Wall clock time and date at job start Wed Apr 1 2020 04:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00084 * 2 1 4 4 H 1.48500 * 109.46958 * 270.00769 * 3 2 1 5 5 H 1.48500 * 109.47136 * 30.00396 * 3 2 1 6 6 H 1.48493 * 109.46886 * 150.00405 * 3 2 1 7 7 C 1.38812 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99494 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00320 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.64534 * 359.97358 * 9 7 2 11 11 C 1.54912 * 104.82952 * 155.90433 * 10 9 7 12 12 C 1.55160 * 101.57922 * 37.01053 * 11 10 9 13 13 H 1.09010 * 110.71852 * 83.03844 * 12 11 10 14 14 C 1.53001 * 110.71970 * 206.12881 * 12 11 10 15 15 C 1.53000 * 109.46886 * 182.55838 * 14 12 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.34779 * 119.99872 * 180.02562 * 16 15 14 18 18 O 1.21278 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99944 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.09554 * 39.10913 * 19 17 16 21 21 C 1.53338 * 109.10416 * 280.00095 * 19 17 16 22 22 C 1.50665 * 107.87844 * 282.28464 * 21 19 17 23 23 C 1.33066 * 130.80526 * 152.71051 * 22 21 19 24 24 N 1.34738 * 108.03337 * 179.69216 * 23 22 21 25 25 C 1.30815 * 109.54024 * 0.03811 * 24 23 22 26 26 N 1.35046 * 108.33976 * 0.23383 * 25 24 23 27 27 C 1.34577 * 131.29110 * 179.07562 * 26 25 24 28 28 O 1.21488 * 120.70324 * 9.61817 * 27 26 25 29 29 N 1.34835 * 118.59032 * 189.61070 * 27 26 25 30 30 C 1.47314 * 125.61325 * 180.19820 * 9 7 2 31 31 H 0.96998 * 119.99815 * 359.97438 * 1 2 3 32 32 H 1.09002 * 110.36653 * 37.07597 * 10 9 7 33 33 H 1.08989 * 110.46133 * 274.79276 * 10 9 7 34 34 H 1.09000 * 111.00905 * 278.93786 * 11 10 9 35 35 H 1.09003 * 111.03564 * 155.10043 * 11 10 9 36 36 H 1.09001 * 109.46652 * 62.56183 * 14 12 11 37 37 H 1.08992 * 109.47514 * 302.56273 * 14 12 11 38 38 H 1.09002 * 109.47398 * 300.00496 * 15 14 12 39 39 H 1.09001 * 109.47194 * 60.00677 * 15 14 12 40 40 H 0.97000 * 120.00420 * 0.02562 * 16 15 14 41 41 H 1.08999 * 109.77871 * 41.88133 * 21 19 17 42 42 H 1.09003 * 109.77588 * 162.63559 * 21 19 17 43 43 H 1.08000 * 125.98058 * 359.69172 * 23 22 21 44 44 H 1.08003 * 125.82899 * 180.20910 * 25 24 23 45 45 H 0.96996 * 118.55559 * 191.79464 * 29 27 26 46 46 H 1.09001 * 110.06538 * 61.68506 * 30 9 7 47 47 H 1.08992 * 109.85154 * 300.41803 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0006 11 6 -0.4021 -3.9322 -0.6113 12 6 0.7783 -4.7524 -0.0270 13 1 0.5452 -5.1007 0.9793 14 6 1.1223 -5.9313 -0.9395 15 6 2.2450 -6.7557 -0.3063 16 7 2.5748 -7.8842 -1.1803 17 6 3.5416 -8.7528 -0.8235 18 8 4.1389 -8.5999 0.2209 19 6 3.8813 -9.9134 -1.7229 20 1 3.8451 -9.5826 -2.7609 21 6 2.8491 -11.0281 -1.5151 22 6 3.1919 -11.7429 -0.2339 23 6 2.4221 -12.4096 0.6227 24 7 3.2068 -12.8732 1.6150 25 6 4.4453 -12.5117 1.3987 26 7 4.4853 -11.7961 0.2541 27 6 5.5075 -11.1950 -0.3822 28 8 6.6549 -11.3866 -0.0318 29 7 5.2312 -10.3757 -1.4168 30 6 1.9337 -3.7298 0.0031 31 1 -0.4850 0.8400 0.0004 32 1 -0.5998 -1.7588 -0.6148 33 1 -0.5283 -2.4862 1.0184 34 1 -0.3533 -3.8981 -1.6996 35 1 -1.3593 -4.3331 -0.2777 36 1 1.4495 -5.5566 -1.9094 37 1 0.2407 -6.5585 -1.0709 38 1 3.1267 -6.1285 -0.1749 39 1 1.9179 -7.1305 0.6636 40 1 2.0974 -8.0063 -2.0158 41 1 1.8506 -10.5972 -1.4414 42 1 2.8883 -11.7273 -2.3504 43 1 1.3552 -12.5537 0.5374 44 1 5.2912 -12.7453 2.0282 45 1 5.9618 -10.0808 -1.9826 46 1 2.5281 -3.8686 0.9062 47 1 2.5616 -3.8539 -0.8792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713732315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:44 Heat of formation + Delta-G solvation = 32.935378 kcal Electronic energy + Delta-G solvation = -30140.117622 eV Core-core repulsion = 25939.158684 eV Total energy + Delta-G solvation = -4200.958938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.49893 -40.50853 -39.50213 -37.93278 -36.68661 -35.39984 -33.54661 -33.16518 -32.40015 -30.99830 -29.49302 -28.84985 -26.73839 -25.35299 -24.71727 -24.29195 -22.45074 -21.92657 -21.42755 -20.14747 -19.82312 -19.28654 -18.79407 -17.80081 -17.48523 -16.93498 -16.61262 -16.39815 -15.93025 -15.43982 -15.30367 -14.97905 -14.70376 -14.48186 -14.39425 -14.03775 -13.80148 -13.66249 -13.33639 -13.13619 -12.81393 -12.59679 -12.34675 -11.98869 -11.77812 -11.62944 -11.34600 -11.14299 -10.94795 -10.87702 -10.78133 -10.63427 -10.60702 -10.20220 -10.10749 -10.00303 -9.80922 -9.70190 -9.48212 -9.35278 -9.05055 -8.65958 -6.83768 -5.66249 -3.07707 0.73476 1.70384 2.17237 2.35819 2.54060 2.77642 2.92115 3.38765 3.44053 3.46127 3.79818 3.84595 4.11796 4.19265 4.34189 4.41665 4.48190 4.75848 4.83182 4.91289 4.93577 4.99777 5.20053 5.35273 5.45470 5.52321 5.55312 5.69294 5.79852 5.82647 5.94236 6.03503 6.07152 6.14124 6.18352 6.22823 6.33721 6.56687 6.59220 6.62847 6.72887 6.93265 7.08970 7.30403 7.51153 7.53801 7.62057 7.80225 7.84597 8.35703 9.21766 9.82532 10.47692 11.37678 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.001924 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.059217 B =14547.317213 C =15125.733371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.115 4.115 15 C 0.117 3.883 16 N -0.721 5.721 17 C 0.490 3.510 18 O -0.520 6.520 19 C 0.120 3.880 20 H 0.132 0.868 21 C -0.051 4.051 22 C -0.039 4.039 23 C 0.014 3.986 24 N -0.482 5.482 25 C 0.258 3.742 26 N -0.454 5.454 27 C 0.736 3.264 28 O -0.527 6.527 29 N -0.705 5.705 30 C 0.139 3.861 31 H 0.252 0.748 32 H 0.106 0.894 33 H 0.010 0.990 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.181 0.819 44 H 0.220 0.780 45 H 0.426 0.574 46 H 0.019 0.981 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.225 -26.291 -8.620 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.118 4.118 13 H 0.090 0.910 14 C -0.153 4.153 15 C -0.006 4.006 16 N -0.373 5.373 17 C 0.273 3.727 18 O -0.395 6.395 19 C 0.011 3.989 20 H 0.149 0.851 21 C -0.090 4.090 22 C -0.146 4.146 23 C -0.129 4.129 24 N -0.199 5.199 25 C -0.025 4.025 26 N -0.159 5.159 27 C 0.437 3.563 28 O -0.398 6.398 29 N -0.361 5.361 30 C 0.013 3.987 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.235 0.765 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.198 0.802 44 H 0.236 0.764 45 H 0.265 0.735 46 H 0.037 0.963 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.972 -26.507 -6.889 27.548 hybrid contribution 0.785 1.536 -1.135 2.065 sum 3.757 -24.971 -8.024 26.496 Atomic orbital electron populations 1.69802 1.04880 1.24724 1.57798 1.24788 0.95743 0.97717 1.02547 0.86074 0.78561 0.83341 0.77556 1.21606 1.21632 1.20747 1.19091 0.90508 0.82560 1.42851 0.90575 1.44591 1.01976 0.99769 1.86823 1.21918 0.84663 0.92659 0.98158 1.23037 0.95816 0.98871 0.99935 1.22101 0.97598 0.93757 0.98324 0.90975 1.21788 0.97022 0.96730 0.99792 1.21566 0.99142 0.86444 0.93418 1.46033 1.38132 1.28086 1.25065 1.20916 0.80533 0.83791 0.87490 1.90789 1.50674 1.73844 1.24195 1.21087 0.83358 0.93567 1.00934 0.85075 1.20539 0.99407 0.95390 0.93627 1.21300 0.84391 1.08269 1.00668 1.21911 1.00162 0.99666 0.91113 1.70800 1.00453 1.23558 1.25126 1.25384 0.97628 0.92803 0.86682 1.43805 1.08650 1.41583 1.21865 1.15550 0.83424 0.78155 0.79156 1.91039 1.18557 1.65199 1.65035 1.44681 1.10051 1.49761 1.31614 1.21414 0.93640 0.85979 0.97625 0.93764 0.87661 0.97157 0.92195 0.92459 0.91098 0.91508 0.90829 0.91351 0.76492 0.86560 0.87445 0.80166 0.76364 0.73470 0.96294 0.95988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.09 55.49 0.56 -26.32 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.22 10.28 -15.06 -0.15 -6.37 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.61 -15.47 3.40 -169.85 -0.58 -16.05 16 10 C 0.15 3.61 5.89 -2.53 -0.01 3.59 16 11 C -0.14 -2.43 6.54 -24.58 -0.16 -2.59 16 12 C -0.10 -1.55 2.95 -88.78 -0.26 -1.81 16 13 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 14 C -0.12 -1.27 4.72 -26.73 -0.13 -1.39 16 15 C 0.12 1.29 5.54 -4.04 -0.02 1.27 16 16 N -0.72 -5.47 5.56 -60.29 -0.33 -5.80 16 17 C 0.49 4.55 6.71 -10.98 -0.07 4.48 16 18 O -0.52 -7.76 16.04 5.56 0.09 -7.67 16 19 C 0.12 0.60 3.54 -69.21 -0.25 0.35 16 20 H 0.13 0.08 8.14 -51.93 -0.42 -0.34 16 21 C -0.05 -0.19 5.98 -27.73 -0.17 -0.36 16 22 C -0.04 -0.32 6.39 -81.47 -0.52 -0.84 16 23 C 0.01 0.12 11.83 -18.07 -0.21 -0.09 16 24 N -0.48 -5.33 11.27 -14.82 -0.17 -5.50 16 25 C 0.26 2.69 12.53 -90.11 -1.13 1.56 16 26 N -0.45 -4.73 2.85 -64.88 -0.19 -4.92 16 27 C 0.74 8.15 7.91 -87.04 -0.69 7.47 16 28 O -0.53 -7.39 17.75 5.38 0.10 -7.30 16 29 N -0.70 -5.23 4.84 -60.06 -0.29 -5.52 16 30 C 0.14 2.83 6.13 -2.90 -0.02 2.81 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.11 2.83 5.87 -51.93 -0.31 2.53 16 33 H 0.01 0.27 8.14 -51.94 -0.42 -0.16 16 34 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.78 8.00 -51.93 -0.42 0.36 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.99 7.58 -51.93 -0.39 0.60 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.40 1.53 8.47 -40.82 -0.35 1.19 16 41 H 0.12 0.21 8.01 -51.93 -0.42 -0.20 16 42 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.18 1.04 8.06 -52.49 -0.42 0.61 16 44 H 0.22 1.73 8.06 -52.48 -0.42 1.30 16 45 H 0.43 2.33 8.90 -40.82 -0.36 1.96 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.02 0.44 7.73 -51.93 -0.40 0.04 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -38.92 385.10 -10.75 -49.67 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.83 Total: -1.12 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -3.89 Total: 7.61 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -1.00 Total: -64.11 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.18 Total: -14.97 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.92 -10.75 -49.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713732315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.610 kcal (2) G-P(sol) polarization free energy of solvation -38.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds