Wall clock time and date at job start Wed Apr 1 2020 04:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65599 * 119.99814 * 2 1 4 4 O 1.42097 * 104.27788 * 308.93172 * 3 2 1 5 5 O 1.42100 * 104.27875 * 181.07357 * 3 2 1 6 6 C 1.81399 * 104.44808 * 65.00555 * 3 2 1 7 7 C 1.52998 * 109.47108 * 180.02562 * 6 3 2 8 8 C 1.50706 * 109.47348 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99503 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72561 * 8 7 6 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46738 * 324.99609 * 11 10 8 13 13 C 1.52993 * 109.47171 * 84.99494 * 11 10 8 14 14 C 1.53002 * 109.47290 * 60.00189 * 13 11 10 15 15 C 1.52997 * 109.46906 * 59.99926 * 14 13 11 16 16 C 1.53006 * 109.47071 * 299.99931 * 15 14 13 17 17 C 1.52994 * 109.46945 * 204.99736 * 11 10 8 18 18 H 1.09002 * 109.47025 * 179.97438 * 17 11 10 19 19 C 1.53002 * 109.47420 * 60.00021 * 17 11 10 20 20 N 1.46500 * 109.47499 * 174.99836 * 19 17 11 21 21 C 1.36934 * 119.99913 * 179.97438 * 20 19 17 22 22 H 1.07991 * 120.00262 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99713 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00121 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00070 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46813 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46719 * 119.99914 * 25 23 21 28 28 H 1.48499 * 109.47348 * 240.00220 * 25 23 21 29 29 H 1.09000 * 109.46696 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46957 * 299.99172 * 1 2 3 31 31 H 1.08994 * 109.46931 * 59.99706 * 1 2 3 32 32 H 0.97002 * 120.00525 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47516 * 59.99948 * 6 3 2 34 34 H 1.09002 * 109.46834 * 299.99504 * 6 3 2 35 35 H 1.09001 * 109.47671 * 59.99908 * 7 6 3 36 36 H 1.08998 * 109.47454 * 299.99906 * 7 6 3 37 37 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.46922 * 180.02562 * 13 11 10 39 39 H 1.09007 * 109.47428 * 300.00223 * 13 11 10 40 40 H 1.08997 * 109.47064 * 179.97438 * 14 13 11 41 41 H 1.09002 * 109.47028 * 299.99801 * 14 13 11 42 42 H 1.09002 * 109.47380 * 60.00090 * 15 14 13 43 43 H 1.09003 * 109.46880 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.46845 * 180.02562 * 16 15 14 45 45 H 1.09002 * 109.47148 * 300.00301 * 16 15 14 46 46 H 1.09002 * 109.46646 * 294.99937 * 19 17 11 47 47 H 1.09003 * 109.47345 * 54.99165 * 19 17 11 48 48 H 0.96998 * 119.99501 * 0.02562 * 20 19 17 49 49 H 0.97002 * 119.99988 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7188 2.1703 -1.0712 5 8 3.6606 1.0493 -0.0258 6 6 1.8765 2.1972 1.5921 7 6 2.5889 3.5457 1.7133 8 6 2.2424 4.1800 3.0357 9 8 1.4984 3.6098 3.8052 10 7 2.7633 5.3786 3.3653 11 6 2.4269 5.9949 4.6511 12 1 1.3949 5.7569 4.9091 13 6 3.3613 5.4548 5.7355 14 6 4.8098 5.7889 5.3733 15 6 4.9724 7.3067 5.2695 16 6 4.0379 7.8467 4.1850 17 6 2.5895 7.5126 4.5472 18 1 2.3388 7.9712 5.5037 19 6 1.6550 8.0527 3.4627 20 7 1.7223 9.5160 3.4445 21 6 0.9666 10.2250 2.5493 22 1 0.3214 9.7055 1.8565 23 6 1.0308 11.6116 2.5316 24 7 1.8183 12.2447 3.3750 25 14 0.0005 12.5788 1.3100 26 1 -0.7935 11.6388 0.4786 27 1 -0.9176 13.4853 2.0453 28 1 0.8931 13.3811 0.4354 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.9501 -0.8400 -0.0004 33 1 2.1959 1.5430 2.4033 34 1 0.7988 2.3496 1.6511 35 1 2.2691 4.1999 0.9021 36 1 3.6667 3.3939 1.6540 37 1 3.3615 5.8328 2.7515 38 1 3.1106 5.9131 6.6922 39 1 3.2454 4.3735 5.8095 40 1 5.4754 5.4045 6.1461 41 1 5.0601 5.3303 4.4167 42 1 4.7221 7.7652 6.2262 43 1 6.0043 7.5447 5.0111 44 1 4.1542 8.9280 4.1107 45 1 4.2883 7.3882 3.2283 46 1 1.9613 7.6627 2.4921 47 1 0.6329 7.7385 3.6743 48 1 2.3027 9.9826 4.0660 49 1 1.8629 13.2136 3.3629 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699513132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:16 Heat of formation + Delta-G solvation = -117.775522 kcal Electronic energy + Delta-G solvation = -29310.893279 eV Core-core repulsion = 25206.550226 eV Total energy + Delta-G solvation = -4104.343053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.40915 -38.35640 -37.45445 -36.31382 -35.40930 -34.68786 -33.72277 -33.44592 -31.94335 -29.95316 -29.47292 -26.41626 -25.76910 -24.98552 -23.02529 -22.24212 -21.11817 -20.50311 -19.70355 -19.00285 -18.43465 -17.60070 -17.16784 -16.77546 -16.32803 -16.04085 -15.66279 -15.29346 -14.94916 -14.68753 -14.42914 -14.30846 -14.01616 -13.74626 -13.52477 -13.28022 -13.24637 -13.09099 -12.88673 -12.75195 -12.44631 -12.34054 -12.16178 -12.03495 -12.00170 -11.86122 -11.68881 -11.44401 -11.23666 -10.91925 -10.90427 -10.75922 -10.39197 -10.20308 -10.07929 -10.00034 -9.89161 -9.88013 -9.64764 -8.98842 -8.86926 -6.93542 -5.78589 -3.06948 -0.13991 2.31607 2.53550 3.07567 3.42470 3.44558 3.48679 3.50540 3.85210 4.02040 4.43200 4.52010 4.55433 4.62083 4.80872 4.85683 4.88492 4.97811 5.02783 5.10131 5.21870 5.27152 5.30142 5.31263 5.43546 5.54849 5.57413 5.60387 5.64821 5.71480 5.79216 6.01363 6.10184 6.12403 6.20849 6.24033 6.34491 6.45120 6.46832 6.52840 6.65185 6.77415 6.83986 7.47316 7.69439 8.14945 8.40513 9.52023 10.09360 10.44040 11.44304 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.002667 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.886038 B =10495.210474 C =12429.590641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.124 6.124 3 S 2.614 3.386 4 O -0.951 6.951 5 O -0.957 6.957 6 C -0.610 4.610 7 C -0.138 4.138 8 C 0.523 3.477 9 O -0.542 6.542 10 N -0.713 5.713 11 C 0.154 3.846 12 H 0.088 0.912 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.111 4.111 17 C -0.102 4.102 18 H 0.086 0.914 19 C 0.160 3.840 20 N -0.731 5.731 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.418 0.582 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.403 0.597 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.018 0.982 47 H 0.017 0.983 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 -25.254 -0.526 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.883 5.883 3 S 2.705 3.295 4 O -0.941 6.941 5 O -0.948 6.948 6 C -0.739 4.739 7 C -0.180 4.180 8 C 0.307 3.693 9 O -0.419 6.419 10 N -0.365 5.365 11 C 0.050 3.950 12 H 0.106 0.894 13 C -0.167 4.167 14 C -0.154 4.154 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.121 4.121 18 H 0.104 0.896 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.251 0.749 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.239 0.761 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.073 0.927 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.412 -25.138 -0.810 25.382 hybrid contribution -0.319 0.620 -0.051 0.699 sum 3.094 -24.519 -0.861 24.728 Atomic orbital electron populations 1.21542 0.78576 1.04362 1.02223 1.55372 1.16091 1.24575 1.92237 1.04951 0.73716 0.73946 0.76854 1.93627 1.78723 1.72188 1.49535 1.93616 1.32655 1.81241 1.87250 1.30375 1.11982 1.07585 1.23976 1.21379 1.02632 0.94942 0.99050 1.20093 0.80230 0.81352 0.87620 1.90685 1.36491 1.62598 1.52141 1.46119 1.49458 1.20139 1.20782 1.20989 0.99408 0.92329 0.82312 0.89384 1.21902 0.95218 1.01013 0.98531 1.21499 0.96169 0.96507 1.01198 1.21590 0.99425 0.95089 0.99752 1.21539 0.93440 1.02432 0.97442 1.21633 0.96399 0.92672 1.01419 0.89607 1.20647 0.95348 0.86191 0.94626 1.42369 1.52698 0.99420 1.43044 1.19261 1.17862 0.88957 1.10856 0.91232 1.24730 1.00205 0.96461 0.99591 1.69665 1.41757 1.07569 1.39237 0.86129 0.79532 0.80087 0.80524 1.20554 1.21894 1.21868 0.89935 0.91982 0.91176 0.74863 0.84144 0.84193 0.87005 0.87315 0.76087 0.90987 0.91809 0.92454 0.92279 0.91891 0.92213 0.90202 0.92655 0.96411 0.96491 0.78208 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.03 59.85 0.66 1.01 16 2 N -1.12 -6.24 6.08 -16.63 -0.10 -6.35 16 3 S 2.61 21.16 5.46 -107.50 -0.59 20.57 16 4 O -0.95 -11.14 17.73 -57.54 -1.02 -12.16 16 5 O -0.96 -10.51 18.08 -57.54 -1.04 -11.55 16 6 C -0.61 -4.51 5.31 37.16 0.20 -4.31 16 7 C -0.14 -1.20 5.71 -27.88 -0.16 -1.36 16 8 C 0.52 6.21 7.79 -10.98 -0.09 6.13 16 9 O -0.54 -8.05 15.65 5.56 0.09 -7.97 16 10 N -0.71 -8.27 3.62 -53.81 -0.19 -8.47 16 11 C 0.15 1.99 2.23 -67.93 -0.15 1.84 16 12 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 13 C -0.13 -1.45 5.60 -26.73 -0.15 -1.60 16 14 C -0.12 -1.20 5.77 -26.73 -0.15 -1.35 16 15 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 16 C -0.11 -1.53 4.90 -26.73 -0.13 -1.66 16 17 C -0.10 -1.51 2.02 -90.62 -0.18 -1.70 16 18 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 19 C 0.16 3.06 5.42 -4.04 -0.02 3.04 16 20 N -0.73 -17.87 5.33 -59.91 -0.32 -18.19 16 21 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 25 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.21 7.73 -51.93 -0.40 -0.20 16 31 H 0.07 0.36 8.04 -51.93 -0.42 -0.06 16 32 H 0.42 1.64 8.92 -34.47 -0.31 1.33 16 33 H 0.14 0.91 8.10 -51.92 -0.42 0.49 16 34 H 0.14 0.96 7.73 -51.92 -0.40 0.56 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 4.16 6.67 -40.82 -0.27 3.88 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.59 7.60 -51.93 -0.39 0.20 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 45 H 0.05 0.71 6.51 -51.93 -0.34 0.37 16 46 H 0.02 0.34 7.61 -51.93 -0.40 -0.05 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.38 9.80 6.85 -40.82 -0.28 9.53 16 49 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -37.34 401.15 -10.18 -47.52 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.17 Total: 9.08 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.58 Total: -8.73 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.11 Total: -60.14 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.97 Total: -31.68 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 21.16 SS G_CDS: -0.59 Total: 20.57 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.34 -10.18 -47.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699513132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.251 kcal (2) G-P(sol) polarization free energy of solvation -37.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds