Wall clock time and date at job start Wed Apr 1 2020 04:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 S 1.65603 * 120.00170 * 2 1 4 4 O 1.42099 * 104.27723 * 308.93095 * 3 2 1 5 5 O 1.42096 * 104.27794 * 181.07191 * 3 2 1 6 6 C 1.81396 * 104.44702 * 64.99921 * 3 2 1 7 7 C 1.53007 * 109.47005 * 179.97438 * 6 3 2 8 8 C 1.50700 * 109.46907 * 179.97438 * 7 6 3 9 9 O 1.21288 * 120.00138 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99921 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00171 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46916 * 35.00151 * 11 10 8 13 13 C 1.53004 * 109.47304 * 275.00519 * 11 10 8 14 14 C 1.52995 * 109.46907 * 300.00090 * 13 11 10 15 15 C 1.53003 * 109.47323 * 299.99901 * 14 13 11 16 16 C 1.53004 * 109.47012 * 59.99790 * 15 14 13 17 17 C 1.52995 * 109.47249 * 300.00256 * 16 15 14 18 18 H 1.08999 * 109.47414 * 300.00424 * 17 16 15 19 19 C 1.52996 * 109.47350 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.46681 * 64.99926 * 19 17 16 21 21 C 1.36943 * 119.99781 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 H 1.08997 * 109.47361 * 299.99408 * 1 2 3 30 30 H 1.08998 * 109.47220 * 60.00263 * 1 2 3 31 31 H 1.09003 * 109.46787 * 179.97438 * 1 2 3 32 32 H 0.97002 * 120.00176 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.47200 * 60.00552 * 6 3 2 34 34 H 1.09000 * 109.47443 * 300.00026 * 6 3 2 35 35 H 1.08998 * 109.46649 * 60.00613 * 7 6 3 36 36 H 1.08997 * 109.46976 * 299.99766 * 7 6 3 37 37 H 0.97000 * 119.99513 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.46997 * 59.99490 * 13 11 10 39 39 H 1.09000 * 109.47124 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47390 * 59.99965 * 14 13 11 41 41 H 1.09001 * 109.47241 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.47209 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.46940 * 300.00340 * 15 14 13 44 44 H 1.09002 * 109.46946 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.46819 * 60.00476 * 16 15 14 46 46 H 1.09006 * 109.47179 * 305.00542 * 19 17 16 47 47 H 1.08997 * 109.47540 * 185.00005 * 19 17 16 48 48 H 0.97000 * 120.00410 * 0.02562 * 20 19 17 49 49 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1703 -1.0712 5 8 3.6606 1.0492 -0.0258 6 6 1.8764 2.1973 1.5920 7 6 2.5900 3.5453 1.7137 8 6 2.2433 4.1795 3.0360 9 8 1.4992 3.6093 3.8056 10 7 2.7611 5.3799 3.3640 11 6 2.4246 5.9963 4.6496 12 1 2.3185 5.2204 5.4078 13 6 1.1077 6.7641 4.5181 14 6 1.2566 7.8532 3.4538 15 6 2.3709 8.8182 3.8639 16 6 3.6877 8.0503 3.9956 17 6 3.5388 6.9613 5.0598 18 1 3.2884 7.4198 6.0164 19 6 4.8554 6.1930 5.1911 20 7 5.8961 7.0908 5.6981 21 6 7.1673 6.6219 5.8974 22 1 7.4024 5.5902 5.6811 23 6 8.1519 7.4711 6.3833 24 7 7.8653 8.7282 6.6474 25 14 9.8840 6.8296 6.6625 26 1 10.4405 6.3323 5.3787 27 1 10.7405 7.9263 7.1810 28 1 9.8480 5.7203 7.6491 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8400 -0.0004 33 1 2.1958 1.5430 2.4033 34 1 0.7987 2.3496 1.6510 35 1 2.2709 4.1997 0.9025 36 1 3.6676 3.3925 1.6550 37 1 3.3565 5.8357 2.7486 38 1 0.3139 6.0767 4.2258 39 1 0.8572 7.2224 5.4748 40 1 1.5069 7.3946 2.4972 41 1 0.3183 8.3999 3.3597 42 1 2.4766 9.5943 3.1059 43 1 2.1205 9.2767 4.8205 44 1 4.4814 8.7377 4.2882 45 1 3.9380 7.5917 3.0389 46 1 5.1509 5.8090 4.2146 47 1 4.7236 5.3617 5.8836 48 1 5.6849 8.0173 5.8927 49 1 8.5535 9.3217 6.9866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699513134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:18 Heat of formation + Delta-G solvation = -146.901597 kcal Electronic energy + Delta-G solvation = -29302.160902 eV Core-core repulsion = 25196.554848 eV Total energy + Delta-G solvation = -4105.606054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43201 -39.42321 -38.21971 -37.08123 -36.46038 -35.85544 -34.70307 -34.17366 -33.70854 -31.23887 -30.81317 -27.10259 -26.78916 -26.10118 -24.68262 -23.32705 -22.15423 -21.71212 -20.32401 -20.02801 -19.34101 -18.99871 -18.25053 -17.47787 -17.14339 -16.86306 -16.71933 -16.59952 -16.10564 -15.82533 -15.45470 -15.20465 -15.17708 -14.91142 -14.74960 -14.60434 -14.29453 -14.01441 -13.75845 -13.58265 -13.38184 -13.24926 -13.13569 -13.10223 -12.95715 -12.85108 -12.69915 -12.60548 -12.55707 -12.43992 -12.15440 -11.95342 -11.91901 -11.84378 -11.41159 -11.18580 -11.03200 -10.92260 -10.84778 -10.44212 -9.99008 -8.98899 -7.95504 -5.23608 -0.78429 1.46803 1.49070 1.55259 1.61335 1.75353 2.20568 2.55313 2.78192 3.22339 3.35032 3.37819 3.58376 3.78852 3.83110 3.85407 3.87636 4.09577 4.22534 4.24749 4.36420 4.43647 4.48269 4.50305 4.51356 4.59457 4.66516 4.68542 4.76053 4.81441 4.92783 4.94897 5.02392 5.03481 5.09885 5.18593 5.28090 5.31946 5.36270 5.47466 5.48385 5.53745 5.62215 6.10396 6.26885 6.54381 7.22191 7.33901 8.09766 8.33703 9.27511 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010755 B = 0.002610 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.778122 B =10727.229697 C =12597.903457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.118 6.118 3 S 2.637 3.363 4 O -0.985 6.985 5 O -0.992 6.992 6 C -0.602 4.602 7 C -0.147 4.147 8 C 0.521 3.479 9 O -0.573 6.573 10 N -0.711 5.711 11 C 0.162 3.838 12 H 0.069 0.931 13 C -0.122 4.122 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.089 4.089 18 H 0.075 0.925 19 C 0.160 3.840 20 N -0.740 5.740 21 C -0.246 4.246 22 H 0.071 0.929 23 C -0.072 4.072 24 N -0.967 5.967 25 Si 0.970 3.030 26 H -0.278 1.278 27 H -0.294 1.294 28 H -0.281 1.281 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.426 0.574 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.410 0.590 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.026 0.974 47 H 0.004 0.996 48 H 0.376 0.624 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.567 -12.565 -14.070 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.880 5.880 3 S 2.729 3.271 4 O -0.975 6.975 5 O -0.982 6.982 6 C -0.732 4.732 7 C -0.188 4.188 8 C 0.307 3.693 9 O -0.453 6.453 10 N -0.363 5.363 11 C 0.056 3.944 12 H 0.087 0.913 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.144 4.144 17 C -0.108 4.108 18 H 0.094 0.906 19 C 0.033 3.967 20 N -0.384 5.384 21 C -0.378 4.378 22 H 0.089 0.911 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.799 3.201 26 H -0.204 1.204 27 H -0.220 1.220 28 H -0.207 1.207 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.261 0.739 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.248 0.752 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.022 0.978 48 H 0.209 0.791 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.538 -12.631 -14.237 28.000 hybrid contribution 1.356 -0.033 1.060 1.722 sum -19.182 -12.664 -13.176 26.494 Atomic orbital electron populations 1.21789 0.77424 1.06038 1.02525 1.55128 1.16835 1.24010 1.92016 1.04076 0.72645 0.73909 0.76453 1.93567 1.79144 1.73381 1.51407 1.93580 1.35053 1.81821 1.87770 1.30310 1.12569 1.07121 1.23237 1.21547 1.04035 0.95665 0.97546 1.20588 0.79543 0.80671 0.88455 1.90673 1.38037 1.63495 1.53110 1.46093 1.49616 1.20177 1.20422 1.20789 0.94110 0.94165 0.85311 0.91315 1.21842 0.95749 0.97751 1.00661 1.21462 0.98786 0.96029 0.98393 1.21534 0.93879 0.97914 1.01880 1.21464 0.97963 0.96909 0.98030 1.21455 0.93329 0.95968 1.00028 0.90617 1.20773 0.87881 0.92135 0.95866 1.42528 1.06550 1.10538 1.78741 1.19548 0.87792 0.95294 1.35196 0.91139 1.25506 1.02023 0.96151 1.02776 1.69788 1.34070 1.05323 1.52527 0.85261 0.80029 0.76757 0.78007 1.20368 1.22033 1.20721 0.90648 0.91849 0.87759 0.73881 0.83607 0.82915 0.84785 0.85961 0.75207 0.91834 0.90657 0.91437 0.90700 0.90981 0.92186 0.93443 0.91470 0.95611 0.97822 0.79143 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 11.03 127.77 1.41 1.82 16 2 N -1.12 -10.77 6.08 -206.55 -1.25 -12.02 16 3 S 2.64 39.74 5.46 -56.49 -0.31 39.43 16 4 O -0.99 -20.81 17.73 -127.65 -2.26 -23.08 16 5 O -0.99 -22.50 18.08 -127.65 -2.31 -24.81 16 6 C -0.60 -7.82 5.31 71.98 0.38 -7.44 16 7 C -0.15 -2.25 5.71 29.85 0.17 -2.08 16 8 C 0.52 11.59 7.79 87.66 0.68 12.27 16 9 O -0.57 -16.40 15.65 -3.05 -0.05 -16.45 16 10 N -0.71 -15.47 3.61 -442.52 -1.60 -17.07 16 11 C 0.16 4.05 2.23 44.99 0.10 4.15 16 12 H 0.07 2.02 7.58 -2.39 -0.02 2.00 16 13 C -0.12 -2.53 5.60 30.59 0.17 -2.36 16 14 C -0.11 -1.95 5.77 30.59 0.18 -1.77 16 15 C -0.11 -2.40 5.92 30.60 0.18 -2.22 16 16 C -0.11 -2.85 4.90 30.59 0.15 -2.70 16 17 C -0.09 -2.62 2.02 -10.80 -0.02 -2.64 16 18 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 19 C 0.16 6.21 5.42 86.38 0.47 6.68 16 20 N -0.74 -36.93 5.33 -343.44 -1.83 -38.76 16 21 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 22 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 24 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 25 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 27 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 29 H 0.07 0.25 7.73 -2.39 -0.02 0.23 16 30 H 0.06 0.47 8.04 -2.39 -0.02 0.45 16 31 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.43 2.97 8.92 -96.74 -0.86 2.11 16 33 H 0.15 1.85 8.10 -2.39 -0.02 1.83 16 34 H 0.15 1.56 7.73 -2.39 -0.02 1.54 16 35 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.41 7.71 6.67 -92.71 -0.62 7.09 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.12 7.60 -2.39 -0.02 1.10 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.05 1.60 7.18 -2.39 -0.02 1.59 16 45 H 0.07 1.62 6.51 -2.39 -0.02 1.61 16 46 H 0.03 0.97 7.61 -2.38 -0.02 0.95 16 47 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 48 H 0.38 19.78 6.85 -92.71 -0.64 19.15 16 49 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -80.38 401.13 -3.27 -83.65 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -1.15 Total: 32.08 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 5.18 Total: -12.87 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -4.40 Total: -126.20 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -4.62 Total: -64.33 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: 39.74 SS G_CDS: -0.31 Total: 39.43 kcal Total: -80.38 -3.27 -83.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699513134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.252 kcal (2) G-P(sol) polarization free energy of solvation -80.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds