Wall clock time and date at job start Wed Apr 1 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65599 * 119.99814 * 2 1 4 4 O 1.42097 * 104.27788 * 308.93172 * 3 2 1 5 5 O 1.42100 * 104.27875 * 181.07357 * 3 2 1 6 6 C 1.81399 * 104.44808 * 65.00555 * 3 2 1 7 7 C 1.52998 * 109.47108 * 180.02562 * 6 3 2 8 8 C 1.50706 * 109.47348 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99503 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72561 * 8 7 6 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46738 * 324.99609 * 11 10 8 13 13 C 1.52993 * 109.47171 * 84.99494 * 11 10 8 14 14 C 1.53002 * 109.47290 * 60.00189 * 13 11 10 15 15 C 1.52997 * 109.46906 * 59.99926 * 14 13 11 16 16 C 1.53006 * 109.47071 * 299.99931 * 15 14 13 17 17 C 1.52994 * 109.46945 * 204.99736 * 11 10 8 18 18 H 1.09002 * 109.47025 * 179.97438 * 17 11 10 19 19 C 1.53002 * 109.47420 * 60.00021 * 17 11 10 20 20 N 1.46500 * 109.47499 * 174.99836 * 19 17 11 21 21 C 1.36934 * 119.99913 * 179.97438 * 20 19 17 22 22 H 1.07991 * 120.00262 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99713 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00121 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00070 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46813 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46719 * 119.99914 * 25 23 21 28 28 H 1.48499 * 109.47348 * 240.00220 * 25 23 21 29 29 H 1.09000 * 109.46696 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46957 * 299.99172 * 1 2 3 31 31 H 1.08994 * 109.46931 * 59.99706 * 1 2 3 32 32 H 0.97002 * 120.00525 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47516 * 59.99948 * 6 3 2 34 34 H 1.09002 * 109.46834 * 299.99504 * 6 3 2 35 35 H 1.09001 * 109.47671 * 59.99908 * 7 6 3 36 36 H 1.08998 * 109.47454 * 299.99906 * 7 6 3 37 37 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.46922 * 180.02562 * 13 11 10 39 39 H 1.09007 * 109.47428 * 300.00223 * 13 11 10 40 40 H 1.08997 * 109.47064 * 179.97438 * 14 13 11 41 41 H 1.09002 * 109.47028 * 299.99801 * 14 13 11 42 42 H 1.09002 * 109.47380 * 60.00090 * 15 14 13 43 43 H 1.09003 * 109.46880 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.46845 * 180.02562 * 16 15 14 45 45 H 1.09002 * 109.47148 * 300.00301 * 16 15 14 46 46 H 1.09002 * 109.46646 * 294.99937 * 19 17 11 47 47 H 1.09003 * 109.47345 * 54.99165 * 19 17 11 48 48 H 0.96998 * 119.99501 * 0.02562 * 20 19 17 49 49 H 0.97002 * 119.99988 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7188 2.1703 -1.0712 5 8 3.6606 1.0493 -0.0258 6 6 1.8765 2.1972 1.5921 7 6 2.5889 3.5457 1.7133 8 6 2.2424 4.1800 3.0357 9 8 1.4984 3.6098 3.8052 10 7 2.7633 5.3786 3.3653 11 6 2.4269 5.9949 4.6511 12 1 1.3949 5.7569 4.9091 13 6 3.3613 5.4548 5.7355 14 6 4.8098 5.7889 5.3733 15 6 4.9724 7.3067 5.2695 16 6 4.0379 7.8467 4.1850 17 6 2.5895 7.5126 4.5472 18 1 2.3388 7.9712 5.5037 19 6 1.6550 8.0527 3.4627 20 7 1.7223 9.5160 3.4445 21 6 0.9666 10.2250 2.5493 22 1 0.3214 9.7055 1.8565 23 6 1.0308 11.6116 2.5316 24 7 1.8183 12.2447 3.3750 25 14 0.0005 12.5788 1.3100 26 1 -0.7935 11.6388 0.4786 27 1 -0.9176 13.4853 2.0453 28 1 0.8931 13.3811 0.4354 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.9501 -0.8400 -0.0004 33 1 2.1959 1.5430 2.4033 34 1 0.7988 2.3496 1.6511 35 1 2.2691 4.1999 0.9021 36 1 3.6667 3.3939 1.6540 37 1 3.3615 5.8328 2.7515 38 1 3.1106 5.9131 6.6922 39 1 3.2454 4.3735 5.8095 40 1 5.4754 5.4045 6.1461 41 1 5.0601 5.3303 4.4167 42 1 4.7221 7.7652 6.2262 43 1 6.0043 7.5447 5.0111 44 1 4.1542 8.9280 4.1107 45 1 4.2883 7.3882 3.2283 46 1 1.9613 7.6627 2.4921 47 1 0.6329 7.7385 3.6743 48 1 2.3027 9.9826 4.0660 49 1 1.8629 13.2136 3.3629 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699513132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:15 Heat of formation + Delta-G solvation = -147.058290 kcal Electronic energy + Delta-G solvation = -29312.163075 eV Core-core repulsion = 25206.550226 eV Total energy + Delta-G solvation = -4105.612849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43215 -39.42356 -38.21718 -37.08024 -36.46340 -35.86134 -34.70337 -34.17331 -33.70763 -31.23973 -30.81463 -27.10466 -26.80238 -26.10102 -24.68568 -23.32788 -22.15529 -21.71211 -20.32332 -20.02861 -19.34345 -19.00198 -18.26069 -17.44836 -17.13112 -16.97212 -16.66029 -16.54925 -16.16564 -15.75754 -15.50842 -15.21692 -15.14493 -14.95130 -14.72128 -14.58555 -14.32696 -14.00666 -13.76239 -13.57977 -13.39391 -13.24599 -13.13545 -13.10148 -12.97949 -12.85646 -12.73347 -12.58881 -12.55559 -12.44087 -12.08883 -11.94940 -11.91114 -11.84767 -11.41396 -11.18657 -11.04367 -10.92307 -10.85585 -10.44918 -9.99042 -8.98821 -7.95866 -5.23814 -0.78463 1.47017 1.47306 1.57343 1.61541 1.75248 2.20501 2.55163 2.78104 3.22674 3.35187 3.37934 3.58349 3.78830 3.83174 3.85270 3.87640 4.09424 4.22234 4.24654 4.36639 4.43590 4.48153 4.50113 4.51448 4.59310 4.65370 4.68343 4.75995 4.81236 4.92709 4.93606 5.02477 5.02948 5.09701 5.18436 5.27869 5.31904 5.36140 5.47928 5.48487 5.53714 5.62117 6.11643 6.26915 6.54497 7.22275 7.33879 8.09660 8.33488 9.27623 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.002667 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.886038 B =10495.210474 C =12429.590641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.117 6.117 3 S 2.637 3.363 4 O -0.990 6.990 5 O -0.987 6.987 6 C -0.602 4.602 7 C -0.147 4.147 8 C 0.521 3.479 9 O -0.573 6.573 10 N -0.711 5.711 11 C 0.162 3.838 12 H 0.069 0.931 13 C -0.122 4.122 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.089 4.089 18 H 0.076 0.924 19 C 0.160 3.840 20 N -0.741 5.741 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.970 3.030 26 H -0.268 1.268 27 H -0.294 1.294 28 H -0.292 1.292 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.426 0.574 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.410 0.590 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.026 0.974 47 H 0.005 0.995 48 H 0.376 0.624 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.041 -26.985 -0.768 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.878 5.878 3 S 2.729 3.271 4 O -0.980 6.980 5 O -0.977 6.977 6 C -0.732 4.732 7 C -0.188 4.188 8 C 0.307 3.693 9 O -0.453 6.453 10 N -0.363 5.363 11 C 0.056 3.944 12 H 0.087 0.913 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.144 4.144 17 C -0.108 4.108 18 H 0.094 0.906 19 C 0.033 3.967 20 N -0.384 5.384 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.193 1.193 27 H -0.221 1.221 28 H -0.219 1.219 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.262 0.738 33 H 0.171 0.829 34 H 0.164 0.836 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.248 0.752 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.023 0.977 48 H 0.208 0.792 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.804 -26.918 -1.084 27.207 hybrid contribution -0.497 1.091 0.054 1.200 sum 3.308 -25.826 -1.030 26.058 Atomic orbital electron populations 1.21774 0.77590 1.06034 1.02396 1.55102 1.16695 1.24037 1.92015 1.04077 0.72746 0.73836 0.76429 1.93579 1.79221 1.73464 1.51706 1.93570 1.34638 1.81782 1.87740 1.30306 1.12340 1.07158 1.23409 1.21547 1.04505 0.95454 0.97288 1.20586 0.79382 0.80983 0.88305 1.90672 1.37862 1.63364 1.53408 1.46094 1.49518 1.20264 1.20437 1.20784 0.99082 0.90744 0.83741 0.91268 1.21843 0.95509 1.00761 0.97911 1.21463 0.95532 0.95418 1.02266 1.21535 0.99270 0.95884 0.98521 1.21465 0.93179 1.00553 0.99178 1.21455 0.96150 0.93942 0.99235 0.90613 1.20775 0.95801 0.83522 0.96561 1.42543 1.52084 1.01459 1.42287 1.19617 1.17527 0.89516 1.10872 0.91073 1.25507 1.01836 0.97522 1.01673 1.69807 1.43493 1.07459 1.41029 0.85124 0.77951 0.78582 0.78409 1.19287 1.22119 1.21888 0.87594 0.90769 0.92166 0.73779 0.82902 0.83612 0.85904 0.84847 0.75207 0.90650 0.91878 0.90733 0.91447 0.92174 0.90996 0.93438 0.91470 0.95595 0.97748 0.79153 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 11.03 127.77 1.41 1.89 16 2 N -1.12 -10.69 6.08 -206.54 -1.25 -11.95 16 3 S 2.64 39.57 5.46 -56.49 -0.31 39.26 16 4 O -0.99 -22.63 17.73 -127.65 -2.26 -24.89 16 5 O -0.99 -20.55 18.08 -127.65 -2.31 -22.86 16 6 C -0.60 -7.79 5.31 71.98 0.38 -7.40 16 7 C -0.15 -2.24 5.71 29.85 0.17 -2.07 16 8 C 0.52 11.56 7.79 87.66 0.68 12.25 16 9 O -0.57 -16.36 15.65 -3.04 -0.05 -16.41 16 10 N -0.71 -15.43 3.62 -442.54 -1.60 -17.03 16 11 C 0.16 4.04 2.23 44.99 0.10 4.14 16 12 H 0.07 2.02 7.58 -2.39 -0.02 2.00 16 13 C -0.12 -2.54 5.60 30.59 0.17 -2.37 16 14 C -0.11 -1.96 5.77 30.59 0.18 -1.78 16 15 C -0.11 -2.40 5.92 30.60 0.18 -2.22 16 16 C -0.11 -2.85 4.90 30.60 0.15 -2.70 16 17 C -0.09 -2.61 2.02 -10.80 -0.02 -2.64 16 18 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 19 C 0.16 6.18 5.42 86.38 0.47 6.64 16 20 N -0.74 -36.82 5.33 -343.45 -1.83 -38.65 16 21 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 22 H 0.07 3.86 7.83 -2.92 -0.02 3.84 16 23 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 24 N -0.97 -58.64 13.06 21.65 0.28 -58.35 16 25 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 29 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.07 0.35 7.73 -2.39 -0.02 0.33 16 31 H 0.06 0.56 8.04 -2.39 -0.02 0.54 16 32 H 0.43 2.65 8.92 -96.75 -0.86 1.78 16 33 H 0.15 1.64 8.10 -2.39 -0.02 1.62 16 34 H 0.15 1.75 7.73 -2.39 -0.02 1.74 16 35 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.13 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.41 7.68 6.67 -92.71 -0.62 7.06 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.12 7.60 -2.39 -0.02 1.11 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.60 7.18 -2.39 -0.02 1.59 16 45 H 0.07 1.62 6.51 -2.39 -0.02 1.61 16 46 H 0.03 0.97 7.61 -2.39 -0.02 0.95 16 47 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.38 19.73 6.85 -92.71 -0.64 19.10 16 49 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -80.27 401.15 -3.27 -83.54 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -1.15 Total: 31.81 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 5.18 Total: -12.68 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -4.40 Total: -125.98 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: -4.62 Total: -64.16 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Atomic # 16 Polarization: 39.57 SS G_CDS: -0.31 Total: 39.26 kcal Total: -80.27 -3.27 -83.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699513132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.514 kcal (2) G-P(sol) polarization free energy of solvation -80.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds