Wall clock time and date at job start Wed Apr 1 2020 04:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48497 * 109.47512 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47046 * 300.00355 * 3 2 1 6 6 H 1.48504 * 109.46968 * 59.99764 * 3 2 1 7 7 C 1.38947 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00678 * 180.02562 * 7 2 1 9 9 N 1.37107 * 119.99638 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99852 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00306 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99981 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.46973 * 180.02562 * 12 10 9 14 14 C 1.46908 * 110.99658 * 179.97438 * 13 12 10 15 15 C 1.50710 * 109.46749 * 180.02562 * 14 13 12 16 16 C 1.30992 * 119.99640 * 127.00981 * 15 14 13 17 17 C 1.50699 * 120.00237 * 7.55614 * 16 15 14 18 18 N 1.46505 * 109.47477 * 127.15992 * 17 16 15 19 19 C 1.34772 * 120.00440 * 180.02562 * 18 17 16 20 20 O 1.21605 * 119.99992 * 359.97438 * 19 18 17 21 21 C 1.47429 * 120.00291 * 180.27183 * 19 18 17 22 22 C 1.41203 * 126.43346 * 359.41167 * 21 19 18 23 23 N 1.30296 * 108.02644 * 179.77996 * 22 21 19 24 24 N 1.40514 * 109.01361 * 0.37762 * 23 22 21 25 25 C 1.34015 * 108.17016 * 359.86957 * 24 23 22 26 26 C 1.51396 * 110.33936 * 179.72103 * 25 24 23 27 27 C 1.54571 * 104.14549 * 343.54631 * 26 25 24 28 28 C 1.47255 * 140.80971 * 179.97438 * 24 23 22 29 29 H 0.97001 * 119.99398 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00241 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46932 * 60.00242 * 12 10 9 32 32 H 1.08999 * 109.46832 * 300.00541 * 12 10 9 33 33 H 1.00903 * 111.00614 * 303.95374 * 13 12 10 34 34 H 1.08996 * 109.47227 * 60.00841 * 14 13 12 35 35 H 1.08991 * 109.47424 * 299.99831 * 14 13 12 36 36 H 1.08003 * 119.99990 * 307.00516 * 15 14 13 37 37 H 1.08001 * 120.00316 * 187.55646 * 16 15 14 38 38 H 1.09000 * 109.47200 * 7.15940 * 17 16 15 39 39 H 1.09010 * 109.47316 * 247.15663 * 17 16 15 40 40 H 0.97003 * 119.99546 * 359.97438 * 18 17 16 41 41 H 1.07997 * 125.99011 * 359.97170 * 22 21 19 42 42 H 1.08999 * 110.49442 * 102.21579 * 26 25 24 43 43 H 1.08990 * 110.49501 * 224.88237 * 26 25 24 44 44 H 1.08994 * 110.99447 * 266.93213 * 27 26 25 45 45 H 1.08998 * 111.01975 * 143.12236 * 27 26 25 46 46 H 1.09004 * 110.22795 * 316.05912 * 28 24 23 47 47 H 1.08998 * 110.23205 * 77.92647 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 1.4978 -7.2708 0.0008 15 6 2.5074 -8.3898 0.0022 16 6 2.4383 -9.3330 0.9085 17 6 1.2569 -9.3962 1.8419 18 7 0.6708 -10.7382 1.7978 19 6 -0.4046 -11.0292 2.5563 20 8 -0.8881 -10.1779 3.2777 21 6 -0.9907 -12.3813 2.5165 22 6 -0.5452 -13.4656 1.7292 23 7 -1.3159 -14.4867 1.9762 24 7 -2.2884 -14.1091 2.9175 25 6 -2.0830 -12.8242 3.2382 26 6 -3.1121 -12.3630 4.2483 27 6 -4.2226 -13.4354 4.1728 28 6 -3.4388 -14.6598 3.6535 29 1 -0.4849 0.8401 -0.0004 30 1 0.3533 -2.3907 -0.0002 31 1 0.6174 -4.9205 -0.8903 32 1 0.6166 -4.9208 0.8896 33 1 2.8338 -5.9125 -0.7802 34 1 0.8734 -7.3456 -0.8895 35 1 0.8726 -7.3450 0.8904 36 1 3.2878 -8.4140 -0.7441 37 1 3.2281 -10.0655 0.9869 38 1 0.5109 -8.6636 1.5337 39 1 1.5844 -9.1759 2.8580 40 1 1.0563 -11.4171 1.2221 41 1 0.2900 -13.4519 1.0447 42 1 -2.6785 -12.3321 5.2479 43 1 -3.5064 -11.3852 3.9720 44 1 -5.0010 -13.1427 3.4683 45 1 -4.6445 -13.6314 5.1586 46 1 -4.0645 -15.2526 2.9862 47 1 -3.0949 -15.2706 4.4882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699264762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:38 Heat of formation + Delta-G solvation = 12.477031 kcal Electronic energy + Delta-G solvation = -28164.000726 eV Core-core repulsion = 23962.154647 eV Total energy + Delta-G solvation = -4201.846079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86862 -40.35905 -40.14296 -38.00463 -37.31283 -36.22356 -35.71141 -33.85155 -33.23703 -32.06216 -30.45746 -29.47687 -28.49154 -27.01312 -26.12597 -24.46372 -23.50863 -22.90854 -21.46584 -21.20119 -20.89918 -20.00764 -19.64106 -18.43235 -17.78331 -17.48515 -17.21578 -16.88425 -16.52903 -16.42415 -16.00520 -15.78573 -15.65475 -15.44146 -15.26159 -15.09614 -14.80974 -14.64931 -14.30754 -14.28996 -14.12400 -13.94177 -13.52323 -13.38098 -13.18523 -13.03209 -12.95041 -12.72141 -12.52394 -12.40393 -12.13324 -12.10603 -12.03049 -11.64561 -11.51461 -11.02683 -10.38651 -10.37944 -10.35201 -10.02998 -10.00359 -9.60952 -9.25407 -8.46730 -5.95814 0.46533 1.04675 1.10853 1.23742 1.37196 1.42410 1.57085 2.04294 2.29805 2.42781 2.46415 3.02263 3.05525 3.20400 3.46645 3.61803 3.64394 3.77195 3.88111 3.97302 4.09983 4.12898 4.26372 4.33654 4.35256 4.46003 4.46950 4.49725 4.52441 4.55597 4.67730 4.75197 4.82613 4.87053 4.97481 5.02580 5.06102 5.36668 5.41161 5.43845 5.60778 5.64744 5.82773 5.90025 6.08757 6.40786 6.51881 6.59604 6.68231 7.12198 7.32085 7.55478 8.10519 8.70959 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018755 B = 0.001452 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.538070 B =19274.933160 C =20453.282430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.063 3.937 13 N -0.678 5.678 14 C 0.071 3.929 15 C -0.126 4.126 16 C -0.161 4.161 17 C 0.143 3.857 18 N -0.708 5.708 19 C 0.591 3.409 20 O -0.591 6.591 21 C -0.310 4.310 22 C 0.093 3.907 23 N -0.308 5.308 24 N -0.385 5.385 25 C 0.127 3.873 26 C -0.076 4.076 27 C -0.118 4.118 28 C 0.113 3.887 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.347 0.653 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.414 0.586 41 H 0.227 0.773 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.138 0.862 46 H 0.109 0.891 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.694 -33.604 5.398 35.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.069 4.069 13 N -0.311 5.311 14 C -0.057 4.057 15 C -0.145 4.145 16 C -0.181 4.181 17 C 0.020 3.980 18 N -0.360 5.360 19 C 0.380 3.620 20 O -0.473 6.473 21 C -0.325 4.325 22 C -0.094 4.094 23 N -0.126 5.126 24 N -0.164 5.164 25 C -0.008 4.008 26 C -0.115 4.115 27 C -0.156 4.156 28 C -0.005 4.005 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.166 0.834 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.251 0.749 41 H 0.243 0.757 42 H 0.128 0.872 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.156 0.844 46 H 0.127 0.873 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.610 -34.334 6.278 36.202 hybrid contribution 0.153 1.589 -1.103 1.941 sum -9.457 -32.745 5.175 34.473 Atomic orbital electron populations 1.69685 1.06884 1.29264 1.50330 1.26069 0.96558 1.02485 0.96200 0.84842 0.78029 0.76947 0.78326 1.19733 1.19483 1.19659 1.19734 0.92761 0.84021 1.49942 0.90235 1.41942 1.09344 1.04735 1.65005 1.20838 0.88255 0.86129 0.82241 1.90485 1.15787 1.87955 1.56651 1.21545 0.94080 0.88229 1.03043 1.60088 1.18963 1.00454 1.51563 1.21322 0.95480 0.87114 1.01764 1.22820 0.99250 0.94210 0.98222 1.22763 0.98138 1.01664 0.95494 1.20395 0.94202 0.84035 0.99391 1.45559 1.30626 1.14254 1.45524 1.17503 0.79516 0.86196 0.78824 1.90754 1.63376 1.50309 1.42835 1.19529 1.04934 0.96350 1.11669 1.24572 0.98827 0.88206 0.97805 1.77131 1.02438 1.24199 1.08844 1.50527 1.24613 1.09870 1.31417 1.23107 0.95133 0.87570 0.95009 1.21178 0.92304 1.01189 0.96828 1.22927 0.96360 0.90689 1.05594 1.22934 0.82975 0.98616 0.96015 0.91285 0.76982 0.91381 0.88179 0.83429 0.93299 0.89935 0.85269 0.83759 0.91376 0.92004 0.74857 0.75660 0.87217 0.88558 0.88582 0.84423 0.87255 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.48 13.05 21.66 0.28 -50.20 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 1.00 43.54 29.55 68.60 2.03 45.56 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.34 -19.42 9.68 84.04 0.81 -18.61 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -30.18 5.29 -306.98 -1.62 -31.80 16 10 C 0.44 21.45 7.82 87.66 0.69 22.14 16 11 O -0.62 -35.27 15.78 -3.07 -0.05 -35.32 16 12 C 0.06 2.27 6.17 85.56 0.53 2.79 16 13 N -0.68 -21.97 6.11 -521.99 -3.19 -25.16 16 14 C 0.07 1.70 5.78 85.56 0.49 2.19 16 15 C -0.13 -2.40 9.77 25.66 0.25 -2.15 16 16 C -0.16 -2.62 9.63 25.65 0.25 -2.37 16 17 C 0.14 2.87 5.76 85.63 0.49 3.36 16 18 N -0.71 -12.28 5.54 -470.09 -2.60 -14.88 16 19 C 0.59 13.81 7.81 86.66 0.68 14.49 16 20 O -0.59 -18.61 16.90 -4.05 -0.07 -18.68 16 21 C -0.31 -6.16 6.13 -20.14 -0.12 -6.28 16 22 C 0.09 1.45 11.50 85.65 0.98 2.44 16 23 N -0.31 -5.81 12.64 -56.42 -0.71 -6.53 16 24 N -0.39 -6.11 4.81 -328.34 -1.58 -7.69 16 25 C 0.13 2.28 7.30 42.44 0.31 2.59 16 26 C -0.08 -0.85 6.86 30.60 0.21 -0.64 16 27 C -0.12 -0.34 7.18 31.60 0.23 -0.12 16 28 C 0.11 0.68 7.78 86.70 0.67 1.36 16 29 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 33 H 0.35 11.43 8.42 -89.69 -0.76 10.68 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 2.05 5.29 -2.39 -0.01 2.03 16 36 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.07 1.59 5.30 -2.39 -0.01 1.58 16 39 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.41 4.26 7.42 -92.71 -0.69 3.57 16 41 H 0.23 1.53 7.50 -2.91 -0.02 1.51 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.14 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -83.50 400.49 -1.71 -85.21 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -1.13 Total: 38.55 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.94 Total: 20.93 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -9.43 Total: -136.26 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -0.12 Total: -54.00 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -83.50 -1.71 -85.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699264762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.686 kcal (2) G-P(sol) polarization free energy of solvation -83.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds