Wall clock time and date at job start Wed Apr 1 2020 04:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 S 1.65603 * 120.00170 * 2 1 4 4 O 1.42099 * 104.27723 * 308.93095 * 3 2 1 5 5 O 1.42096 * 104.27794 * 181.07191 * 3 2 1 6 6 C 1.81396 * 104.44702 * 64.99921 * 3 2 1 7 7 C 1.53007 * 109.47005 * 179.97438 * 6 3 2 8 8 C 1.50700 * 109.46907 * 179.97438 * 7 6 3 9 9 O 1.21288 * 120.00138 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99921 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00171 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46916 * 35.00151 * 11 10 8 13 13 C 1.53004 * 109.47304 * 275.00519 * 11 10 8 14 14 C 1.52995 * 109.46907 * 300.00090 * 13 11 10 15 15 C 1.53003 * 109.47323 * 299.99901 * 14 13 11 16 16 C 1.53004 * 109.47012 * 59.99790 * 15 14 13 17 17 C 1.52995 * 109.47249 * 300.00256 * 16 15 14 18 18 H 1.08999 * 109.47414 * 300.00424 * 17 16 15 19 19 C 1.52996 * 109.47350 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.46681 * 64.99926 * 19 17 16 21 21 C 1.36943 * 119.99781 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 H 1.08997 * 109.47361 * 299.99408 * 1 2 3 30 30 H 1.08998 * 109.47220 * 60.00263 * 1 2 3 31 31 H 1.09003 * 109.46787 * 179.97438 * 1 2 3 32 32 H 0.97002 * 120.00176 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.47200 * 60.00552 * 6 3 2 34 34 H 1.09000 * 109.47443 * 300.00026 * 6 3 2 35 35 H 1.08998 * 109.46649 * 60.00613 * 7 6 3 36 36 H 1.08997 * 109.46976 * 299.99766 * 7 6 3 37 37 H 0.97000 * 119.99513 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.46997 * 59.99490 * 13 11 10 39 39 H 1.09000 * 109.47124 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47390 * 59.99965 * 14 13 11 41 41 H 1.09001 * 109.47241 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.47209 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.46940 * 300.00340 * 15 14 13 44 44 H 1.09002 * 109.46946 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.46819 * 60.00476 * 16 15 14 46 46 H 1.09006 * 109.47179 * 305.00542 * 19 17 16 47 47 H 1.08997 * 109.47540 * 185.00005 * 19 17 16 48 48 H 0.97000 * 120.00410 * 0.02562 * 20 19 17 49 49 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1703 -1.0712 5 8 3.6606 1.0492 -0.0258 6 6 1.8764 2.1973 1.5920 7 6 2.5900 3.5453 1.7137 8 6 2.2433 4.1795 3.0360 9 8 1.4992 3.6093 3.8056 10 7 2.7611 5.3799 3.3640 11 6 2.4246 5.9963 4.6496 12 1 2.3185 5.2204 5.4078 13 6 1.1077 6.7641 4.5181 14 6 1.2566 7.8532 3.4538 15 6 2.3709 8.8182 3.8639 16 6 3.6877 8.0503 3.9956 17 6 3.5388 6.9613 5.0598 18 1 3.2884 7.4198 6.0164 19 6 4.8554 6.1930 5.1911 20 7 5.8961 7.0908 5.6981 21 6 7.1673 6.6219 5.8974 22 1 7.4024 5.5902 5.6811 23 6 8.1519 7.4711 6.3833 24 7 7.8653 8.7282 6.6474 25 14 9.8840 6.8296 6.6625 26 1 10.4405 6.3323 5.3787 27 1 10.7405 7.9263 7.1810 28 1 9.8480 5.7203 7.6491 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8400 -0.0004 33 1 2.1958 1.5430 2.4033 34 1 0.7987 2.3496 1.6510 35 1 2.2709 4.1997 0.9025 36 1 3.6676 3.3925 1.6550 37 1 3.3565 5.8357 2.7486 38 1 0.3139 6.0767 4.2258 39 1 0.8572 7.2224 5.4748 40 1 1.5069 7.3946 2.4972 41 1 0.3183 8.3999 3.3597 42 1 2.4766 9.5943 3.1059 43 1 2.1205 9.2767 4.8205 44 1 4.4814 8.7377 4.2882 45 1 3.9380 7.5917 3.0389 46 1 5.1509 5.8090 4.2146 47 1 4.7236 5.3617 5.8836 48 1 5.6849 8.0173 5.8927 49 1 8.5535 9.3217 6.9866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699513134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:19 Heat of formation + Delta-G solvation = -117.589603 kcal Electronic energy + Delta-G solvation = -29300.889839 eV Core-core repulsion = 25196.554848 eV Total energy + Delta-G solvation = -4104.334991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.40788 -38.35511 -37.45491 -36.31600 -35.41902 -34.68221 -33.72181 -33.44563 -31.94127 -29.95223 -29.47009 -26.43195 -25.76787 -24.98286 -23.02059 -22.24074 -21.11682 -20.50073 -19.70817 -19.00222 -18.43214 -17.59442 -17.16041 -16.80461 -16.30502 -16.02295 -15.73008 -15.21320 -15.02506 -14.64421 -14.45768 -14.28968 -14.04166 -13.76269 -13.49926 -13.30177 -13.25129 -13.07820 -12.88531 -12.75342 -12.44738 -12.34523 -12.15872 -12.04198 -12.00097 -11.86328 -11.68704 -11.43975 -11.23922 -10.90651 -10.89963 -10.74076 -10.39146 -10.24199 -10.08661 -10.01540 -9.89490 -9.88426 -9.63813 -8.98457 -8.85789 -6.93286 -5.77887 -3.06345 -0.14060 2.31268 2.53511 3.07682 3.43858 3.44801 3.48360 3.49219 3.84680 4.01936 4.43206 4.50587 4.55320 4.61906 4.80885 4.85637 4.88366 4.94896 5.01820 5.11261 5.21915 5.24683 5.28731 5.30238 5.43310 5.55047 5.57571 5.60516 5.64889 5.71568 5.79262 6.01464 6.10190 6.12609 6.21084 6.24137 6.34594 6.45254 6.46740 6.53006 6.65423 6.77750 6.84295 7.47356 7.68804 8.15014 8.41245 9.52540 10.09872 10.44596 11.44862 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010755 B = 0.002610 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.778122 B =10727.229697 C =12597.903457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.124 6.124 3 S 2.614 3.386 4 O -0.954 6.954 5 O -0.954 6.954 6 C -0.610 4.610 7 C -0.138 4.138 8 C 0.523 3.477 9 O -0.542 6.542 10 N -0.713 5.713 11 C 0.154 3.846 12 H 0.088 0.912 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.111 4.111 17 C -0.102 4.102 18 H 0.086 0.914 19 C 0.160 3.840 20 N -0.731 5.731 21 C -0.240 4.240 22 H 0.068 0.932 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.418 0.582 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.403 0.597 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.018 0.982 47 H 0.017 0.983 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.371 -11.779 -12.978 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.883 5.883 3 S 2.705 3.295 4 O -0.944 6.944 5 O -0.944 6.944 6 C -0.739 4.739 7 C -0.180 4.180 8 C 0.307 3.693 9 O -0.419 6.419 10 N -0.365 5.365 11 C 0.049 3.951 12 H 0.106 0.894 13 C -0.167 4.167 14 C -0.154 4.154 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.121 4.121 18 H 0.104 0.896 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.371 4.371 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.252 0.748 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.239 0.761 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.073 0.927 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.333 -11.809 -13.104 26.171 hybrid contribution 1.054 -0.211 0.695 1.280 sum -18.279 -12.020 -12.408 25.151 Atomic orbital electron populations 1.21528 0.78690 1.04371 1.02053 1.55377 1.16030 1.24654 1.92223 1.04949 0.73748 0.73960 0.76809 1.93609 1.78861 1.72302 1.49655 1.93635 1.32500 1.81099 1.87163 1.30377 1.11693 1.07732 1.24119 1.21380 1.03050 0.94827 0.98745 1.20095 0.80340 0.81107 0.87758 1.90686 1.36563 1.62815 1.51854 1.46118 1.49496 1.19961 1.20917 1.20993 0.94030 0.95037 0.84994 0.89384 1.21901 0.97202 0.97647 0.99904 1.21498 0.98548 0.96680 0.98644 1.21588 0.95085 0.97701 1.01478 1.21538 0.97364 0.97745 0.98201 1.21633 0.95035 0.95666 0.99781 0.89608 1.20646 0.86942 0.92748 0.96473 1.42356 1.06289 1.10245 1.78621 1.19172 0.86423 0.95216 1.36284 0.91353 1.24724 0.98254 0.95816 1.02118 1.69638 1.33206 1.04248 1.51158 0.86272 0.84536 0.77466 0.77935 1.21259 1.21699 1.21305 0.92055 0.91287 0.89928 0.74766 0.83968 0.84361 0.87317 0.86994 0.76085 0.91816 0.90987 0.92283 0.92455 0.92212 0.91901 0.90202 0.92651 0.96412 0.96507 0.78204 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 11.03 59.84 0.66 0.98 16 2 N -1.12 -6.26 6.08 -16.64 -0.10 -6.36 16 3 S 2.61 21.21 5.46 -107.50 -0.59 20.62 16 4 O -0.95 -10.59 17.73 -57.54 -1.02 -11.61 16 5 O -0.95 -11.09 18.08 -57.54 -1.04 -12.13 16 6 C -0.61 -4.52 5.31 37.16 0.20 -4.32 16 7 C -0.14 -1.20 5.71 -27.88 -0.16 -1.36 16 8 C 0.52 6.22 7.79 -10.98 -0.09 6.13 16 9 O -0.54 -8.06 15.65 5.55 0.09 -7.98 16 10 N -0.71 -8.28 3.61 -53.80 -0.19 -8.47 16 11 C 0.15 1.99 2.23 -67.93 -0.15 1.84 16 12 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 13 C -0.13 -1.45 5.60 -26.73 -0.15 -1.60 16 14 C -0.12 -1.19 5.77 -26.73 -0.15 -1.35 16 15 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 16 C -0.11 -1.53 4.90 -26.73 -0.13 -1.66 16 17 C -0.10 -1.51 2.02 -90.62 -0.18 -1.70 16 18 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 19 C 0.16 3.07 5.42 -4.04 -0.02 3.05 16 20 N -0.73 -17.91 5.33 -59.91 -0.32 -18.23 16 21 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 25 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H 0.06 0.17 7.73 -51.93 -0.40 -0.23 16 30 H 0.07 0.31 8.04 -51.93 -0.42 -0.11 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.42 1.75 8.92 -34.47 -0.31 1.44 16 33 H 0.14 1.02 8.10 -51.92 -0.42 0.60 16 34 H 0.14 0.87 7.73 -51.92 -0.40 0.47 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 4.16 6.67 -40.82 -0.27 3.89 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.59 7.60 -51.93 -0.39 0.19 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 45 H 0.05 0.71 6.51 -51.93 -0.34 0.37 16 46 H 0.02 0.34 7.61 -51.93 -0.39 -0.05 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 401.13 15.07 6.05 6.05 Total: -1.00 -37.36 401.13 -10.18 -47.54 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -8.17 Total: 9.14 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.58 Total: -8.78 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.11 Total: -60.22 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.97 Total: -31.72 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 21.21 SS G_CDS: -0.59 Total: 20.62 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.36 -10.18 -47.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699513134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.049 kcal (2) G-P(sol) polarization free energy of solvation -37.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds