Wall clock time and date at job start Wed Apr 1 2020 04:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86792 * 119.99726 * 2 1 4 4 H 1.48501 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47440 * 299.99969 * 3 2 1 6 6 H 1.48504 * 109.47296 * 60.00281 * 3 2 1 7 7 C 1.38949 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99353 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00696 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00315 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99962 * 359.97438 * 10 9 7 12 12 C 1.50708 * 120.00191 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47031 * 179.97438 * 12 10 9 14 14 C 1.47959 * 110.99887 * 169.99758 * 13 12 10 15 15 C 1.53934 * 86.18202 * 222.42119 * 14 13 12 16 16 N 1.46507 * 113.73316 * 138.08044 * 15 14 13 17 17 C 1.34776 * 119.99920 * 155.00125 * 16 15 14 18 18 O 1.21290 * 119.99880 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00218 * 179.97438 * 17 16 15 20 20 H 1.08997 * 109.71074 * 60.60363 * 19 17 16 21 21 C 1.53384 * 109.70124 * 181.27631 * 19 17 16 22 22 C 1.53025 * 109.71542 * 170.23354 * 21 19 17 23 23 C 1.53377 * 109.75212 * 288.28144 * 22 21 19 24 24 C 1.50943 * 108.20300 * 50.66243 * 23 22 21 25 25 N 1.30128 * 128.28862 * 163.29167 * 24 23 22 26 26 N 1.40309 * 108.12779 * 180.10249 * 25 24 23 27 27 H 0.96998 * 126.01086 * 179.97438 * 26 25 24 28 28 C 1.35204 * 107.99173 * 359.96679 * 26 25 24 29 29 C 1.34576 * 107.61559 * 359.96619 * 28 26 25 30 30 C 1.47963 * 110.99734 * 70.64098 * 13 12 10 31 31 H 0.97001 * 120.00529 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99955 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.46790 * 59.99580 * 12 10 9 34 34 H 1.08993 * 109.46600 * 299.99827 * 12 10 9 35 35 H 1.09000 * 113.75891 * 108.10209 * 14 13 12 36 36 H 1.09007 * 113.75792 * 336.73816 * 14 13 12 37 37 H 1.09002 * 113.73699 * 269.25502 * 15 14 13 38 38 H 0.96998 * 119.99570 * 334.99563 * 16 15 14 39 39 H 1.09000 * 109.44364 * 50.15646 * 21 19 17 40 40 H 1.08999 * 109.43002 * 290.30190 * 21 19 17 41 41 H 1.09007 * 109.42573 * 168.19964 * 22 21 19 42 42 H 1.08992 * 109.42852 * 48.37026 * 22 21 19 43 43 H 1.09000 * 109.71125 * 170.33644 * 23 22 21 44 44 H 1.08998 * 109.71676 * 290.98285 * 23 22 21 45 45 H 1.07998 * 126.19315 * 179.97438 * 28 26 25 46 46 H 1.09004 * 113.75994 * 23.26458 * 30 13 12 47 47 H 1.08998 * 113.76163 * 251.89748 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0022 12 6 1.2437 -4.8630 0.0032 13 7 2.1984 -5.9795 0.0037 14 6 1.5090 -7.2664 0.2442 15 6 2.6856 -7.6044 1.1775 16 7 2.2796 -8.2531 2.4268 17 6 3.1488 -9.0410 3.0904 18 8 4.2669 -9.2133 2.6529 19 6 2.7316 -9.7079 4.3757 20 1 1.8844 -10.3679 4.1893 21 6 3.9047 -10.5169 4.9431 22 6 3.5675 -10.9924 6.3579 23 6 3.5923 -9.8019 7.3246 24 6 2.7415 -8.7012 6.7389 25 7 2.2498 -7.6564 7.3388 26 7 1.5231 -6.9134 6.3961 27 1 1.0485 -6.0847 6.5662 28 6 1.6006 -7.5555 5.2088 29 6 2.3470 -8.6603 5.3912 30 6 2.8909 -6.0843 1.3070 31 1 -0.4851 0.8400 0.0004 32 1 0.3534 -2.3907 0.0024 33 1 0.6174 -4.9213 -0.8870 34 1 0.6168 -4.9201 0.8930 35 1 1.4504 -7.9047 -0.6374 36 1 0.5545 -7.1635 0.7605 37 1 3.5072 -8.1189 0.6792 38 1 1.3854 -8.1155 2.7764 39 1 4.7962 -9.8904 4.9740 40 1 4.0916 -11.3807 4.3052 41 1 4.3014 -11.7330 6.6761 42 1 2.5747 -11.4423 6.3622 43 1 3.1883 -10.1044 8.2907 44 1 4.6163 -9.4493 7.4476 45 1 1.1460 -7.2389 4.2817 46 1 2.3406 -5.6357 2.1342 47 1 3.9365 -5.7781 1.2746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713823171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:31 Heat of formation + Delta-G solvation = 36.547827 kcal Electronic energy + Delta-G solvation = -30306.966273 eV Core-core repulsion = 26106.163982 eV Total energy + Delta-G solvation = -4200.802291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96445 -40.47348 -39.20289 -37.72673 -36.53583 -34.31021 -33.87999 -32.58263 -31.32435 -30.89564 -29.64482 -28.94286 -26.07472 -25.88044 -25.04930 -23.60764 -22.15170 -21.77921 -20.79807 -19.94326 -19.26462 -19.11899 -18.05749 -17.94084 -17.14466 -16.55804 -16.18518 -15.71598 -15.46115 -15.34225 -14.97911 -14.65850 -14.49341 -14.34957 -14.08922 -13.79468 -13.58804 -13.43539 -13.20149 -12.88773 -12.80592 -12.58428 -12.35510 -12.12671 -11.78098 -11.57438 -11.54932 -11.38997 -11.26286 -11.17290 -11.12049 -10.75782 -10.63758 -10.37625 -10.26645 -10.02356 -9.70403 -9.56301 -9.17192 -8.81453 -8.72644 -8.30114 -8.01302 -6.46651 -3.87379 1.56474 2.25012 2.48732 2.62165 2.98191 3.12828 3.23929 3.31428 3.83371 3.96251 4.07393 4.16158 4.33779 4.40907 4.48256 4.53139 4.65280 4.83633 4.92477 4.94089 5.06160 5.11195 5.14520 5.15429 5.24187 5.27176 5.38221 5.45452 5.58113 5.59280 5.62372 5.69418 5.73563 5.78129 5.81466 5.91842 6.08305 6.14399 6.22526 6.27841 6.34319 6.54433 6.95473 7.08220 7.28980 7.35521 7.51100 8.01029 8.06299 8.56158 9.13512 9.48679 10.00408 10.71161 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.002336 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.160173 B =11984.311705 C =13176.065745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.576 6.576 12 C 0.013 3.987 13 N -0.448 5.448 14 C -0.010 4.010 15 C 0.114 3.886 16 N -0.723 5.723 17 C 0.524 3.476 18 O -0.530 6.530 19 C -0.025 4.025 20 H 0.103 0.897 21 C -0.100 4.100 22 C -0.115 4.115 23 C -0.041 4.041 24 C 0.091 3.909 25 N -0.285 5.285 26 N -0.477 5.477 27 H 0.443 0.557 28 C 0.071 3.929 29 C -0.235 4.235 30 C 0.011 3.989 31 H 0.271 0.729 32 H 0.391 0.609 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.395 0.605 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.172 0.828 46 H 0.066 0.934 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.680 -22.453 12.164 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.227 3.773 11 O -0.460 6.460 12 C -0.119 4.119 13 N -0.171 5.171 14 C -0.139 4.139 15 C 0.009 3.991 16 N -0.376 5.376 17 C 0.310 3.690 18 O -0.406 6.406 19 C -0.048 4.048 20 H 0.121 0.879 21 C -0.138 4.138 22 C -0.153 4.153 23 C -0.080 4.080 24 C -0.078 4.078 25 N -0.107 5.107 26 N -0.185 5.185 27 H 0.287 0.713 28 C -0.077 4.077 29 C -0.247 4.247 30 C -0.119 4.119 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.143 0.857 38 H 0.230 0.770 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.189 0.811 46 H 0.084 0.916 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.896 -21.647 12.318 24.923 hybrid contribution -1.766 1.355 0.005 2.226 sum -2.663 -20.293 12.323 23.890 Atomic orbital electron populations 1.69616 1.05937 1.28080 1.50770 1.25259 0.95646 0.99735 0.97323 0.85806 0.79767 0.81100 0.77739 1.19184 1.20679 1.20761 1.19748 0.93396 0.82172 1.47411 0.87878 1.41870 1.09136 1.04607 1.64548 1.19674 0.88405 0.84495 0.84705 1.90543 1.13598 1.86940 1.54908 1.22451 0.94988 0.92583 1.01859 1.68384 1.18251 0.99835 1.30613 1.24449 0.96089 0.93950 0.99455 1.23146 0.98595 0.93243 0.84094 1.46240 1.16397 1.49766 1.25187 1.20606 0.85056 0.78156 0.85168 1.90720 1.20082 1.61542 1.68240 1.19747 1.00196 0.94854 0.89957 0.87924 1.21409 0.97133 0.99760 0.95485 1.21583 1.02547 0.96814 0.94311 1.20182 0.98239 0.91008 0.98619 1.22321 0.97928 0.95088 0.92422 1.77048 1.12775 1.06397 1.14522 1.46344 1.43123 1.22797 1.06231 0.71268 1.22090 1.00187 0.94079 0.91294 1.19623 1.09351 1.00301 0.95456 1.24289 1.02777 0.93686 0.91150 0.91917 0.77548 0.88957 0.92981 0.88499 0.91185 0.85676 0.76969 0.90443 0.90685 0.90477 0.91375 0.89828 0.89544 0.81143 0.91622 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 10 C 0.44 10.29 7.59 -10.98 -0.08 10.21 16 11 O -0.58 -15.63 15.13 5.55 0.08 -15.55 16 12 C 0.01 0.23 5.30 -4.97 -0.03 0.20 16 13 N -0.45 -7.12 5.95 -239.89 -1.43 -8.55 16 14 C -0.01 -0.10 7.73 -2.77 -0.02 -0.13 16 15 C 0.11 1.36 4.43 -69.62 -0.31 1.05 16 16 N -0.72 -6.77 4.77 -54.94 -0.26 -7.03 16 17 C 0.52 5.80 7.09 -10.99 -0.08 5.72 16 18 O -0.53 -8.02 15.45 5.55 0.09 -7.93 16 19 C -0.03 -0.21 2.90 -92.64 -0.27 -0.48 16 20 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 21 C -0.10 -0.80 4.61 -26.52 -0.12 -0.93 16 22 C -0.11 -0.68 5.86 -26.52 -0.16 -0.84 16 23 C -0.04 -0.30 6.31 -27.57 -0.17 -0.48 16 24 C 0.09 0.92 7.10 -82.35 -0.58 0.34 16 25 N -0.29 -3.25 12.68 33.75 0.43 -2.82 16 26 N -0.48 -4.40 7.37 30.35 0.22 -4.17 16 27 H 0.44 2.96 8.96 -182.44 -1.64 1.33 16 28 C 0.07 0.60 10.99 -17.36 -0.19 0.41 16 29 C -0.24 -2.19 5.41 -104.98 -0.57 -2.75 16 30 C 0.01 0.17 6.56 -2.76 -0.02 0.15 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.05 0.75 7.69 -51.93 -0.40 0.35 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.60 7.77 -51.93 -0.40 0.20 16 37 H 0.13 1.70 7.46 -51.93 -0.39 1.31 16 38 H 0.39 2.58 6.41 -40.82 -0.26 2.32 16 39 H 0.08 0.78 7.77 -51.93 -0.40 0.38 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.17 1.03 5.93 -52.49 -0.31 0.72 16 46 H 0.07 0.96 7.78 -51.93 -0.40 0.56 16 47 H 0.10 1.82 8.09 -51.93 -0.42 1.40 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -35.92 383.95 -10.12 -46.04 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -7.84 Total: 11.39 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -2.84 Total: 4.57 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.37 Total: -60.28 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.17 Total: -23.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.92 -10.12 -46.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713823171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.590 kcal (2) G-P(sol) polarization free energy of solvation -35.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds