 109.47227 * 60.00841 * 14 13 12 35 35 H 1.08991 * 109.47424 * 299.99831 * 14 13 12 36 36 H 1.08003 * 119.99990 * 307.00516 * 15 14 13 37 37 H 1.08001 * 120.00316 * 187.55646 * 16 15 14 38 38 H 1.09000 * 109.47200 * 7.15940 * 17 16 15 39 39 H 1.09010 * 109.47316 * 247.15663 * 17 16 15 40 40 H 0.97003 * 119.99546 * 359.97438 * 18 17 16 41 41 H 1.07997 * 125.99011 * 359.97170 * 22 21 19 42 42 H 1.08999 * 110.49442 * 102.21579 * 26 25 24 43 43 H 1.08990 * 110.49501 * 224.88237 * 26 25 24 44 44 H 1.08994 * 110.99447 * 266.93213 * 27 26 25 45 45 H 1.08998 * 111.01975 * 143.12236 * 27 26 25 46 46 H 1.09004 * 110.22795 * 316.05912 * 28 24 23 47 47 H 1.08998 * 110.23205 * 77.92647 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 1.4978 -7.2708 0.0008 15 6 2.5074 -8.3898 0.0022 16 6 2.4383 -9.3330 0.9085 17 6 1.2569 -9.3962 1.8419 18 7 0.6708 -10.7382 1.7978 19 6 -0.4046 -11.0292 2.5563 20 8 -0.8881 -10.1779 3.2777 21 6 -0.9907 -12.3813 2.5165 22 6 -0.5452 -13.4656 1.7292 23 7 -1.3159 -14.4867 1.9762 24 7 -2.2884 -14.1091 2.9175 25 6 -2.0830 -12.8242 3.2382 26 6 -3.1121 -12.3630 4.2483 27 6 -4.2226 -13.4354 4.1728 28 6 -3.4388 -14.6598 3.6535 29 1 -0.4849 0.8401 -0.0004 30 1 0.3533 -2.3907 -0.0002 31 1 0.6174 -4.9205 -0.8903 32 1 0.6166 -4.9208 0.8896 33 1 2.8338 -5.9125 -0.7802 34 1 0.8734 -7.3456 -0.8895 35 1 0.8726 -7.3450 0.8904 36 1 3.2878 -8.4140 -0.7441 37 1 3.2281 -10.0655 0.9869 38 1 0.5109 -8.6636 1.5337 39 1 1.5844 -9.1759 2.8580 40 1 1.0563 -11.4171 1.2221 41 1 0.2900 -13.4519 1.0447 42 1 -2.6785 -12.3321 5.2479 43 1 -3.5064 -11.3852 3.9720 44 1 -5.0010 -13.1427 3.4683 45 1 -4.6445 -13.6314 5.1586 46 1 -4.0645 -15.2526 2.9862 47 1 -3.0949 -15.2706 4.4882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699264762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:39 Heat of formation + Delta-G solvation = 42.574262 kcal Electronic energy + Delta-G solvation = -28162.695612 eV Core-core repulsion = 23962.154647 eV Total energy + Delta-G solvation = -4200.540965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.28408 -39.47125 -38.30363 -36.95238 -36.81955 -34.94437 -33.85526 -32.80773 -31.46789 -31.16842 -29.95921 -28.48033 -27.50833 -25.84548 -24.67296 -23.11130 -22.94563 -22.37961 -20.88061 -20.18375 -19.42963 -18.81419 -17.88828 -17.60043 -17.00113 -16.56754 -15.92808 -15.69398 -15.36288 -15.16777 -15.01775 -14.80463 -14.51842 -14.37431 -14.21854 -14.14417 -13.76970 -13.62457 -13.60464 -13.47696 -12.89168 -12.67005 -12.60655 -12.36322 -12.20522 -11.83464 -11.81570 -11.50309 -11.46327 -11.35923 -11.03166 -10.77238 -10.31716 -10.19600 -10.12401 -9.83765 -9.52273 -9.48739 -9.16867 -8.88974 -8.42333 -8.00235 -7.92262 -6.38653 -3.79392 1.13606 1.65421 1.77220 1.89655 3.18924 3.21624 3.25874 3.29294 3.36843 3.46192 3.88659 3.94486 4.04801 4.12298 4.16542 4.41259 4.47832 4.61708 4.68786 4.79423 4.83786 4.87774 4.91456 5.09961 5.15950 5.23274 5.26616 5.29626 5.30290 5.39792 5.41776 5.63428 5.69504 5.80567 5.84919 5.97441 6.02449 6.16931 6.24206 6.30022 6.42094 6.65592 7.14911 7.21913 7.39582 7.58508 7.68006 8.09867 8.13738 8.64638 9.21114 9.57782 10.09218 10.79211 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018755 B = 0.001452 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.538070 B =19274.933160 C =20453.282430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.663 5.663 14 C 0.069 3.931 15 C -0.112 4.112 16 C -0.182 4.182 17 C 0.143 3.857 18 N -0.723 5.723 19 C 0.593 3.407 20 O -0.546 6.546 21 C -0.282 4.282 22 C 0.085 3.915 23 N -0.277 5.277 24 N -0.383 5.383 25 C 0.140 3.860 26 C -0.072 4.072 27 C -0.134 4.134 28 C 0.125 3.875 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.349 0.651 34 H 0.037 0.963 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.398 0.602 41 H 0.196 0.804 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 -32.119 5.438 33.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.295 5.295 14 C -0.059 4.059 15 C -0.131 4.131 16 C -0.201 4.201 17 C 0.021 3.979 18 N -0.374 5.374 19 C 0.380 3.620 20 O -0.424 6.424 21 C -0.296 4.296 22 C -0.103 4.103 23 N -0.094 5.094 24 N -0.163 5.163 25 C 0.006 3.994 26 C -0.110 4.110 27 C -0.172 4.172 28 C 0.005 3.995 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.169 0.831 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.232 0.768 41 H 0.212 0.788 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.125 0.875 46 H 0.115 0.885 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.957 -32.788 6.342 34.576 hybrid contribution -0.007 1.221 -1.155 1.681 sum -8.964 -31.567 5.187 33.223 Atomic orbital electron populations 1.69625 1.05941 1.28018 1.50735 1.25264 0.95635 0.99720 0.97370 0.85796 0.79714 0.81134 0.77667 1.19212 1.20806 1.20754 1.19765 0.93415 0.82233 1.47425 0.87850 1.41870 1.09220 1.04596 1.64400 1.19797 0.88375 0.84713 0.84416 1.90521 1.13757 1.87074 1.55371 1.21695 0.94357 0.90907 1.01338 1.60095 1.18681 0.99410 1.51358 1.21294 0.94925 0.88357 1.01363 1.22834 0.98948 0.94392 0.96929 1.22671 0.98578 1.01680 0.97219 1.20488 0.93934 0.83717 0.99809 1.45727 1.31420 1.14307 1.45975 1.17213 0.79454 0.85957 0.79340 1.90788 1.61898 1.48919 1.40791 1.19454 1.03683 0.96633 1.09873 1.24086 0.98600 0.89403 0.98219 1.77217 1.01409 1.23181 1.07638 1.50130 1.24291 1.09905 1.31940 1.22532 0.94978 0.86980 0.94871 1.21035 0.91886 1.00656 0.97452 1.22885 0.97657 0.92897 1.03781 1.22506 0.83802 0.97702 0.95535 0.91948 0.77438 0.93807 0.89463 0.83145 0.94506 0.89577 0.86599 0.86423 0.89974 0.90631 0.76816 0.78757 0.87805 0.87440 0.89079 0.87514 0.88511 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 10 C 0.44 10.66 7.82 -10.98 -0.09 10.57 16 11 O -0.58 -16.13 15.78 5.55 0.09 -16.04 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.66 -10.95 6.11 -116.34 -0.71 -11.66 16 14 C 0.07 0.87 5.78 -4.97 -0.03 0.84 16 15 C -0.11 -1.16 9.77 -36.02 -0.35 -1.52 16 16 C -0.18 -1.66 9.63 -36.02 -0.35 -2.01 16 17 C 0.14 1.48 5.76 -5.19 -0.03 1.45 16 18 N -0.72 -6.56 5.54 -62.56 -0.35 -6.90 16 19 C 0.59 6.86 7.81 -12.52 -0.10 6.76 16 20 O -0.55 -8.27 16.90 5.27 0.09 -8.18 16 21 C -0.28 -2.82 6.13 -105.04 -0.64 -3.46 16 22 C 0.08 0.70 11.50 -17.08 -0.20 0.50 16 23 N -0.28 -2.73 12.64 30.82 0.39 -2.34 16 24 N -0.38 -3.21 4.81 -55.13 -0.26 -3.48 16 25 C 0.14 1.27 7.30 -81.31 -0.59 0.68 16 26 C -0.07 -0.41 6.86 -26.72 -0.18 -0.60 16 27 C -0.13 -0.33 7.18 -25.19 -0.18 -0.51 16 28 C 0.12 0.49 7.78 -2.91 -0.02 0.47 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.35 5.82 8.42 -39.29 -0.33 5.49 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 1.09 5.29 -51.93 -0.27 0.82 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.08 0.96 5.30 -51.93 -0.28 0.68 16 39 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.40 2.41 7.42 -40.82 -0.30 2.10 16 41 H 0.20 0.85 7.50 -52.49 -0.39 0.46 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.11 0.01 8.14 -51.93 -0.42 -0.42 16 46 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -37.55 400.49 -8.60 -46.15 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -6.48 Total: 12.99 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -3.03 Total: 5.93 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.27 Total: -63.16 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.18 Total: -24.22 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.55 -8.60 -46.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699264762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.725 kcal (2) G-P(sol) polarization free energy of solvation -37.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds