Wall clock time and date at job start Wed Apr 1 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 120.00179 * 2 1 4 4 H 1.48496 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46857 * 300.00252 * 3 2 1 6 6 H 1.48500 * 109.46871 * 60.00084 * 3 2 1 7 7 C 1.38948 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99957 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00104 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99873 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00099 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47220 * 180.02562 * 12 10 9 14 14 C 1.46907 * 111.00013 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46820 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.49812 * 304.93650 * 15 14 13 17 17 C 1.53043 * 109.52104 * 184.85761 * 15 14 13 18 18 C 1.53070 * 109.65629 * 178.73636 * 17 15 14 19 19 C 1.53187 * 109.30169 * 61.15386 * 18 17 15 20 20 N 1.46934 * 108.89011 * 305.58072 * 19 18 17 21 21 C 1.34784 * 120.62734 * 233.55868 * 20 19 18 22 22 O 1.21549 * 119.99480 * 174.35786 * 21 20 19 23 23 C 1.47823 * 119.99863 * 354.35781 * 21 20 19 24 24 C 1.39946 * 120.94417 * 324.66721 * 23 21 20 25 25 N 1.32151 * 118.92696 * 179.71648 * 24 23 21 26 26 C 1.31872 * 120.96402 * 0.57514 * 25 24 23 27 27 N 1.31864 * 122.09437 * 359.70096 * 26 25 24 28 28 C 1.32148 * 120.97246 * 359.97438 * 27 26 25 29 29 C 1.46928 * 118.74008 * 53.52949 * 20 19 18 30 30 H 0.96996 * 119.99820 * 359.97438 * 1 2 3 31 31 H 0.97006 * 120.00114 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47447 * 59.99666 * 12 10 9 33 33 H 1.09008 * 109.47093 * 300.00483 * 12 10 9 34 34 H 1.00906 * 111.00231 * 56.04826 * 13 12 10 35 35 H 1.09003 * 109.46614 * 60.00310 * 14 13 12 36 36 H 1.09000 * 109.47273 * 299.99951 * 14 13 12 37 37 H 1.09009 * 109.45874 * 298.68791 * 17 15 14 38 38 H 1.09001 * 109.46096 * 58.65934 * 17 15 14 39 39 H 1.09003 * 109.39170 * 301.27182 * 18 17 15 40 40 H 1.09009 * 109.62349 * 181.17197 * 18 17 15 41 41 H 1.08999 * 109.58990 * 185.72145 * 19 18 17 42 42 H 1.08998 * 109.59165 * 65.43221 * 19 18 17 43 43 H 1.07999 * 120.53660 * 359.97438 * 24 23 21 44 44 H 1.08000 * 118.95211 * 179.67704 * 26 25 24 45 45 H 1.07996 * 120.54252 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.58078 * 66.18726 * 29 20 19 47 47 H 1.08998 * 109.58663 * 186.46449 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 7 2.1984 -5.9795 -0.0027 14 6 1.4980 -7.2709 -0.0026 15 6 2.5230 -8.4068 -0.0038 16 1 3.2029 -8.2825 -0.8466 17 6 1.7984 -9.7493 -0.1259 18 6 2.8228 -10.8862 -0.1591 19 6 3.6250 -10.8832 1.1460 20 7 4.2068 -9.5485 1.3437 21 6 5.5295 -9.4007 1.5563 22 8 6.0147 -8.2879 1.6162 23 6 6.3900 -10.5920 1.7168 24 6 5.9168 -11.7396 2.3630 25 7 6.7182 -12.7839 2.4793 26 6 7.9492 -12.7504 2.0076 27 7 8.4369 -11.6881 1.3973 28 6 7.7027 -10.6020 1.2317 29 6 3.3195 -8.3781 1.3044 30 1 -0.4850 0.8400 0.0004 31 1 0.3533 -2.3907 -0.0005 32 1 0.6167 -4.9201 -0.8919 33 1 0.6174 -4.9213 0.8880 34 1 2.8333 -5.9129 0.7788 35 1 0.8729 -7.3451 -0.8925 36 1 0.8734 -7.3455 0.8876 37 1 1.1369 -9.8841 0.7300 38 1 1.2113 -9.7629 -1.0442 39 1 3.4985 -10.7400 -1.0018 40 1 2.3072 -11.8406 -0.2670 41 1 4.4221 -11.6242 1.0867 42 1 2.9658 -11.1216 1.9807 43 1 4.9116 -11.7728 2.7564 44 1 8.5780 -13.6206 2.1251 45 1 8.1093 -9.7357 0.7312 46 1 2.6334 -8.4113 2.1508 47 1 3.9149 -7.4664 1.3522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713228618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:57 Heat of formation + Delta-G solvation = -38.454318 kcal Electronic energy + Delta-G solvation = -29674.292353 eV Core-core repulsion = 25470.237725 eV Total energy + Delta-G solvation = -4204.054628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.49550 -40.98812 -40.16570 -38.90817 -36.89538 -35.92068 -35.04007 -34.29701 -33.28893 -33.19163 -32.20379 -28.79458 -27.49469 -26.74014 -25.78276 -25.38304 -24.90324 -22.74126 -21.84103 -21.05971 -20.52492 -19.92307 -19.13270 -18.71175 -18.16818 -17.83590 -17.43022 -16.85621 -16.56455 -16.35520 -16.01858 -15.88004 -15.53959 -15.45973 -15.23900 -15.08263 -14.83028 -14.75496 -14.49112 -14.17616 -14.12341 -13.89529 -13.63196 -13.45825 -13.12862 -12.85796 -12.79869 -12.49848 -12.42648 -12.14175 -12.11635 -12.04207 -11.80337 -11.62390 -11.53341 -11.45623 -11.17446 -10.74396 -10.47203 -10.36239 -10.02938 -9.76492 -9.31188 -8.48575 -5.97158 -0.65681 -0.16338 1.34890 1.40103 1.48384 1.54593 1.76219 2.03672 2.28059 2.59182 2.92250 2.98282 3.02216 3.18489 3.22556 3.32847 3.50488 3.70244 3.76852 3.83450 3.96047 4.03280 4.17293 4.28527 4.31823 4.34321 4.47910 4.50621 4.55385 4.57118 4.65249 4.71071 4.78365 4.83102 4.91501 5.02453 5.14199 5.15490 5.28948 5.39548 5.40151 5.47982 5.66291 5.88895 6.11512 6.18057 6.36678 6.59012 6.83808 6.90029 7.11418 7.54627 8.11002 8.69004 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.001920 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.566428 B =14579.641670 C =15903.631143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.335 4.335 8 H 0.075 0.925 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.627 6.627 12 C 0.066 3.934 13 N -0.692 5.692 14 C 0.068 3.932 15 C -0.091 4.091 16 H 0.057 0.943 17 C -0.108 4.108 18 C -0.131 4.131 19 C 0.087 3.913 20 N -0.596 5.596 21 C 0.562 3.438 22 O -0.574 6.574 23 C -0.245 4.245 24 C 0.191 3.809 25 N -0.527 5.527 26 C 0.313 3.687 27 N -0.536 5.536 28 C 0.195 3.805 29 C 0.112 3.888 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.340 0.660 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.206 0.794 44 H 0.235 0.765 45 H 0.173 0.827 46 H 0.091 0.909 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -32.006 3.915 32.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.464 4.464 8 H 0.093 0.907 9 N -0.210 5.210 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.066 4.066 13 N -0.325 5.325 14 C -0.061 4.061 15 C -0.110 4.110 16 H 0.076 0.924 17 C -0.146 4.146 18 C -0.169 4.169 19 C -0.034 4.034 20 N -0.327 5.327 21 C 0.350 3.650 22 O -0.453 6.453 23 C -0.253 4.253 24 C 0.024 3.976 25 N -0.240 5.240 26 C 0.027 3.973 27 N -0.249 5.249 28 C 0.029 3.971 29 C -0.010 4.010 30 H 0.088 0.912 31 H 0.232 0.768 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.127 0.873 43 H 0.222 0.778 44 H 0.251 0.749 45 H 0.190 0.810 46 H 0.109 0.891 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.164 -32.085 3.369 32.416 hybrid contribution -0.622 2.209 0.577 2.367 sum 2.542 -29.876 3.946 30.242 Atomic orbital electron populations 1.69671 1.06705 1.29252 1.50309 1.26027 0.96596 1.02330 0.96261 0.84881 0.77907 0.77140 0.78455 1.20115 1.19432 1.19394 1.19683 0.92621 0.84165 1.49965 0.90664 1.41926 1.09334 1.04648 1.65069 1.21014 0.88274 0.86401 0.82156 1.90512 1.16151 1.88014 1.56632 1.21535 0.93907 0.87846 1.03303 1.60115 1.19334 1.01527 1.51506 1.22082 0.95309 0.86515 1.02175 1.21436 0.96908 0.95847 0.96847 0.92427 1.21540 0.97663 0.91391 1.03990 1.21923 0.97999 1.00480 0.96455 1.22549 0.98783 0.81945 1.00086 1.48048 1.05791 1.09423 1.69472 1.18224 0.82438 0.87865 0.76510 1.90863 1.74327 1.27647 1.52509 1.21605 0.98023 0.97509 1.08144 1.24113 1.00078 0.85338 0.88072 1.68658 1.06190 1.29130 1.20051 1.25998 0.89865 0.96067 0.85337 1.68632 1.37989 1.01237 1.17057 1.23527 0.88276 0.95783 0.89477 1.21743 0.92527 0.88086 0.98637 0.91241 0.76845 0.87520 0.91223 0.84121 0.89550 0.93069 0.89503 0.90367 0.92967 0.87330 0.88783 0.87300 0.77780 0.74868 0.80989 0.89134 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.06 13.05 21.66 0.28 -49.78 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 3 Si 0.99 44.00 29.55 68.60 2.03 46.03 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.33 -19.60 9.68 84.04 0.81 -18.78 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -30.13 5.29 -306.99 -1.62 -31.76 16 10 C 0.43 21.44 7.82 87.66 0.69 22.13 16 11 O -0.63 -36.76 15.78 -3.06 -0.05 -36.81 16 12 C 0.07 2.30 6.17 85.56 0.53 2.82 16 13 N -0.69 -22.36 6.12 -517.91 -3.17 -25.53 16 14 C 0.07 1.42 5.15 86.30 0.44 1.86 16 15 C -0.09 -1.67 2.55 -10.72 -0.03 -1.70 16 16 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 17 C -0.11 -1.09 5.16 30.63 0.16 -0.93 16 18 C -0.13 -1.04 6.09 30.68 0.19 -0.86 16 19 C 0.09 0.71 4.82 86.36 0.42 1.13 16 20 N -0.60 -10.48 2.97 -822.34 -2.45 -12.92 16 21 C 0.56 13.25 7.42 86.78 0.64 13.89 16 22 O -0.57 -19.74 16.31 -3.87 -0.06 -19.80 16 23 C -0.25 -4.39 5.31 -19.91 -0.11 -4.49 16 24 C 0.19 2.33 8.67 85.06 0.74 3.07 16 25 N -0.53 -6.80 10.42 -198.98 -2.07 -8.88 16 26 C 0.31 3.89 12.27 180.84 2.22 6.11 16 27 N -0.54 -9.26 10.42 -198.98 -2.07 -11.33 16 28 C 0.20 3.74 10.92 85.06 0.93 4.67 16 29 C 0.11 2.31 5.36 86.36 0.46 2.77 16 30 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.40 19.61 7.90 -92.70 -0.73 18.88 16 32 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.34 12.10 6.82 -89.69 -0.61 11.48 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 41 H 0.09 0.64 4.45 -2.39 -0.01 0.63 16 42 H 0.11 0.29 8.08 -2.39 -0.02 0.27 16 43 H 0.21 1.20 6.14 -2.91 -0.02 1.18 16 44 H 0.24 1.06 8.06 -2.91 -0.02 1.04 16 45 H 0.17 3.36 8.05 -2.91 -0.02 3.34 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.06 1.83 5.81 -2.39 -0.01 1.82 16 Total: -1.00 -81.95 386.32 -0.95 -82.90 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.32 Total: 36.39 kcal Atomic # 6 Polarization: 22.93 SS G_CDS: 8.56 Total: 31.49 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -11.11 Total: -140.19 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.11 Total: -56.61 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -81.95 -0.95 -82.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713228618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.445 kcal (2) G-P(sol) polarization free energy of solvation -81.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds