Wall clock time and date at job start Wed Apr 1 2020 04:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 120.00179 * 2 1 4 4 H 1.48496 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46857 * 300.00252 * 3 2 1 6 6 H 1.48500 * 109.46871 * 60.00084 * 3 2 1 7 7 C 1.38948 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99957 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00104 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99873 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00099 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47220 * 180.02562 * 12 10 9 14 14 C 1.46907 * 111.00013 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46820 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.49812 * 304.93650 * 15 14 13 17 17 C 1.53043 * 109.52104 * 184.85761 * 15 14 13 18 18 C 1.53070 * 109.65629 * 178.73636 * 17 15 14 19 19 C 1.53187 * 109.30169 * 61.15386 * 18 17 15 20 20 N 1.46934 * 108.89011 * 305.58072 * 19 18 17 21 21 C 1.34784 * 120.62734 * 233.55868 * 20 19 18 22 22 O 1.21549 * 119.99480 * 174.35786 * 21 20 19 23 23 C 1.47823 * 119.99863 * 354.35781 * 21 20 19 24 24 C 1.39946 * 120.94417 * 324.66721 * 23 21 20 25 25 N 1.32151 * 118.92696 * 179.71648 * 24 23 21 26 26 C 1.31872 * 120.96402 * 0.57514 * 25 24 23 27 27 N 1.31864 * 122.09437 * 359.70096 * 26 25 24 28 28 C 1.32148 * 120.97246 * 359.97438 * 27 26 25 29 29 C 1.46928 * 118.74008 * 53.52949 * 20 19 18 30 30 H 0.96996 * 119.99820 * 359.97438 * 1 2 3 31 31 H 0.97006 * 120.00114 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47447 * 59.99666 * 12 10 9 33 33 H 1.09008 * 109.47093 * 300.00483 * 12 10 9 34 34 H 1.00906 * 111.00231 * 56.04826 * 13 12 10 35 35 H 1.09003 * 109.46614 * 60.00310 * 14 13 12 36 36 H 1.09000 * 109.47273 * 299.99951 * 14 13 12 37 37 H 1.09009 * 109.45874 * 298.68791 * 17 15 14 38 38 H 1.09001 * 109.46096 * 58.65934 * 17 15 14 39 39 H 1.09003 * 109.39170 * 301.27182 * 18 17 15 40 40 H 1.09009 * 109.62349 * 181.17197 * 18 17 15 41 41 H 1.08999 * 109.58990 * 185.72145 * 19 18 17 42 42 H 1.08998 * 109.59165 * 65.43221 * 19 18 17 43 43 H 1.07999 * 120.53660 * 359.97438 * 24 23 21 44 44 H 1.08000 * 118.95211 * 179.67704 * 26 25 24 45 45 H 1.07996 * 120.54252 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.58078 * 66.18726 * 29 20 19 47 47 H 1.08998 * 109.58663 * 186.46449 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 7 2.1984 -5.9795 -0.0027 14 6 1.4980 -7.2709 -0.0026 15 6 2.5230 -8.4068 -0.0038 16 1 3.2029 -8.2825 -0.8466 17 6 1.7984 -9.7493 -0.1259 18 6 2.8228 -10.8862 -0.1591 19 6 3.6250 -10.8832 1.1460 20 7 4.2068 -9.5485 1.3437 21 6 5.5295 -9.4007 1.5563 22 8 6.0147 -8.2879 1.6162 23 6 6.3900 -10.5920 1.7168 24 6 5.9168 -11.7396 2.3630 25 7 6.7182 -12.7839 2.4793 26 6 7.9492 -12.7504 2.0076 27 7 8.4369 -11.6881 1.3973 28 6 7.7027 -10.6020 1.2317 29 6 3.3195 -8.3781 1.3044 30 1 -0.4850 0.8400 0.0004 31 1 0.3533 -2.3907 -0.0005 32 1 0.6167 -4.9201 -0.8919 33 1 0.6174 -4.9213 0.8880 34 1 2.8333 -5.9129 0.7788 35 1 0.8729 -7.3451 -0.8925 36 1 0.8734 -7.3455 0.8876 37 1 1.1369 -9.8841 0.7300 38 1 1.2113 -9.7629 -1.0442 39 1 3.4985 -10.7400 -1.0018 40 1 2.3072 -11.8406 -0.2670 41 1 4.4221 -11.6242 1.0867 42 1 2.9658 -11.1216 1.9807 43 1 4.9116 -11.7728 2.7564 44 1 8.5780 -13.6206 2.1251 45 1 8.1093 -9.7357 0.7312 46 1 2.6334 -8.4113 2.1508 47 1 3.9149 -7.4664 1.3522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713228618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:58 Heat of formation + Delta-G solvation = -11.448637 kcal Electronic energy + Delta-G solvation = -29673.121299 eV Core-core repulsion = 25470.237725 eV Total energy + Delta-G solvation = -4202.883574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84094 -40.24655 -38.42270 -37.89636 -35.78345 -34.40815 -33.91296 -33.39932 -32.55872 -31.48594 -31.10212 -27.47075 -26.74075 -25.47326 -24.90030 -24.67030 -23.65006 -21.99243 -21.01006 -19.85374 -19.20710 -18.46660 -18.14236 -17.86166 -17.43955 -16.64156 -16.11116 -15.69612 -15.58241 -15.03490 -14.90560 -14.74006 -14.50174 -14.41373 -14.26971 -14.13658 -13.88522 -13.73938 -13.40378 -13.30044 -13.11395 -12.94123 -12.22082 -12.12513 -11.80250 -11.64763 -11.51579 -11.44575 -11.35219 -11.11898 -11.02268 -10.91245 -10.73959 -10.38820 -10.31995 -10.19875 -10.02231 -9.84946 -9.49564 -9.02850 -8.44053 -8.05213 -7.93375 -6.39617 -3.80088 -0.02722 0.46326 2.28997 2.49174 3.18335 3.21632 3.28754 3.36717 3.50419 3.60496 3.85620 3.93366 3.95135 4.04614 4.23208 4.35579 4.37270 4.45855 4.61588 4.66039 4.78138 4.88266 4.92978 5.11427 5.13968 5.16703 5.26662 5.31563 5.37531 5.41570 5.45612 5.63014 5.69350 5.71289 5.72874 5.81283 5.92764 5.98825 6.08016 6.18914 6.27781 6.29360 6.92215 7.20991 7.43498 7.58012 7.64338 7.71447 8.09270 8.63964 9.20692 9.56894 10.08660 10.78277 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.001920 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.566428 B =14579.641670 C =15903.631143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.440 3.560 11 O -0.580 6.580 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.067 3.933 15 C -0.099 4.099 16 H 0.088 0.912 17 C -0.114 4.114 18 C -0.134 4.134 19 C 0.093 3.907 20 N -0.603 5.603 21 C 0.566 3.434 22 O -0.513 6.513 23 C -0.235 4.235 24 C 0.176 3.824 25 N -0.522 5.522 26 C 0.310 3.690 27 N -0.519 5.519 28 C 0.205 3.795 29 C 0.112 3.888 30 H 0.270 0.730 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.349 0.651 35 H 0.076 0.924 36 H 0.029 0.971 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.178 0.822 44 H 0.202 0.798 45 H 0.181 0.819 46 H 0.069 0.931 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 -29.402 3.291 29.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.225 3.775 11 O -0.464 6.464 12 C -0.082 4.082 13 N -0.304 5.304 14 C -0.064 4.064 15 C -0.119 4.119 16 H 0.106 0.894 17 C -0.152 4.152 18 C -0.172 4.172 19 C -0.030 4.030 20 N -0.336 5.336 21 C 0.352 3.648 22 O -0.389 6.389 23 C -0.243 4.243 24 C 0.010 3.990 25 N -0.236 5.236 26 C 0.024 3.976 27 N -0.232 5.232 28 C 0.039 3.961 29 C -0.009 4.009 30 H 0.080 0.920 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.195 0.805 44 H 0.219 0.781 45 H 0.198 0.802 46 H 0.088 0.912 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.282 -29.422 2.761 30.019 hybrid contribution -1.258 1.486 0.782 2.098 sum 4.024 -27.936 3.543 28.445 Atomic orbital electron populations 1.69622 1.05921 1.27992 1.50899 1.25261 0.95647 0.99716 0.97417 0.85799 0.79763 0.81133 0.77661 1.19192 1.20766 1.20797 1.19765 0.93426 0.82230 1.47277 0.87855 1.41870 1.09169 1.04607 1.64542 1.19830 0.88425 0.84747 0.84456 1.90543 1.13728 1.87028 1.55107 1.21670 0.94328 0.91017 1.01173 1.60105 1.18845 0.99925 1.51483 1.21953 0.94982 0.88684 1.00739 1.21530 0.97588 0.94224 0.98544 0.89387 1.21556 0.97517 0.93456 1.02717 1.21914 0.98455 0.99521 0.97304 1.22207 0.98070 0.84002 0.98696 1.47941 1.06540 1.08175 1.70923 1.17848 0.81657 0.88023 0.77307 1.90895 1.73134 1.25350 1.49481 1.21809 0.98399 0.97544 1.06518 1.23727 0.99175 0.86516 0.89613 1.68529 1.05951 1.29257 1.19833 1.25292 0.89608 0.95821 0.86909 1.68579 1.37726 1.00888 1.16029 1.23527 0.87834 0.95535 0.89212 1.21833 0.92686 0.89028 0.97386 0.91979 0.77494 0.89579 0.93895 0.83064 0.90581 0.95327 0.91569 0.91050 0.91228 0.90308 0.89645 0.90506 0.80541 0.78113 0.80240 0.91235 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 9 N -0.56 -14.52 5.29 -10.97 -0.06 -14.57 16 10 C 0.44 10.58 7.82 -10.99 -0.09 10.49 16 11 O -0.58 -16.21 15.78 5.55 0.09 -16.12 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 N -0.67 -10.76 6.12 -115.05 -0.70 -11.46 16 14 C 0.07 0.75 5.15 -3.82 -0.02 0.73 16 15 C -0.10 -0.96 2.55 -90.50 -0.23 -1.19 16 16 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 17 C -0.11 -0.76 5.16 -26.67 -0.14 -0.89 16 18 C -0.13 -0.74 6.09 -26.60 -0.16 -0.90 16 19 C 0.09 0.52 4.82 -3.71 -0.02 0.50 16 20 N -0.60 -5.45 2.97 -173.89 -0.52 -5.97 16 21 C 0.57 6.35 7.42 -12.34 -0.09 6.26 16 22 O -0.51 -8.03 16.31 5.32 0.09 -7.94 16 23 C -0.24 -2.10 5.31 -104.69 -0.56 -2.65 16 24 C 0.18 1.25 8.67 -16.78 -0.15 1.11 16 25 N -0.52 -3.98 10.42 -14.25 -0.15 -4.13 16 26 C 0.31 2.20 12.27 -92.03 -1.13 1.07 16 27 N -0.52 -4.58 10.42 -14.24 -0.15 -4.72 16 28 C 0.21 1.87 10.92 -16.77 -0.18 1.69 16 29 C 0.11 1.16 5.36 -3.71 -0.02 1.14 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.35 5.93 6.82 -39.29 -0.27 5.66 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 41 H 0.09 0.42 4.45 -51.93 -0.23 0.19 16 42 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 43 H 0.18 0.82 6.14 -52.49 -0.32 0.50 16 44 H 0.20 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.18 1.52 8.05 -52.49 -0.42 1.10 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.10 1.41 5.81 -51.93 -0.30 1.11 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -35.47 386.32 -9.38 -44.84 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.45 Total: 11.85 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -3.05 Total: 10.10 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -0.85 Total: -64.91 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.17 Total: -24.06 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.47 -9.38 -44.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713228618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.395 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds