Wall clock time and date at job start Wed Apr 1 2020 04:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86792 * 119.99726 * 2 1 4 4 H 1.48501 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47440 * 299.99969 * 3 2 1 6 6 H 1.48504 * 109.47296 * 60.00281 * 3 2 1 7 7 C 1.38949 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99353 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00696 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00315 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99962 * 359.97438 * 10 9 7 12 12 C 1.50708 * 120.00191 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47031 * 179.97438 * 12 10 9 14 14 C 1.47959 * 110.99887 * 169.99758 * 13 12 10 15 15 C 1.53934 * 86.18202 * 222.42119 * 14 13 12 16 16 N 1.46507 * 113.73316 * 138.08044 * 15 14 13 17 17 C 1.34776 * 119.99920 * 155.00125 * 16 15 14 18 18 O 1.21290 * 119.99880 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00218 * 179.97438 * 17 16 15 20 20 H 1.08997 * 109.71074 * 60.60363 * 19 17 16 21 21 C 1.53384 * 109.70124 * 181.27631 * 19 17 16 22 22 C 1.53025 * 109.71542 * 170.23354 * 21 19 17 23 23 C 1.53377 * 109.75212 * 288.28144 * 22 21 19 24 24 C 1.50943 * 108.20300 * 50.66243 * 23 22 21 25 25 N 1.30128 * 128.28862 * 163.29167 * 24 23 22 26 26 N 1.40309 * 108.12779 * 180.10249 * 25 24 23 27 27 H 0.96998 * 126.01086 * 179.97438 * 26 25 24 28 28 C 1.35204 * 107.99173 * 359.96679 * 26 25 24 29 29 C 1.34576 * 107.61559 * 359.96619 * 28 26 25 30 30 C 1.47963 * 110.99734 * 70.64098 * 13 12 10 31 31 H 0.97001 * 120.00529 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99955 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.46790 * 59.99580 * 12 10 9 34 34 H 1.08993 * 109.46600 * 299.99827 * 12 10 9 35 35 H 1.09000 * 113.75891 * 108.10209 * 14 13 12 36 36 H 1.09007 * 113.75792 * 336.73816 * 14 13 12 37 37 H 1.09002 * 113.73699 * 269.25502 * 15 14 13 38 38 H 0.96998 * 119.99570 * 334.99563 * 16 15 14 39 39 H 1.09000 * 109.44364 * 50.15646 * 21 19 17 40 40 H 1.08999 * 109.43002 * 290.30190 * 21 19 17 41 41 H 1.09007 * 109.42573 * 168.19964 * 22 21 19 42 42 H 1.08992 * 109.42852 * 48.37026 * 22 21 19 43 43 H 1.09000 * 109.71125 * 170.33644 * 23 22 21 44 44 H 1.08998 * 109.71676 * 290.98285 * 23 22 21 45 45 H 1.07998 * 126.19315 * 179.97438 * 28 26 25 46 46 H 1.09004 * 113.75994 * 23.26458 * 30 13 12 47 47 H 1.08998 * 113.76163 * 251.89748 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0022 12 6 1.2437 -4.8630 0.0032 13 7 2.1984 -5.9795 0.0037 14 6 1.5090 -7.2664 0.2442 15 6 2.6856 -7.6044 1.1775 16 7 2.2796 -8.2531 2.4268 17 6 3.1488 -9.0410 3.0904 18 8 4.2669 -9.2133 2.6529 19 6 2.7316 -9.7079 4.3757 20 1 1.8844 -10.3679 4.1893 21 6 3.9047 -10.5169 4.9431 22 6 3.5675 -10.9924 6.3579 23 6 3.5923 -9.8019 7.3246 24 6 2.7415 -8.7012 6.7389 25 7 2.2498 -7.6564 7.3388 26 7 1.5231 -6.9134 6.3961 27 1 1.0485 -6.0847 6.5662 28 6 1.6006 -7.5555 5.2088 29 6 2.3470 -8.6603 5.3912 30 6 2.8909 -6.0843 1.3070 31 1 -0.4851 0.8400 0.0004 32 1 0.3534 -2.3907 0.0024 33 1 0.6174 -4.9213 -0.8870 34 1 0.6168 -4.9201 0.8930 35 1 1.4504 -7.9047 -0.6374 36 1 0.5545 -7.1635 0.7605 37 1 3.5072 -8.1189 0.6792 38 1 1.3854 -8.1155 2.7764 39 1 4.7962 -9.8904 4.9740 40 1 4.0916 -11.3807 4.3052 41 1 4.3014 -11.7330 6.6761 42 1 2.5747 -11.4423 6.3622 43 1 3.1883 -10.1044 8.2907 44 1 4.6163 -9.4493 7.4476 45 1 1.1460 -7.2389 4.2817 46 1 2.3406 -5.6357 2.1342 47 1 3.9365 -5.7781 1.2746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713823171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:30 Heat of formation + Delta-G solvation = 6.774381 kcal Electronic energy + Delta-G solvation = -30308.257346 eV Core-core repulsion = 26106.163982 eV Total energy + Delta-G solvation = -4202.093364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.67054 -41.54826 -40.34305 -39.38115 -37.19952 -36.00142 -35.18114 -33.40343 -33.23576 -31.63398 -30.86540 -29.62939 -27.42418 -27.09295 -26.12038 -24.86794 -22.89805 -22.50784 -21.68009 -21.12662 -20.79983 -19.92096 -19.76178 -18.76364 -17.97119 -17.91101 -17.58086 -16.64483 -16.58928 -16.39785 -16.22682 -15.86364 -15.73721 -15.56507 -15.10460 -14.99716 -14.85781 -14.31401 -14.18797 -13.91669 -13.70849 -13.56009 -13.49768 -13.40298 -13.13998 -12.95121 -12.88001 -12.45459 -12.35415 -12.19796 -12.16281 -12.03402 -11.78378 -11.71372 -11.53519 -11.44060 -10.89610 -10.41866 -10.36486 -10.11994 -10.03735 -9.73926 -9.46901 -8.50153 -5.98253 0.87734 1.33038 1.38927 1.47442 1.52419 1.74427 1.91270 2.02694 2.14791 2.27345 2.86017 3.16779 3.21856 3.42576 3.55665 3.70282 3.75566 3.82376 3.91922 4.10014 4.12668 4.27125 4.33139 4.35889 4.42610 4.46932 4.52341 4.54226 4.58023 4.67896 4.72875 4.83360 4.85568 5.00445 5.04750 5.16228 5.20778 5.25453 5.34847 5.38408 5.42535 5.52566 5.62998 5.85962 6.04603 6.35704 6.50985 6.57838 6.65686 7.10661 7.24047 7.53642 8.10482 8.67348 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.002336 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.160173 B =11984.311705 C =13176.065745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.989 3.011 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.332 4.332 8 H 0.074 0.926 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.622 6.622 12 C 0.027 3.973 13 N -0.481 5.481 14 C 0.010 3.990 15 C 0.130 3.870 16 N -0.706 5.706 17 C 0.522 3.478 18 O -0.577 6.577 19 C -0.016 4.016 20 H 0.135 0.865 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.044 4.044 24 C 0.080 3.920 25 N -0.322 5.322 26 N -0.479 5.479 27 H 0.451 0.549 28 C 0.073 3.927 29 C -0.248 4.248 30 C 0.005 3.995 31 H 0.278 0.722 32 H 0.397 0.603 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.413 0.587 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.196 0.804 46 H 0.073 0.927 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 -23.793 12.463 27.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.813 3.187 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.461 4.461 8 H 0.092 0.908 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.508 6.508 12 C -0.105 4.105 13 N -0.205 5.205 14 C -0.118 4.118 15 C 0.023 3.977 16 N -0.360 5.360 17 C 0.310 3.690 18 O -0.455 6.455 19 C -0.038 4.038 20 H 0.152 0.848 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.083 4.083 24 C -0.088 4.088 25 N -0.145 5.145 26 N -0.187 5.187 27 H 0.297 0.703 28 C -0.075 4.075 29 C -0.260 4.260 30 C -0.125 4.125 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.252 0.748 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.213 0.787 46 H 0.091 0.909 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.407 -22.993 12.634 26.456 hybrid contribution -0.969 1.768 -0.097 2.018 sum -4.376 -21.225 12.538 25.037 Atomic orbital electron populations 1.69658 1.06633 1.29222 1.50392 1.25967 0.96549 1.02184 0.96350 0.84934 0.77942 0.77404 0.78458 1.20185 1.19490 1.19444 1.19628 0.92510 0.84145 1.49859 0.90811 1.41922 1.09312 1.04614 1.65239 1.20878 0.88268 0.86164 0.82221 1.90519 1.16068 1.87954 1.56294 1.22365 0.94589 0.89099 1.04443 1.68342 1.19551 1.01483 1.31083 1.24510 0.96551 0.90780 1.00003 1.22740 0.98951 0.90775 0.85204 1.46042 1.17033 1.48725 1.24179 1.21164 0.84391 0.77767 0.85726 1.90709 1.22122 1.63165 1.69520 1.19771 1.01250 0.94779 0.87972 0.84754 1.21412 0.95995 0.99406 0.97064 1.21549 1.03870 0.96427 0.92381 1.20318 0.97626 0.90873 0.99514 1.22802 0.97751 0.95218 0.93014 1.76995 1.14197 1.07400 1.15926 1.46411 1.42977 1.23091 1.06252 0.70323 1.22505 0.99599 0.93603 0.91780 1.19792 1.09821 1.01013 0.95400 1.24224 1.00377 0.96414 0.91523 0.91257 0.76855 0.86782 0.89549 0.86777 0.87477 0.87701 0.74822 0.93266 0.90158 0.88717 0.89974 0.88682 0.89952 0.78718 0.90882 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.68 13.05 21.66 0.28 -48.40 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 0.99 43.00 29.55 68.60 2.03 45.02 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 8 H 0.07 4.54 7.16 -2.91 -0.02 4.52 16 9 N -0.57 -28.88 5.29 -306.99 -1.62 -30.51 16 10 C 0.44 20.50 7.59 87.66 0.67 21.16 16 11 O -0.62 -35.01 15.13 -3.07 -0.05 -35.06 16 12 C 0.03 0.84 5.30 85.56 0.45 1.30 16 13 N -0.48 -14.58 5.95 -912.86 -5.43 -20.01 16 14 C 0.01 0.18 7.73 86.41 0.67 0.85 16 15 C 0.13 2.90 4.43 46.55 0.21 3.11 16 16 N -0.71 -11.60 4.77 -446.10 -2.13 -13.73 16 17 C 0.52 10.93 7.09 87.66 0.62 11.55 16 18 O -0.58 -17.64 15.45 -3.06 -0.05 -17.69 16 19 C -0.02 -0.23 2.90 -12.10 -0.04 -0.27 16 20 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 21 C -0.10 -1.51 4.61 30.73 0.14 -1.37 16 22 C -0.10 -1.04 5.86 30.73 0.18 -0.86 16 23 C -0.04 -0.60 6.31 30.05 0.19 -0.41 16 24 C 0.08 1.56 7.10 43.44 0.31 1.87 16 25 N -0.32 -7.20 12.68 -47.14 -0.60 -7.80 16 26 N -0.48 -8.32 7.37 -57.88 -0.43 -8.75 16 27 H 0.45 5.64 8.96 -213.19 -1.91 3.73 16 28 C 0.07 1.09 10.99 83.33 0.92 2.01 16 29 C -0.25 -4.21 5.41 -20.10 -0.11 -4.32 16 30 C 0.00 0.15 6.56 86.41 0.57 0.72 16 31 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 32 H 0.40 18.68 7.90 -92.70 -0.73 17.95 16 33 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.09 2.16 7.69 -2.39 -0.02 2.14 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 1.22 7.77 -2.38 -0.02 1.20 16 37 H 0.10 2.86 7.46 -2.39 -0.02 2.84 16 38 H 0.41 3.80 6.41 -92.71 -0.59 3.20 16 39 H 0.05 1.02 7.77 -2.39 -0.02 1.00 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 42 H 0.08 0.62 8.10 -2.39 -0.02 0.60 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.20 1.73 5.93 -2.91 -0.02 1.71 16 46 H 0.07 2.07 7.78 -2.39 -0.02 2.05 16 47 H 0.05 2.10 8.09 -2.39 -0.02 2.08 16 Total: -1.00 -82.23 383.95 -4.13 -86.36 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -2.19 Total: 33.33 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 6.05 Total: 17.24 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -9.92 Total: -129.20 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.09 Total: -52.75 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -82.23 -4.13 -86.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713823171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.132 kcal (2) G-P(sol) polarization free energy of solvation -82.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds